Wall clock time and date at job start Tue Mar 31 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52989 * 109.47099 * 277.53726 * 3 2 1 5 5 N 1.46907 * 109.47244 * 180.02562 * 4 3 2 6 6 C 1.46891 * 111.00289 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47549 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47105 * 305.00526 * 7 6 5 9 9 O 1.42898 * 109.47063 * 64.99578 * 7 6 5 10 10 C 1.52997 * 109.47931 * 184.99940 * 7 6 5 11 11 O 1.42891 * 109.47658 * 175.00097 * 10 7 6 12 12 C 1.35679 * 117.00343 * 180.02562 * 11 10 7 13 13 C 1.39315 * 119.81222 * 359.72017 * 12 11 10 14 14 C 1.36439 * 120.17874 * 179.76523 * 13 12 11 15 15 C 1.40837 * 119.81377 * 0.51160 * 14 13 12 16 16 C 1.41211 * 120.17994 * 179.71887 * 15 14 13 17 17 H 1.08003 * 119.99873 * 155.16566 * 16 15 14 18 18 C 1.39892 * 120.00133 * 335.17238 * 16 15 14 19 19 N 1.30883 * 119.99904 * 342.15290 * 18 16 15 20 20 Si 1.86793 * 120.00410 * 162.15773 * 18 16 15 21 21 H 1.48504 * 109.47386 * 94.64900 * 20 18 16 22 22 H 1.48501 * 109.47318 * 214.65505 * 20 18 16 23 23 H 1.48504 * 109.46872 * 334.65146 * 20 18 16 24 24 C 1.40837 * 119.63910 * 359.74424 * 15 14 13 25 25 C 1.36436 * 119.81253 * 359.97438 * 24 15 14 26 26 H 4.44651 * 5.63324 * 179.97438 * 4 1 2 27 27 H 1.09003 * 109.46493 * 157.53943 * 3 2 1 28 28 H 1.08997 * 109.47045 * 37.54095 * 3 2 1 29 29 H 1.09003 * 109.47270 * 60.00694 * 4 3 2 30 30 H 1.08997 * 109.47473 * 300.00107 * 4 3 2 31 31 H 1.00901 * 110.99200 * 303.95411 * 5 4 3 32 32 H 1.09006 * 109.47464 * 59.99850 * 6 5 4 33 33 H 1.09004 * 109.47482 * 300.00040 * 6 5 4 34 34 H 0.96708 * 113.99836 * 60.00389 * 9 7 6 35 35 H 1.09006 * 109.46722 * 54.99713 * 10 7 6 36 36 H 1.09003 * 109.46847 * 295.00273 * 10 7 6 37 37 H 1.07993 * 119.90914 * 0.02562 * 13 12 11 38 38 H 1.08002 * 120.09508 * 180.25458 * 14 13 12 39 39 H 0.96995 * 120.00354 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.08746 * 179.97438 * 24 15 14 41 41 H 1.08000 * 119.90545 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1883 1.4299 5 7 4.6252 -0.1870 1.4301 6 6 5.1517 -0.3673 2.7895 7 6 6.6811 -0.3612 2.7491 8 1 7.0289 -1.1167 2.0445 9 8 7.1415 0.9259 2.3329 10 6 7.2295 -0.6728 4.1430 11 8 8.6529 -0.7821 4.0814 12 6 9.3003 -1.0582 5.2414 13 6 8.5737 -1.2150 6.4197 14 6 9.2166 -1.4975 7.5895 15 6 10.6195 -1.6198 7.6056 16 6 11.2934 -1.9062 8.8131 17 1 12.2609 -2.3855 8.7910 18 6 10.7076 -1.5691 10.0379 19 7 9.7321 -0.6974 10.0789 20 14 11.3176 -2.3628 11.6150 21 1 12.3303 -1.4833 12.2523 22 1 10.1762 -2.5580 12.5446 23 1 11.9314 -3.6783 11.3017 24 6 11.3468 -1.4546 6.4110 25 6 10.6882 -1.1781 5.2486 26 1 -1.0500 0.0002 0.0001 27 1 3.0089 0.9506 -0.3926 28 1 3.0097 -0.8140 -0.6262 29 1 2.7933 -1.1382 1.8226 30 1 2.7924 0.6264 2.0561 31 1 4.9873 -0.8923 0.8059 32 1 4.8030 -1.3188 3.1910 33 1 4.8015 0.4457 3.4256 34 1 6.8686 1.6484 2.9149 35 1 6.8078 -1.6135 4.4974 36 1 6.9560 0.1292 4.8286 37 1 7.4983 -1.1168 6.4064 38 1 8.6516 -1.6228 8.5014 39 1 9.3261 -0.4634 10.9282 40 1 12.4230 -1.5465 6.4151 41 1 11.2444 -1.0507 4.3316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336778675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:01 Heat of formation + Delta-G solvation = -22.440903 kcal Electronic energy + Delta-G solvation = -21248.676161 eV Core-core repulsion = 17901.858568 eV Total energy + Delta-G solvation = -3346.817593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.11212 -37.95012 -36.60143 -35.86026 -33.93868 -33.34357 -31.05749 -29.69129 -29.46321 -28.55052 -25.42957 -24.42934 -22.74405 -22.02424 -20.91297 -20.34304 -18.46209 -17.37205 -17.13566 -16.78654 -16.27243 -15.72543 -15.42704 -15.16918 -14.69606 -14.39740 -14.10977 -13.95612 -13.66077 -13.15024 -13.03514 -12.66799 -12.42202 -12.27660 -12.00467 -11.92973 -11.75385 -11.44884 -11.12746 -11.01821 -10.84245 -10.64132 -10.56617 -10.44707 -9.94157 -9.92765 -9.78294 -9.37415 -9.01987 -8.75491 -7.66621 -7.01864 -6.74120 -4.26100 2.43303 2.50428 2.75732 2.95474 3.07067 3.11313 3.20587 3.47485 3.94082 4.01720 4.33999 4.49019 4.60797 4.70390 4.79890 4.94541 4.98325 5.12422 5.19644 5.29396 5.44640 5.56326 5.59546 5.63542 5.66804 5.68588 6.02325 6.09137 6.27784 6.57523 6.71339 6.88323 6.99832 7.05809 7.26939 7.27462 7.39978 7.55045 7.76217 7.89404 7.99270 8.14506 8.43665 8.64106 8.89176 8.98296 10.20836 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030081 B = 0.002313 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.584010 B =12102.804242 C =12808.498756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C -0.012 4.012 4 C 0.064 3.936 5 N -0.680 5.680 6 C 0.030 3.970 7 C 0.116 3.884 8 H 0.103 0.897 9 O -0.541 6.541 10 C 0.038 3.962 11 O -0.318 6.318 12 C -0.010 4.010 13 C -0.175 4.175 14 C -0.134 4.134 15 C 0.087 3.913 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.801 5.801 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.195 4.195 25 C -0.112 4.112 26 H 0.217 0.783 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.344 0.656 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.372 0.628 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.279 0.721 40 H 0.100 0.900 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 0.538 -12.430 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.185 4.185 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.311 5.311 6 C -0.099 4.099 7 C 0.056 3.944 8 H 0.121 0.879 9 O -0.345 6.345 10 C -0.039 4.039 11 O -0.234 6.234 12 C -0.053 4.053 13 C -0.193 4.193 14 C -0.154 4.154 15 C 0.084 3.916 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.427 5.427 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.215 4.215 25 C -0.131 4.131 26 H 0.234 0.766 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.162 0.838 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.219 0.781 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.678 1.026 -12.894 18.825 hybrid contribution -0.735 -0.942 1.727 2.100 sum -14.413 0.084 -11.167 18.233 Atomic orbital electron populations 1.24929 0.96000 1.01422 1.00420 1.23057 0.94493 1.00260 1.00725 1.18659 0.84396 1.04194 0.97629 1.21882 0.87767 1.00896 0.96023 1.60311 1.06402 1.55298 1.09068 1.22581 0.95462 1.01195 0.90683 1.21829 0.90561 0.87148 0.94910 0.87877 1.86624 1.78083 1.15515 1.54299 1.23111 0.82819 1.00909 0.97088 1.85860 1.17636 1.88290 1.31581 1.18601 0.91723 1.10879 0.84132 1.20591 0.97516 1.07724 0.93516 1.20929 0.94747 1.03572 0.96145 1.17604 0.91704 0.89933 0.92320 1.19464 1.04577 1.35251 0.89999 0.90484 1.25878 0.94103 0.93085 1.01129 1.69840 1.20920 1.23753 1.28178 0.86335 0.79154 0.80695 0.80736 1.19626 1.20150 1.18482 1.20610 0.97868 1.10102 0.92928 1.19623 0.90670 1.05028 0.97754 0.76637 0.88432 0.89578 0.94838 0.90507 0.83791 0.93886 0.90161 0.78140 0.92545 0.92752 0.88939 0.86193 0.91029 0.88175 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.18 -1.60 13.34 -37.12 -0.50 -2.09 16 3 C -0.01 -0.09 5.96 -29.52 -0.18 -0.26 16 4 C 0.06 0.50 5.64 -3.83 -0.02 0.48 16 5 N -0.68 -6.00 6.45 -113.79 -0.73 -6.73 16 6 C 0.03 0.29 5.32 -3.83 -0.02 0.27 16 7 C 0.12 1.42 3.43 -26.74 -0.09 1.33 16 8 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 9 O -0.54 -7.42 13.25 -40.09 -0.53 -7.96 16 10 C 0.04 0.58 4.36 37.16 0.16 0.75 16 11 O -0.32 -6.49 10.09 -23.60 -0.24 -6.73 16 12 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 13 C -0.17 -4.08 8.96 -39.83 -0.36 -4.44 16 14 C -0.13 -3.49 8.64 -39.25 -0.34 -3.82 16 15 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 16 C -0.46 -12.29 9.04 -37.83 -0.34 -12.63 16 17 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 18 C 0.07 1.87 5.13 -17.34 -0.09 1.79 16 19 N -0.80 -20.70 10.97 55.54 0.61 -20.09 16 20 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 25 C -0.11 -2.64 9.92 -39.83 -0.40 -3.03 16 26 H 0.22 0.95 7.80 -54.09 -0.42 0.53 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.34 2.73 8.73 -39.29 -0.34 2.39 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.37 4.00 9.05 45.56 0.41 4.41 16 35 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 36 H 0.05 0.81 7.64 -51.93 -0.40 0.42 16 37 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 38 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 40 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 41 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -30.38 355.34 -8.56 -38.94 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.15 Total: 10.32 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -2.83 Total: -26.73 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: -0.12 Total: -26.82 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.77 Total: -14.68 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.38 -8.56 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336778675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.502 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds