Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00148 * 2 1 4 4 C 1.50702 * 119.99486 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47105 * 95.00378 * 4 2 1 6 6 C 1.50702 * 109.47105 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99960 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08004 * 119.99901 * 180.02562 * 1 2 3 26 26 H 1.07992 * 119.99776 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46573 * 270.00276 * 3 2 1 28 28 H 1.08997 * 109.46800 * 30.00427 * 3 2 1 29 29 H 1.08997 * 109.46561 * 150.00145 * 3 2 1 30 30 H 1.08998 * 109.47596 * 334.99425 * 4 2 1 31 31 H 1.09005 * 109.46667 * 214.99613 * 4 2 1 32 32 H 1.08998 * 109.47672 * 59.99093 * 5 4 2 33 33 H 1.09005 * 109.46733 * 299.99195 * 5 4 2 34 34 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 36 36 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4274 -1.6833 -1.4378 6 6 3.1802 -2.9889 -1.4384 7 8 3.4041 -3.5603 -0.3924 8 7 3.6056 -3.5208 -2.6013 9 6 4.3380 -4.7897 -2.6020 10 6 4.6963 -5.1621 -4.0175 11 6 5.8945 -4.7359 -4.5610 12 6 6.2260 -5.0760 -5.8578 13 6 5.3544 -5.8465 -6.6165 14 8 5.6777 -6.1828 -7.8913 15 6 6.9070 -5.8359 -8.3229 16 1 7.5535 -5.2436 -7.6924 17 6 7.3412 -6.2397 -9.5764 18 7 6.5539 -6.9616 -10.3442 19 14 9.0446 -5.7597 -10.1740 20 1 9.7267 -4.9535 -9.1299 21 1 9.8363 -6.9854 -10.4494 22 1 8.9250 -4.9578 -11.4183 23 6 4.1491 -6.2677 -6.0700 24 6 3.8260 -5.9290 -4.7707 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0647 0.5139 29 1 3.0160 1.1746 0.5138 30 1 1.4386 -2.0857 0.4334 31 1 2.9742 -1.1992 0.5889 32 1 3.0523 -0.9028 -1.8718 33 1 1.5166 -1.7894 -2.0273 34 1 3.4269 -3.0636 -3.4380 35 1 3.7127 -5.5702 -2.1684 36 1 5.2485 -4.6839 -2.0122 37 1 6.5720 -4.1372 -3.9704 38 1 7.1619 -4.7432 -6.2814 39 1 6.8575 -7.2437 -11.2212 40 1 3.4673 -6.8631 -6.6590 41 1 2.8909 -6.2600 -4.3437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357901111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = -41.333667 kcal Electronic energy + Delta-G solvation = -21244.423901 eV Core-core repulsion = 17896.787057 eV Total energy + Delta-G solvation = -3347.636844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83618 -39.06564 -37.03130 -36.53767 -34.40706 -32.40641 -31.61981 -30.30815 -29.78035 -27.57104 -26.17948 -25.20421 -23.77780 -22.08009 -20.65863 -20.32607 -18.67991 -18.10173 -17.31140 -16.84564 -15.97421 -15.87093 -14.99038 -14.88260 -14.62651 -14.31264 -14.22970 -13.88866 -13.66800 -13.56193 -13.35585 -13.06362 -12.81405 -12.56735 -12.30168 -12.05645 -11.98534 -11.69580 -11.43414 -11.29184 -11.12355 -11.00155 -10.80366 -10.71571 -10.49242 -9.91290 -9.44790 -9.30321 -8.97651 -8.93183 -8.31233 -7.34923 -6.55105 -4.13963 1.90382 2.06352 2.10388 2.65829 3.05733 3.08208 3.13781 3.41290 3.88540 4.42993 4.55058 4.61988 4.80178 4.95959 4.99073 5.03280 5.15221 5.22522 5.26276 5.32430 5.40079 5.43898 5.61358 5.63896 5.65037 5.72497 5.78304 5.91686 5.92318 6.09830 6.32413 6.35050 6.50337 6.57788 6.59176 6.77887 6.93475 7.11865 7.24822 7.32855 7.58621 7.69467 7.89680 8.25464 8.90341 9.58383 10.62473 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027798 B = 0.002399 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.015085 B =11666.879077 C =11992.480943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.135 4.135 6 C 0.507 3.493 7 O -0.550 6.550 8 N -0.723 5.723 9 C 0.178 3.822 10 C -0.215 4.215 11 C -0.051 4.051 12 C -0.237 4.237 13 C 0.160 3.840 14 O -0.173 6.173 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.943 3.057 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.195 4.195 24 C -0.055 4.055 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 12.085 14.894 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.175 4.175 6 C 0.294 3.706 7 O -0.428 6.428 8 N -0.374 5.374 9 C 0.056 3.944 10 C -0.216 4.216 11 C -0.070 4.070 12 C -0.256 4.256 13 C 0.105 3.895 14 O -0.076 6.076 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.214 4.214 24 C -0.073 4.073 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.322 11.426 15.215 20.388 hybrid contribution 0.799 0.432 -0.861 1.251 sum -6.523 11.858 14.354 19.728 Atomic orbital electron populations 1.23717 0.95251 1.01870 1.02594 1.21807 0.95453 0.95762 0.99498 1.20890 1.00244 0.94484 1.02199 1.20428 1.00802 0.94149 0.95391 1.21642 1.01300 0.95345 0.99238 1.20721 0.79300 0.86851 0.83743 1.90687 1.57467 1.63066 1.31574 1.46390 1.57367 1.24672 1.09007 1.19971 0.95730 0.84648 0.94052 1.19215 0.97927 1.08592 0.95897 1.20640 0.95065 0.96908 0.94369 1.21163 1.02564 1.06329 0.95558 1.19442 0.93047 0.91702 0.85262 1.83978 1.33582 1.68671 1.21358 1.21407 0.89819 1.34273 1.01430 0.88859 1.25330 0.99880 0.96039 0.95268 1.70042 1.36121 1.33270 1.09885 0.85622 0.80048 0.78573 0.79051 1.19041 1.20044 1.20064 1.20216 0.97580 1.07652 0.95997 1.20532 0.97683 0.96155 0.92973 0.88431 0.88554 0.91357 0.91935 0.91741 0.90579 0.90509 0.88869 0.88896 0.76366 0.91612 0.91644 0.87420 0.85404 0.91908 0.86362 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 13.89 29.01 0.40 -1.07 16 2 C -0.13 -0.99 5.31 -101.07 -0.54 -1.53 16 3 C -0.12 -0.80 10.03 36.01 0.36 -0.44 16 4 C -0.07 -0.64 4.67 -27.88 -0.13 -0.77 16 5 C -0.14 -1.19 5.68 -27.88 -0.16 -1.35 16 6 C 0.51 6.27 7.83 -10.99 -0.09 6.19 16 7 O -0.55 -8.84 15.98 5.56 0.09 -8.75 16 8 N -0.72 -8.68 5.55 -61.47 -0.34 -9.02 16 9 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 10 C -0.21 -3.40 5.25 -104.58 -0.55 -3.95 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 12 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.17 -4.77 9.76 0.05 0.00 -4.77 16 15 C -0.39 -10.63 9.49 30.89 0.29 -10.34 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 19 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.20 -3.89 9.99 -39.39 -0.39 -4.29 16 24 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 25 H 0.10 0.71 7.99 -52.48 -0.42 0.29 16 26 H 0.10 0.62 8.04 -52.49 -0.42 0.20 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 31 H 0.08 0.76 8.06 -51.93 -0.42 0.35 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.40 4.21 8.46 -40.82 -0.35 3.86 16 35 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -30.87 355.01 -7.41 -38.29 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.94 Total: 6.28 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.31 Total: -18.48 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.42 Total: -32.81 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.87 -7.41 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357901111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.048 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds