Wall clock time and date at job start Tue Mar 31 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35654 * 117.00034 * 2 1 4 4 C 1.38678 * 120.15766 * 0.02562 * 3 2 1 5 5 C 1.38072 * 120.09403 * 180.02562 * 4 3 2 6 6 C 1.38557 * 120.40170 * 359.97438 * 5 4 3 7 7 C 1.37775 * 120.30762 * 0.02562 * 6 5 4 8 8 C 1.39769 * 119.89744 * 0.02562 * 7 6 5 9 9 C 1.47434 * 120.19723 * 180.02562 * 8 7 6 10 10 O 1.21617 * 120.00598 * 126.10765 * 9 8 7 11 11 N 1.34783 * 119.99632 * 306.10110 * 9 8 7 12 12 C 1.36900 * 120.00213 * 182.90754 * 11 9 8 13 13 H 1.07992 * 120.00110 * 136.84436 * 12 11 9 14 14 C 1.39027 * 119.99926 * 316.84936 * 12 11 9 15 15 N 1.31378 * 120.00170 * 159.35219 * 14 12 11 16 16 Si 1.86801 * 120.00148 * 339.34799 * 14 12 11 17 17 H 1.48503 * 109.47141 * 92.48652 * 16 14 12 18 18 H 1.48492 * 109.47479 * 212.48815 * 16 14 12 19 19 H 1.48504 * 109.47091 * 332.49259 * 16 14 12 20 20 C 1.46504 * 119.99739 * 2.91686 * 11 9 8 21 21 C 1.54269 * 110.02488 * 232.14912 * 20 11 9 22 22 C 1.54966 * 104.15720 * 217.13484 * 21 20 11 23 23 C 1.54891 * 102.77670 * 37.89031 * 22 21 20 24 24 C 1.53870 * 110.03542 * 114.93382 * 20 11 9 25 25 H 1.08993 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47134 * 299.99717 * 1 2 3 27 27 H 1.09000 * 109.47033 * 59.99844 * 1 2 3 28 28 H 1.08000 * 119.95114 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.80331 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.85240 * 179.72618 * 6 5 4 31 31 H 1.07995 * 120.05523 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00291 * 180.02562 * 15 14 12 33 33 H 1.08996 * 110.01677 * 353.53512 * 20 11 9 34 34 H 1.08998 * 110.49174 * 335.78025 * 21 20 11 35 35 H 1.09003 * 110.48790 * 98.42724 * 21 20 11 36 36 H 1.08993 * 110.72346 * 279.57732 * 22 21 20 37 37 H 1.08997 * 110.92426 * 156.29398 * 22 21 20 38 38 H 1.09004 * 110.48870 * 203.40278 * 23 22 21 39 39 H 1.09002 * 110.60265 * 80.81593 * 23 22 21 40 40 H 1.09002 * 110.03101 * 238.56690 * 24 20 11 41 41 H 1.09001 * 110.03149 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2928 2.3738 0.0005 5 6 1.9210 3.6033 0.0000 6 6 3.3042 3.6840 -0.0005 7 6 4.0676 2.5371 -0.0011 8 6 3.4449 1.2858 -0.0016 9 6 4.2553 0.0541 -0.0016 10 8 4.0708 -0.7953 0.8490 11 7 5.2006 -0.1305 -0.9445 12 6 5.9122 -1.2994 -0.9807 13 1 6.1022 -1.7869 -1.9254 14 6 6.3904 -1.8589 0.1988 15 7 6.7035 -3.1341 0.2413 16 14 6.5877 -0.7975 1.7233 17 1 5.3514 -0.8730 2.5424 18 1 7.7407 -1.2866 2.5211 19 1 6.8279 0.6109 1.3182 20 6 5.4666 0.9200 -1.9305 21 6 5.4050 0.3340 -3.3562 22 6 6.5254 1.0820 -4.1222 23 6 7.6460 1.2013 -3.0596 24 6 6.8907 1.4715 -1.7420 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2142 2.3193 0.0005 29 1 1.3307 4.5078 0.0008 30 1 3.7864 4.6504 -0.0054 31 1 5.1454 2.6047 -0.0019 32 1 7.0367 -3.5246 1.0643 33 1 4.7379 1.7236 -1.8253 34 1 5.6055 -0.7372 -3.3376 35 1 4.4336 0.5334 -3.8090 36 1 6.1850 2.0685 -4.4370 37 1 6.8659 0.5009 -4.9791 38 1 8.3095 2.0330 -3.2965 39 1 8.2108 0.2714 -2.9918 40 1 6.8531 2.5431 -1.5460 41 1 7.3837 0.9579 -0.9166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057545615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:48 Heat of formation + Delta-G solvation = -51.279184 kcal Electronic energy + Delta-G solvation = -24375.077091 eV Core-core repulsion = 21027.008976 eV Total energy + Delta-G solvation = -3348.068114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72419 -40.35435 -38.51980 -38.22394 -35.39050 -34.03840 -32.24074 -31.09761 -29.51580 -28.67999 -28.22405 -26.91258 -24.22150 -23.11323 -21.98849 -21.44671 -20.82705 -19.48696 -18.58592 -17.91524 -17.24049 -17.16626 -16.64999 -16.43135 -15.93500 -15.68889 -15.60298 -15.32343 -15.01971 -14.67837 -14.39809 -14.13852 -13.88863 -13.50507 -13.32380 -13.03943 -12.74772 -12.60157 -12.46051 -12.24995 -12.10330 -12.02373 -11.83311 -11.82189 -11.77737 -11.41553 -11.28864 -10.76599 -10.43266 -9.85012 -9.51650 -9.18214 -8.42721 -6.12423 0.10989 0.44232 1.15957 1.28841 1.47001 1.99149 2.38825 2.43251 2.63775 2.82733 3.10291 3.73556 3.82409 3.87214 3.92688 4.04817 4.22251 4.24520 4.35966 4.39880 4.46973 4.53814 4.59390 4.64947 4.66487 4.73232 4.74109 4.90997 4.94146 5.05071 5.15732 5.25999 5.29432 5.37168 5.40066 5.48944 5.51819 5.59556 5.72800 5.84647 5.92917 6.48143 6.80539 6.93907 7.36931 7.92682 8.66403 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.008369 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.107655 B = 3344.795370 C = 4270.469833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.141 3.859 4 C -0.208 4.208 5 C -0.057 4.057 6 C -0.151 4.151 7 C -0.072 4.072 8 C -0.179 4.179 9 C 0.489 3.511 10 O -0.588 6.588 11 N -0.459 5.459 12 C -0.327 4.327 13 H 0.073 0.927 14 C 0.048 3.952 15 N -0.910 5.910 16 Si 0.948 3.052 17 H -0.285 1.285 18 H -0.302 1.302 19 H -0.257 1.257 20 C 0.115 3.885 21 C -0.134 4.134 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.134 4.134 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.161 0.839 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.127 0.873 32 H 0.270 0.730 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.082 19.496 -6.002 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.075 4.075 6 C -0.169 4.169 7 C -0.091 4.091 8 C -0.183 4.183 9 C 0.280 3.720 10 O -0.474 6.474 11 N -0.180 5.180 12 C -0.454 4.454 13 H 0.090 0.910 14 C -0.155 4.155 15 N -0.548 5.548 16 Si 0.778 3.222 17 H -0.213 1.213 18 H -0.231 1.231 19 H -0.181 1.181 20 C 0.012 3.988 21 C -0.172 4.172 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.172 4.172 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.179 0.821 29 H 0.190 0.810 30 H 0.183 0.817 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.008 18.709 -5.535 21.489 hybrid contribution 0.172 -0.923 1.080 1.431 sum -8.836 17.785 -4.455 20.353 Atomic orbital electron populations 1.23372 0.76258 1.05128 1.02829 1.86214 1.23798 1.27704 1.87830 1.19303 0.90652 0.85756 0.94897 1.21524 1.01263 0.91120 1.08760 1.21549 0.94596 0.97653 0.93674 1.21364 0.94277 0.98220 1.03021 1.21327 1.00469 0.90538 0.96792 1.19521 0.92010 0.94369 1.12417 1.18867 0.80894 0.87629 0.84591 1.90595 1.70017 1.47004 1.39736 1.43808 1.30889 1.15245 1.28045 1.18540 1.32960 0.99486 0.94412 0.90972 1.25867 0.93272 0.95638 1.00769 1.69827 1.43810 1.12039 1.29107 0.85827 0.74940 0.80214 0.81188 1.21292 1.23117 1.18142 1.22303 0.97746 0.89850 0.88862 1.22684 0.99810 1.00224 0.94465 1.22403 0.94099 1.00860 0.97002 1.22250 0.97713 1.01416 0.93796 1.22522 0.94966 1.00760 0.98943 0.87881 0.90993 0.90352 0.82111 0.80951 0.81667 0.85479 0.92044 0.88106 0.93464 0.91341 0.88890 0.90950 0.89115 0.93792 0.89160 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -13.59 9.69 -86.29 -0.84 -14.43 16 3 C 0.14 5.13 6.69 22.85 0.15 5.28 16 4 C -0.21 -5.04 9.03 22.34 0.20 -4.84 16 5 C -0.06 -1.07 10.03 22.31 0.22 -0.85 16 6 C -0.15 -3.26 10.02 22.24 0.22 -3.03 16 7 C -0.07 -2.31 7.42 22.53 0.17 -2.14 16 8 C -0.18 -7.44 4.85 -20.01 -0.10 -7.54 16 9 C 0.49 26.10 5.19 86.66 0.45 26.55 16 10 O -0.59 -37.41 12.10 -0.68 -0.01 -37.42 16 11 N -0.46 -23.59 2.05 -613.05 -1.26 -24.85 16 12 C -0.33 -19.66 8.46 84.09 0.71 -18.95 16 13 H 0.07 4.59 6.50 -2.91 -0.02 4.57 16 14 C 0.05 3.08 4.81 84.95 0.41 3.49 16 15 N -0.91 -60.19 13.95 21.68 0.30 -59.89 16 16 Si 0.95 54.13 24.85 68.60 1.70 55.83 16 17 H -0.29 -17.78 6.17 99.48 0.61 -17.16 16 18 H -0.30 -16.55 7.11 99.48 0.71 -15.84 16 19 H -0.26 -13.42 6.84 99.48 0.68 -12.74 16 20 C 0.12 4.46 2.48 45.71 0.11 4.58 16 21 C -0.13 -4.73 6.40 31.70 0.20 -4.53 16 22 C -0.11 -2.79 6.91 31.91 0.22 -2.57 16 23 C -0.11 -3.33 6.83 31.67 0.22 -3.12 16 24 C -0.13 -4.60 5.81 31.32 0.18 -4.42 16 25 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.07 1.43 7.66 -2.39 -0.02 1.41 16 27 H 0.08 1.44 7.66 -2.39 -0.02 1.43 16 28 H 0.16 2.73 6.30 -2.91 -0.02 2.72 16 29 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 30 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.13 4.03 6.69 -2.91 -0.02 4.01 16 32 H 0.27 16.97 8.31 -92.71 -0.77 16.20 16 33 H 0.10 3.47 4.73 -2.39 -0.01 3.46 16 34 H 0.05 2.04 6.00 -2.39 -0.01 2.03 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 2.41 7.90 -2.39 -0.02 2.40 16 41 H 0.04 1.74 7.13 -2.39 -0.02 1.72 16 Total: -1.00 -87.03 321.35 5.31 -81.72 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.91 Total: 9.57 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.49 Total: -10.54 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -0.95 Total: -84.74 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.84 Total: -51.85 kcal Atomic # 14 Polarization: 54.13 SS G_CDS: 1.70 Total: 55.83 kcal Total: -87.03 5.31 -81.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057545615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.439 kcal (2) G-P(sol) polarization free energy of solvation -87.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds