Wall clock time and date at job start Tue Mar 31 2020 07:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33017 * 1 3 3 C 1.50700 * 119.99721 * 2 1 4 4 C 1.52999 * 109.46718 * 95.00136 * 3 2 1 5 5 C 1.47064 * 119.99727 * 180.02562 * 2 1 3 6 6 O 1.21624 * 120.00306 * 359.97438 * 5 2 1 7 7 N 1.34783 * 119.99473 * 180.02562 * 5 2 1 8 8 C 1.39826 * 119.99525 * 184.62505 * 7 5 2 9 9 C 1.38960 * 120.04046 * 144.87950 * 8 7 5 10 10 C 1.38119 * 120.03391 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.12978 * 359.70319 * 10 9 8 12 12 C 1.38775 * 120.08819 * 0.54836 * 11 10 9 13 13 O 1.35893 * 120.01801 * 179.75150 * 12 11 10 14 14 C 1.42889 * 117.00305 * 359.72211 * 13 12 11 15 15 C 1.53003 * 109.47415 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47319 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00198 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99961 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00132 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47110 * 89.99699 * 20 18 16 22 22 H 1.48495 * 109.47136 * 209.99867 * 20 18 16 23 23 H 1.48497 * 109.46742 * 330.00020 * 20 18 16 24 24 C 1.38624 * 119.96070 * 359.47125 * 12 11 10 25 25 H 1.07994 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.08009 * 119.99891 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46952 * 215.00163 * 3 2 1 28 28 H 1.09004 * 109.47190 * 334.99717 * 3 2 1 29 29 H 1.08997 * 109.47027 * 299.99165 * 4 3 2 30 30 H 1.08994 * 109.47299 * 60.00290 * 4 3 2 31 31 H 1.09001 * 109.46615 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00035 * 4.62405 * 7 5 2 33 33 H 1.07997 * 119.98403 * 0.02562 * 9 8 7 34 34 H 1.08000 * 119.93055 * 179.97438 * 10 9 8 35 35 H 1.08000 * 119.95825 * 180.27560 * 11 10 9 36 36 H 1.09008 * 109.47475 * 300.00091 * 14 13 12 37 37 H 1.09005 * 109.47553 * 60.00132 * 14 13 12 38 38 H 1.08998 * 109.47171 * 300.00093 * 15 14 13 39 39 H 1.08995 * 109.47184 * 59.99928 * 15 14 13 40 40 H 0.97002 * 120.00272 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.06375 * 180.23018 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0836 1.3051 0.0000 4 6 2.4474 1.6839 1.4370 5 6 2.0654 -1.2736 -0.0006 6 8 1.4573 -2.3269 -0.0006 7 7 3.4133 -1.2736 0.0000 8 6 4.1124 -2.4805 -0.0982 9 6 5.3126 -2.5344 -0.7965 10 6 6.0028 -3.7268 -0.8939 11 6 5.5053 -4.8675 -0.2924 12 6 4.3046 -4.8208 0.4018 13 8 3.8143 -5.9444 0.9883 14 6 4.5839 -7.1397 0.8451 15 6 3.8783 -8.2902 1.5658 16 6 4.6897 -9.5510 1.4142 17 1 5.6163 -9.5335 0.8596 18 6 4.2497 -10.7267 1.9844 19 7 4.9576 -11.8271 1.8516 20 14 2.6474 -10.7569 2.9443 21 1 1.5253 -11.0732 2.0245 22 1 2.7253 -11.7933 4.0049 23 1 2.4180 -9.4282 3.5663 24 6 3.6086 -3.6262 0.5015 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 2.9943 1.1989 -0.5895 28 1 1.4586 2.0855 -0.4344 29 1 1.5367 1.7902 2.0264 30 1 3.0724 0.9036 1.8713 31 1 2.9928 2.6276 1.4370 32 1 3.8982 -0.4363 0.0684 33 1 5.7059 -1.6435 -1.2633 34 1 6.9352 -3.7669 -1.4373 35 1 6.0496 -5.7974 -0.3665 36 1 4.6854 -7.3821 -0.2129 37 1 5.5722 -6.9899 1.2798 38 1 3.7765 -8.0482 2.6237 39 1 2.8902 -8.4399 1.1307 40 1 4.6483 -12.6542 2.2531 41 1 2.6759 -3.5871 1.0446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348547985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:25 Heat of formation + Delta-G solvation = -39.200835 kcal Electronic energy + Delta-G solvation = -21818.075159 eV Core-core repulsion = 18470.530801 eV Total energy + Delta-G solvation = -3347.544358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80801 -39.40370 -37.33122 -35.85537 -34.60757 -33.29514 -31.10308 -30.64711 -29.83830 -29.12903 -25.35331 -24.62136 -23.58347 -22.47445 -21.70404 -20.34993 -19.50651 -18.32965 -17.22579 -16.75703 -16.19150 -15.66881 -15.62034 -15.38224 -15.17796 -14.66846 -14.41763 -14.09324 -14.05149 -13.42510 -13.31717 -13.14899 -12.86371 -12.63167 -12.52804 -11.91219 -11.87866 -11.76659 -11.50721 -11.43751 -10.91814 -10.87646 -10.34974 -10.17073 -9.96754 -9.90456 -9.80457 -9.76821 -9.31594 -8.59882 -8.29883 -7.86372 -6.11234 -4.11930 0.92050 1.49255 1.61276 2.81038 2.96372 3.31670 3.38507 3.45073 3.78375 3.94178 4.27565 4.33440 4.41976 4.64514 4.83370 4.98014 5.10181 5.16321 5.20553 5.23145 5.33826 5.36018 5.43289 5.47617 5.64878 5.72247 5.85598 5.92998 5.94676 5.95736 5.98388 6.28583 6.35097 6.44478 6.52716 6.67380 6.91061 7.14238 7.19960 7.26875 7.65144 7.90964 7.95999 8.41136 8.89396 9.49336 11.01244 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.002995 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.197274 B = 9346.662699 C =10258.932223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.182 4.182 3 C -0.090 4.090 4 C -0.153 4.153 5 C 0.548 3.452 6 O -0.513 6.513 7 N -0.667 5.667 8 C 0.174 3.826 9 C -0.194 4.194 10 C -0.061 4.061 11 C -0.223 4.223 12 C 0.162 3.838 13 O -0.316 6.316 14 C 0.072 3.928 15 C -0.010 4.010 16 C -0.526 4.526 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.162 4.162 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.410 0.590 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.266 0.734 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 29.891 -4.563 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.185 4.185 3 C -0.127 4.127 4 C -0.211 4.211 5 C 0.338 3.662 6 O -0.389 6.389 7 N -0.313 5.313 8 C 0.080 3.920 9 C -0.214 4.214 10 C -0.080 4.080 11 C -0.243 4.243 12 C 0.114 3.886 13 O -0.229 6.229 14 C -0.002 4.002 15 C -0.047 4.047 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.183 4.183 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.247 0.753 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.799 28.933 -4.403 29.511 hybrid contribution -0.280 0.151 0.352 0.475 sum -4.079 29.083 -4.051 29.646 Atomic orbital electron populations 1.24689 0.94488 1.03606 0.90300 1.21568 0.95786 0.93634 1.07491 1.20617 1.00168 0.93782 0.98143 1.21822 1.02096 1.01606 0.95535 1.18603 0.81730 0.89792 0.76114 1.90866 1.67918 1.32611 1.47478 1.43365 1.06519 1.08365 1.73004 1.17302 0.92496 0.85562 0.96654 1.20650 0.97100 0.99040 1.04638 1.20673 0.98775 0.91439 0.97129 1.21418 0.97839 1.00458 1.04552 1.18936 0.91366 0.87271 0.91033 1.86137 1.49986 1.16594 1.70195 1.23098 0.94757 0.81457 1.00879 1.19591 0.96911 0.91910 0.96295 1.20840 1.08791 0.91345 1.35389 0.90729 1.24928 0.97168 0.95265 0.95642 1.69893 1.38754 1.00045 1.44956 0.86759 0.83987 0.78333 0.80222 1.20035 1.21199 1.18721 1.20413 1.02925 0.89958 1.04997 0.86522 0.86381 0.91026 0.90224 0.92162 0.92434 0.91906 0.75324 0.86077 0.85567 0.84886 0.92447 0.92414 0.95394 0.95786 0.92470 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 13.90 28.92 0.40 -0.27 16 2 C -0.18 -1.49 5.25 -102.86 -0.54 -2.03 16 3 C -0.09 -0.45 5.51 -27.88 -0.15 -0.60 16 4 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 5 C 0.55 6.64 7.59 -12.68 -0.10 6.55 16 6 O -0.51 -8.49 13.65 5.26 0.07 -8.42 16 7 N -0.67 -7.09 5.26 -10.95 -0.06 -7.15 16 8 C 0.17 2.37 6.30 -83.74 -0.53 1.85 16 9 C -0.19 -2.30 9.96 -39.36 -0.39 -2.69 16 10 C -0.06 -0.78 10.03 -39.63 -0.40 -1.18 16 11 C -0.22 -3.51 9.04 -39.39 -0.36 -3.87 16 12 C 0.16 2.95 6.68 -39.24 -0.26 2.69 16 13 O -0.32 -6.65 10.13 -19.40 -0.20 -6.84 16 14 C 0.07 1.54 4.68 37.16 0.17 1.72 16 15 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 16 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 17 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 20 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 24 C -0.16 -2.77 8.63 -39.24 -0.34 -3.11 16 25 H 0.12 0.50 8.02 -52.49 -0.42 0.07 16 26 H 0.12 1.04 7.49 -52.48 -0.39 0.65 16 27 H 0.07 0.29 7.04 -51.93 -0.37 -0.07 16 28 H 0.08 0.29 8.01 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.41 2.87 7.07 -40.82 -0.29 2.58 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 36 H 0.06 1.18 7.67 -51.92 -0.40 0.78 16 37 H 0.06 1.17 7.65 -51.93 -0.40 0.78 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.14 2.66 6.22 -52.49 -0.33 2.34 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -34.07 345.28 -7.35 -41.42 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.80 Total: 0.30 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.67 Total: -15.07 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.72 Total: -33.99 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.12 Total: -15.26 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.07 -7.35 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348547985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.219 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds