Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35654 * 117.00034 * 2 1 4 4 C 1.38678 * 120.15766 * 0.02562 * 3 2 1 5 5 C 1.38072 * 120.09403 * 180.02562 * 4 3 2 6 6 C 1.38557 * 120.40170 * 359.97438 * 5 4 3 7 7 C 1.37775 * 120.30762 * 0.02562 * 6 5 4 8 8 C 1.39769 * 119.89744 * 0.02562 * 7 6 5 9 9 C 1.47434 * 120.19723 * 180.02562 * 8 7 6 10 10 O 1.21617 * 120.00598 * 126.10765 * 9 8 7 11 11 N 1.34783 * 119.99632 * 306.10110 * 9 8 7 12 12 C 1.36900 * 120.00213 * 182.90754 * 11 9 8 13 13 H 1.07992 * 120.00110 * 136.84436 * 12 11 9 14 14 C 1.39027 * 119.99926 * 316.84936 * 12 11 9 15 15 N 1.31378 * 120.00170 * 159.35219 * 14 12 11 16 16 Si 1.86801 * 120.00148 * 339.34799 * 14 12 11 17 17 H 1.48503 * 109.47141 * 92.48652 * 16 14 12 18 18 H 1.48492 * 109.47479 * 212.48815 * 16 14 12 19 19 H 1.48504 * 109.47091 * 332.49259 * 16 14 12 20 20 C 1.46504 * 119.99739 * 2.91686 * 11 9 8 21 21 C 1.54269 * 110.02488 * 232.14912 * 20 11 9 22 22 C 1.54966 * 104.15720 * 217.13484 * 21 20 11 23 23 C 1.54891 * 102.77670 * 37.89031 * 22 21 20 24 24 C 1.53870 * 110.03542 * 114.93382 * 20 11 9 25 25 H 1.08993 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47134 * 299.99717 * 1 2 3 27 27 H 1.09000 * 109.47033 * 59.99844 * 1 2 3 28 28 H 1.08000 * 119.95114 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.80331 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.85240 * 179.72618 * 6 5 4 31 31 H 1.07995 * 120.05523 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00291 * 180.02562 * 15 14 12 33 33 H 1.08996 * 110.01677 * 353.53512 * 20 11 9 34 34 H 1.08998 * 110.49174 * 335.78025 * 21 20 11 35 35 H 1.09003 * 110.48790 * 98.42724 * 21 20 11 36 36 H 1.08993 * 110.72346 * 279.57732 * 22 21 20 37 37 H 1.08997 * 110.92426 * 156.29398 * 22 21 20 38 38 H 1.09004 * 110.48870 * 203.40278 * 23 22 21 39 39 H 1.09002 * 110.60265 * 80.81593 * 23 22 21 40 40 H 1.09002 * 110.03101 * 238.56690 * 24 20 11 41 41 H 1.09001 * 110.03149 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2928 2.3738 0.0005 5 6 1.9210 3.6033 0.0000 6 6 3.3042 3.6840 -0.0005 7 6 4.0676 2.5371 -0.0011 8 6 3.4449 1.2858 -0.0016 9 6 4.2553 0.0541 -0.0016 10 8 4.0708 -0.7953 0.8490 11 7 5.2006 -0.1305 -0.9445 12 6 5.9122 -1.2994 -0.9807 13 1 6.1022 -1.7869 -1.9254 14 6 6.3904 -1.8589 0.1988 15 7 6.7035 -3.1341 0.2413 16 14 6.5877 -0.7975 1.7233 17 1 5.3514 -0.8730 2.5424 18 1 7.7407 -1.2866 2.5211 19 1 6.8279 0.6109 1.3182 20 6 5.4666 0.9200 -1.9305 21 6 5.4050 0.3340 -3.3562 22 6 6.5254 1.0820 -4.1222 23 6 7.6460 1.2013 -3.0596 24 6 6.8907 1.4715 -1.7420 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2142 2.3193 0.0005 29 1 1.3307 4.5078 0.0008 30 1 3.7864 4.6504 -0.0054 31 1 5.1454 2.6047 -0.0019 32 1 7.0367 -3.5246 1.0643 33 1 4.7379 1.7236 -1.8253 34 1 5.6055 -0.7372 -3.3376 35 1 4.4336 0.5334 -3.8090 36 1 6.1850 2.0685 -4.4370 37 1 6.8659 0.5009 -4.9791 38 1 8.3095 2.0330 -3.2965 39 1 8.2108 0.2714 -2.9918 40 1 6.8531 2.5431 -1.5460 41 1 7.3837 0.9579 -0.9166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057545615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = -27.417259 kcal Electronic energy + Delta-G solvation = -24374.042360 eV Core-core repulsion = 21027.008976 eV Total energy + Delta-G solvation = -3347.033384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.25013 -38.82173 -37.03731 -36.78996 -33.45096 -32.04293 -30.80389 -29.91299 -28.14102 -27.21477 -27.02327 -25.06000 -22.70990 -21.88229 -20.42408 -20.04679 -19.16515 -17.94261 -17.06792 -16.24198 -15.83774 -15.57521 -15.25142 -14.97215 -14.46663 -14.41270 -13.93338 -13.61120 -13.42300 -13.05661 -12.80919 -12.59209 -12.32705 -12.06016 -11.85303 -11.58349 -11.31940 -11.10694 -10.94824 -10.83146 -10.78059 -10.58499 -10.49533 -10.10482 -9.99703 -9.91422 -9.71766 -8.75179 -8.43486 -8.35862 -7.93209 -7.46674 -6.13043 -3.85084 1.35554 1.62305 3.36779 3.50604 3.52893 3.72944 3.77407 4.11174 4.51214 4.65270 4.92362 5.02530 5.14013 5.17949 5.19722 5.24340 5.26572 5.33605 5.48417 5.56521 5.60085 5.66470 5.79523 5.87854 6.02154 6.09268 6.12418 6.15249 6.21116 6.38797 6.39638 6.46526 6.50831 6.55198 6.64388 6.78865 6.93132 6.94338 6.99167 7.65121 7.92326 8.10950 8.87940 9.02479 9.51201 9.94383 10.92175 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.008369 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.107655 B = 3344.795370 C = 4270.469833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.291 6.291 3 C 0.162 3.838 4 C -0.217 4.217 5 C -0.079 4.079 6 C -0.164 4.164 7 C -0.066 4.066 8 C -0.131 4.131 9 C 0.491 3.509 10 O -0.530 6.530 11 N -0.448 5.448 12 C -0.338 4.338 13 H 0.097 0.903 14 C 0.095 3.905 15 N -0.864 5.864 16 Si 0.900 3.100 17 H -0.252 1.252 18 H -0.308 1.308 19 H -0.279 1.279 20 C 0.121 3.879 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.134 4.134 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.271 0.729 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 13.973 -4.760 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.203 6.203 3 C 0.115 3.885 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.183 4.183 7 C -0.084 4.084 8 C -0.135 4.135 9 C 0.281 3.719 10 O -0.411 6.411 11 N -0.169 5.169 12 C -0.464 4.464 13 H 0.114 0.886 14 C -0.114 4.114 15 N -0.499 5.499 16 Si 0.731 3.269 17 H -0.177 1.177 18 H -0.238 1.238 19 H -0.205 1.205 20 C 0.017 3.983 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.172 4.172 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.339 13.136 -4.250 15.635 hybrid contribution -0.118 0.681 0.763 1.029 sum -7.457 13.817 -3.487 16.083 Atomic orbital electron populations 1.23058 0.79160 1.03932 1.00702 1.86289 1.20479 1.26090 1.87423 1.18982 0.91012 0.84515 0.94013 1.21119 0.99754 0.92201 1.10469 1.20905 0.94572 0.96645 0.97666 1.20906 0.93794 0.98077 1.05485 1.21259 1.00209 0.90687 0.96285 1.19732 0.91253 0.95511 1.07000 1.17975 0.81295 0.86490 0.86188 1.90660 1.68592 1.44345 1.37528 1.43615 1.31098 1.15102 1.27088 1.18659 1.33897 0.98103 0.95744 0.88569 1.25289 0.92595 0.94945 0.98559 1.69746 1.40747 1.10800 1.28584 0.86622 0.76637 0.79926 0.83729 1.17717 1.23781 1.20455 1.21961 0.95995 0.90652 0.89716 1.22693 0.97515 1.02244 0.94430 1.22429 0.96271 0.99538 0.97587 1.22249 0.97216 1.01273 0.94642 1.22508 0.96406 0.99201 0.99076 0.88287 0.92930 0.92975 0.85455 0.86017 0.85844 0.85101 0.91918 0.90244 0.89440 0.92657 0.92323 0.92093 0.92708 0.91143 0.92821 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.71 9.69 -22.23 -0.22 -5.92 16 3 C 0.16 3.05 6.69 -38.68 -0.26 2.79 16 4 C -0.22 -3.11 9.03 -39.48 -0.36 -3.47 16 5 C -0.08 -1.01 10.03 -39.52 -0.40 -1.41 16 6 C -0.16 -2.25 10.02 -39.63 -0.40 -2.65 16 7 C -0.07 -1.14 7.42 -39.18 -0.29 -1.43 16 8 C -0.13 -2.74 4.85 -104.84 -0.51 -3.25 16 9 C 0.49 12.61 5.19 -12.51 -0.06 12.54 16 10 O -0.53 -15.86 12.10 1.70 0.02 -15.84 16 11 N -0.45 -11.06 2.05 -107.75 -0.22 -11.28 16 12 C -0.34 -9.54 8.46 -15.00 -0.13 -9.67 16 13 H 0.10 2.81 6.50 -52.49 -0.34 2.47 16 14 C 0.10 2.84 4.81 -17.45 -0.08 2.76 16 15 N -0.86 -26.75 13.95 55.50 0.77 -25.97 16 16 Si 0.90 24.75 24.85 -169.99 -4.22 20.53 16 17 H -0.25 -7.40 6.17 56.52 0.35 -7.05 16 18 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 19 H -0.28 -7.21 6.84 56.52 0.39 -6.83 16 20 C 0.12 2.37 2.48 -66.81 -0.17 2.20 16 21 C -0.13 -2.33 6.40 -25.03 -0.16 -2.49 16 22 C -0.12 -1.75 6.91 -24.70 -0.17 -1.92 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.39 5.81 -25.62 -0.15 -2.54 16 25 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.13 1.44 6.30 -52.49 -0.33 1.11 16 29 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.13 2.23 6.69 -52.49 -0.35 1.88 16 32 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 33 H 0.08 1.44 4.73 -51.93 -0.25 1.19 16 34 H 0.09 1.80 6.00 -51.93 -0.31 1.48 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 41 H 0.08 1.69 7.13 -51.93 -0.37 1.32 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -35.11 321.35 -7.07 -42.18 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.74 Total: 0.62 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.31 Total: -9.16 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.55 Total: -37.25 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.19 Total: -21.76 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.22 Total: 20.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.11 -7.07 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057545615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.761 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds