Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.46995 * 2 1 4 4 C 1.46896 * 111.00094 * 54.10570 * 3 2 1 5 5 C 1.50702 * 109.47246 * 186.95141 * 4 3 2 6 6 C 1.38634 * 119.74861 * 269.72969 * 5 4 3 7 7 C 1.37618 * 120.25004 * 179.72382 * 6 5 4 8 8 C 1.40716 * 119.74023 * 0.56228 * 7 6 5 9 9 C 1.41399 * 120.24290 * 179.68685 * 8 7 6 10 10 H 1.07989 * 120.00055 * 207.49218 * 9 8 7 11 11 C 1.39945 * 119.99862 * 27.48975 * 9 8 7 12 12 N 1.30832 * 120.00190 * 11.99347 * 11 9 8 13 13 Si 1.86802 * 119.99961 * 191.99892 * 11 9 8 14 14 H 1.48495 * 109.46920 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47103 * 120.00125 * 13 11 9 16 16 H 1.48505 * 109.46805 * 239.99668 * 13 11 9 17 17 C 1.40716 * 119.51553 * 359.70644 * 8 7 6 18 18 C 1.37618 * 119.74114 * 0.02562 * 17 8 7 19 19 C 1.50703 * 109.47205 * 240.00111 * 2 1 3 20 20 O 1.20827 * 119.99866 * 265.23641 * 19 2 1 21 21 O 1.34230 * 120.00222 * 85.23638 * 19 2 1 22 22 C 1.52996 * 109.47583 * 119.99839 * 2 1 3 23 23 C 1.53009 * 117.49523 * 17.02237 * 22 2 1 24 24 C 1.53001 * 117.49880 * 308.36676 * 22 2 1 25 25 H 1.08998 * 109.47019 * 60.00306 * 1 2 3 26 26 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47033 * 300.00012 * 1 2 3 28 28 H 1.00904 * 111.00037 * 290.14672 * 3 2 1 29 29 H 1.08999 * 109.46749 * 306.94972 * 4 3 2 30 30 H 1.08999 * 109.47398 * 66.94692 * 4 3 2 31 31 H 1.08009 * 119.87291 * 359.97104 * 6 5 4 32 32 H 1.07998 * 120.12770 * 180.27888 * 7 6 5 33 33 H 0.96997 * 119.99826 * 180.02562 * 12 11 9 34 34 H 1.07996 * 120.12761 * 179.97438 * 17 8 7 35 35 H 1.08000 * 119.87224 * 180.02562 * 18 17 8 36 36 H 0.96700 * 117.00071 * 180.02562 * 21 19 2 37 37 H 1.08998 * 115.55537 * 162.68497 * 22 2 1 38 38 H 1.08997 * 117.49790 * 359.97438 * 23 22 2 39 39 H 1.08998 * 117.49966 * 145.02366 * 23 22 2 40 40 H 1.09001 * 117.49800 * 214.97732 * 24 22 2 41 41 H 1.09006 * 117.50026 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4371 2.1494 1.1110 5 6 1.8247 3.5998 0.9806 6 6 2.9855 4.0585 1.5840 7 6 3.3524 5.3797 1.4669 8 6 2.5379 6.2686 0.7411 9 6 2.9012 7.6297 0.6196 10 1 2.1389 8.3816 0.4790 11 6 4.2487 8.0024 0.6815 12 7 5.1837 7.0896 0.6154 13 14 4.7124 9.8033 0.8587 14 1 3.4794 10.6291 0.9101 15 1 5.4889 9.9936 2.1100 16 1 5.5378 10.2185 -0.3040 17 6 1.3590 5.7931 0.1376 18 6 1.0148 4.4666 0.2632 19 6 2.0323 -0.7104 -1.2305 20 8 2.3157 -1.8838 -1.1773 21 8 2.1651 -0.0396 -2.3856 22 6 2.0401 -0.7212 1.2492 23 6 1.0521 -1.6146 2.0020 24 6 1.4814 -0.2731 2.6012 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8343 1.8341 -0.8844 29 1 0.3511 2.0597 1.0835 30 1 1.8102 1.7571 2.0570 31 1 3.6064 3.3755 2.1449 32 1 4.2594 5.7339 1.9340 33 1 6.1176 7.3480 0.6587 34 1 0.7265 6.4667 -0.4213 35 1 0.1107 4.0993 -0.1995 36 1 2.4906 -0.5379 -3.1477 37 1 3.0819 -1.0398 1.2157 38 1 0.0386 -1.6882 1.6076 39 1 1.4440 -2.5206 2.4642 40 1 2.1557 -0.2971 3.4573 41 1 0.7508 0.5359 2.6008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604350443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = -39.268950 kcal Electronic energy + Delta-G solvation = -22825.452688 eV Core-core repulsion = 19477.905376 eV Total energy + Delta-G solvation = -3347.547312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.81002 -38.69444 -37.48726 -36.13132 -34.79363 -33.55103 -31.11852 -29.31607 -28.87685 -26.86682 -25.16768 -23.24979 -22.75856 -22.20915 -20.95518 -19.82974 -19.07501 -17.95988 -17.28781 -17.15457 -15.97714 -15.69823 -15.30371 -14.94649 -14.37032 -14.06822 -13.89052 -13.76317 -13.34735 -13.11239 -12.57970 -12.37800 -12.35243 -11.93556 -11.80889 -11.62287 -11.53636 -11.32986 -11.20832 -11.05158 -10.89466 -10.77595 -10.44801 -10.38001 -10.16669 -10.03233 -9.57367 -9.32926 -9.18320 -8.19279 -7.44454 -7.26980 -6.70605 -4.36688 2.14317 2.73162 2.92513 3.06798 3.08634 3.13227 3.15695 3.77230 3.94428 4.38705 4.47962 4.68676 4.76407 4.95242 4.97038 5.12288 5.20598 5.44547 5.62011 5.68366 5.69313 5.74628 5.81938 5.92184 5.99522 6.08158 6.18056 6.25595 6.34330 6.44295 6.46491 6.95813 7.08783 7.17790 7.29932 7.36424 7.60059 7.63644 7.85149 7.91406 8.07086 8.13706 8.31172 8.66189 8.90875 8.98015 10.22771 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.003482 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.350568 B = 8039.566044 C = 8275.283171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.156 3.844 3 N -0.664 5.664 4 C 0.110 3.890 5 C -0.214 4.214 6 C -0.080 4.080 7 C -0.162 4.162 8 C 0.112 3.888 9 C -0.463 4.463 10 H 0.076 0.924 11 C 0.073 3.927 12 N -0.798 5.798 13 Si 0.909 3.091 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.224 4.224 18 C -0.087 4.087 19 C 0.498 3.502 20 O -0.515 6.515 21 O -0.509 6.509 22 C -0.124 4.124 23 C -0.180 4.180 24 C -0.174 4.174 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.354 0.646 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.279 0.721 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.408 0.592 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -12.130 -0.173 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.063 3.937 3 N -0.298 5.298 4 C -0.016 4.016 5 C -0.216 4.216 6 C -0.099 4.099 7 C -0.182 4.182 8 C 0.109 3.891 9 C -0.493 4.493 10 H 0.094 0.906 11 C -0.143 4.143 12 N -0.424 5.424 13 Si 0.734 3.266 14 H -0.185 1.185 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.244 4.244 18 C -0.106 4.106 19 C 0.340 3.660 20 O -0.402 6.402 21 O -0.320 6.320 22 C -0.143 4.143 23 C -0.217 4.217 24 C -0.210 4.210 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.266 0.734 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.417 -12.405 0.494 13.545 hybrid contribution -0.227 0.594 -0.976 1.165 sum -5.644 -11.810 -0.482 13.098 Atomic orbital electron populations 1.22684 0.94587 1.03319 1.04103 1.20162 0.93403 0.91454 0.88692 1.60883 1.61407 0.98887 1.08625 1.21086 0.95189 0.91397 0.93977 1.18928 0.99718 0.92755 1.10188 1.20532 0.94913 0.95471 0.98954 1.21385 1.01867 0.92681 1.02238 1.17651 0.90309 0.93311 0.87781 1.19633 0.92335 0.93275 1.44054 0.90567 1.25897 0.96433 0.99640 0.92368 1.69815 1.01510 1.35029 1.36001 0.86250 0.79309 0.82489 0.78584 1.18512 1.19781 1.20021 1.20970 1.01610 0.94609 1.07179 1.20365 0.97456 0.94047 0.98734 1.23289 0.73242 0.85330 0.84178 1.90689 1.46633 1.17517 1.85315 1.84562 1.78994 1.47461 1.20947 1.21840 0.99329 1.02531 0.90617 1.23181 0.99842 0.94769 1.03901 1.23255 1.03916 0.97882 0.95981 0.91434 0.91170 0.89687 0.82568 0.95473 0.90124 0.89374 0.86261 0.91012 0.89154 0.89922 0.73383 0.87087 0.88404 0.88750 0.88311 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 6.80 37.16 0.25 -1.84 16 2 C 0.16 2.06 0.92 -132.75 -0.12 1.93 16 3 N -0.66 -10.34 6.12 -102.40 -0.63 -10.96 16 4 C 0.11 1.78 4.12 -4.98 -0.02 1.76 16 5 C -0.21 -4.41 5.34 -104.33 -0.56 -4.97 16 6 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 7 C -0.16 -4.16 8.67 -38.87 -0.34 -4.50 16 8 C 0.11 2.95 5.56 -106.82 -0.59 2.35 16 9 C -0.46 -12.22 9.07 -37.74 -0.34 -12.56 16 10 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 11 C 0.07 1.84 5.24 -17.34 -0.09 1.75 16 12 N -0.80 -20.66 10.82 55.55 0.60 -20.06 16 13 Si 0.91 18.65 29.58 -169.99 -5.03 13.62 16 14 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 15 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 17 C -0.22 -5.38 9.80 -38.87 -0.38 -5.76 16 18 C -0.09 -1.86 9.67 -39.66 -0.38 -2.24 16 19 C 0.50 6.82 7.18 36.01 0.26 7.08 16 20 O -0.51 -8.01 17.03 -18.75 -0.32 -8.33 16 21 O -0.51 -5.92 12.54 -39.26 -0.49 -6.41 16 22 C -0.12 -1.59 4.57 -90.62 -0.41 -2.01 16 23 C -0.18 -1.89 9.71 -26.69 -0.26 -2.15 16 24 C -0.17 -1.95 7.82 -26.69 -0.21 -2.16 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.71 6.60 -51.93 -0.34 0.36 16 27 H 0.08 0.91 4.98 -51.93 -0.26 0.66 16 28 H 0.35 5.76 7.86 -39.29 -0.31 5.45 16 29 H 0.03 0.40 5.66 -51.93 -0.29 0.11 16 30 H 0.08 1.26 5.01 -51.93 -0.26 1.00 16 31 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 32 H 0.12 3.19 6.17 -52.49 -0.32 2.87 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.08 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.41 2.87 9.10 45.56 0.41 3.28 16 37 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.10 0.94 5.89 -51.93 -0.31 0.64 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.11 1.19 5.05 -51.93 -0.26 0.93 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -29.11 330.77 -8.91 -38.02 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -4.45 Total: 14.66 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -3.58 Total: -25.51 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: -0.03 Total: -31.02 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.81 Total: -14.74 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.11 -8.91 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604350443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.250 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds