Wall clock time and date at job start Tue Mar 31 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 117.00255 * 2 1 4 4 C 1.39007 * 119.90622 * 179.97438 * 3 2 1 5 5 C 1.37685 * 120.09264 * 180.02562 * 4 3 2 6 6 C 1.39802 * 119.90727 * 0.02562 * 5 4 3 7 7 C 1.47491 * 120.09348 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00087 * 316.46356 * 7 6 5 9 9 N 1.34779 * 120.00096 * 136.74957 * 7 6 5 10 10 C 1.36898 * 120.00008 * 3.36554 * 9 7 6 11 11 H 1.07995 * 120.00054 * 124.43394 * 10 9 7 12 12 C 1.39028 * 120.00155 * 304.44134 * 10 9 7 13 13 N 1.31377 * 119.99856 * 346.20463 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 166.21084 * 12 10 9 15 15 H 1.48504 * 109.47005 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47028 * 119.99693 * 14 12 10 17 17 H 1.48496 * 109.46910 * 239.99778 * 14 12 10 18 18 C 1.46500 * 119.99561 * 183.37386 * 9 7 6 19 19 C 1.54267 * 110.02894 * 242.06523 * 18 9 7 20 20 C 1.54968 * 104.16082 * 217.13940 * 19 18 9 21 21 C 1.54888 * 102.77808 * 37.89132 * 20 19 18 22 22 C 1.53873 * 110.02861 * 124.85627 * 18 9 7 23 23 C 1.39798 * 119.80861 * 0.26921 * 6 5 4 24 24 C 1.37690 * 119.90678 * 359.47262 * 23 6 5 25 25 H 1.09000 * 109.47411 * 59.99412 * 1 2 3 26 26 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46990 * 299.99320 * 1 2 3 28 28 H 1.08000 * 119.95414 * 359.97438 * 4 3 2 29 29 H 1.08008 * 120.04518 * 179.97438 * 5 4 3 30 30 H 0.96996 * 120.00058 * 185.07324 * 13 12 10 31 31 H 1.08994 * 110.02164 * 3.45906 * 18 9 7 32 32 H 1.09005 * 110.49002 * 335.78868 * 19 18 9 33 33 H 1.09002 * 110.48354 * 98.43222 * 19 18 9 34 34 H 1.08992 * 110.71992 * 279.57398 * 20 19 18 35 35 H 1.09005 * 110.91933 * 156.29684 * 20 19 18 36 36 H 1.08998 * 110.48878 * 203.40405 * 21 20 19 37 37 H 1.09004 * 110.59702 * 80.81276 * 21 20 19 38 38 H 1.09004 * 110.03271 * 238.56274 * 22 18 9 39 39 H 1.08999 * 110.04054 * 359.94289 * 22 18 9 40 40 H 1.07999 * 120.04421 * 179.72800 * 23 6 5 41 41 H 1.07989 * 119.95382 * 180.23244 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4335 1.2796 0.0005 5 6 4.0626 2.5044 0.0011 6 6 3.3031 3.6781 0.0016 7 6 3.9728 4.9922 0.0016 8 8 4.9295 5.1872 0.7268 9 7 3.5210 5.9788 -0.7978 10 6 2.3995 5.7841 -1.5583 11 1 1.5652 6.4646 -1.4742 12 6 2.3345 4.7102 -2.4388 13 7 3.4255 4.0459 -2.7462 14 14 0.6961 4.2119 -3.1849 15 1 -0.3716 5.1127 -2.6811 16 1 0.7741 4.3150 -4.6643 17 1 0.3833 2.8117 -2.8020 18 6 4.2302 7.2595 -0.8528 19 6 3.3075 8.3958 -0.3657 20 6 3.6659 9.5939 -1.2810 21 6 3.9001 8.9176 -2.6546 22 6 4.6072 7.5911 -2.3074 23 6 1.9072 3.6026 0.0073 24 6 1.2861 2.3738 0.0014 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 4.0194 0.3724 0.0014 29 1 5.1413 2.5582 0.0019 30 1 3.3939 3.3446 -3.4156 31 1 5.1272 7.2162 -0.2352 32 1 2.2610 8.1185 -0.4927 33 1 3.5157 8.6357 0.6770 34 1 4.5736 10.0868 -0.9333 35 1 2.8397 10.3029 -1.3354 36 1 4.5403 9.5384 -3.2813 37 1 2.9506 8.7244 -3.1538 38 1 5.6872 7.7095 -2.3955 39 1 4.2633 6.7987 -2.9722 40 1 1.3168 4.5069 0.0122 41 1 0.2078 2.3146 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057545620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:56 Heat of formation + Delta-G solvation = -45.689589 kcal Electronic energy + Delta-G solvation = -24095.342990 eV Core-core repulsion = 20747.517259 eV Total energy + Delta-G solvation = -3347.825731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.68873 -38.83146 -37.04473 -35.87508 -34.11445 -31.36800 -30.38727 -29.49817 -27.93561 -27.37638 -26.52535 -24.83971 -22.35511 -21.73226 -20.11350 -19.70824 -19.22677 -17.65267 -16.94260 -15.88850 -15.42411 -15.37663 -15.36408 -14.58767 -14.50832 -13.98256 -13.71469 -13.42679 -12.90454 -12.87262 -12.62472 -12.44348 -12.09807 -11.91624 -11.60318 -11.34842 -11.30190 -11.12050 -10.85652 -10.62703 -10.49255 -10.42473 -10.35036 -10.30786 -10.10215 -9.91037 -9.64055 -8.96992 -8.49930 -8.17243 -7.41607 -7.09302 -6.37437 -4.19636 2.04333 2.20193 3.10302 3.18066 3.21418 3.69269 3.96993 4.11760 4.61668 4.89709 5.04198 5.24652 5.34568 5.35318 5.41772 5.48322 5.57290 5.63102 5.65414 6.07735 6.11708 6.14784 6.21044 6.25699 6.27557 6.31891 6.41309 6.45333 6.51935 6.55456 6.74832 6.81147 6.95697 6.98403 7.05333 7.17385 7.32186 7.42708 7.46560 7.49362 7.96623 8.02346 8.61618 8.95177 9.57448 10.00455 10.67723 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.006293 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.863576 B = 4448.308412 C = 5137.872392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.117 3.883 4 C -0.167 4.167 5 C -0.032 4.032 6 C -0.078 4.078 7 C 0.553 3.447 8 O -0.608 6.608 9 N -0.438 5.438 10 C -0.353 4.353 11 H 0.082 0.918 12 C 0.070 3.930 13 N -0.844 5.844 14 Si 0.890 3.110 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.135 3.865 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.026 4.026 24 C -0.227 4.227 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.270 0.730 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -0.318 1.401 5.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.073 3.927 4 C -0.186 4.186 5 C -0.051 4.051 6 C -0.081 4.081 7 C 0.344 3.656 8 O -0.494 6.494 9 N -0.157 5.157 10 C -0.481 4.481 11 H 0.099 0.901 12 C -0.140 4.140 13 N -0.476 5.476 14 Si 0.716 3.284 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.031 3.969 19 C -0.166 4.166 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.045 4.045 24 C -0.246 4.246 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.467 -0.586 1.660 4.801 hybrid contribution -1.115 -0.245 -0.946 1.483 sum -5.582 -0.831 0.714 5.688 Atomic orbital electron populations 1.22933 0.79389 1.02938 1.01232 1.85943 1.20638 1.27953 1.89323 1.19057 0.92262 0.83509 0.97875 1.20063 0.90887 0.98013 1.09658 1.20727 0.99362 0.90358 0.94650 1.19484 0.93291 0.93548 1.01777 1.18234 0.83367 0.84691 0.79343 1.90602 1.30970 1.83455 1.44396 1.43197 1.25003 1.10389 1.37061 1.18995 0.93642 1.13382 1.22065 0.90072 1.25497 0.97047 0.96631 0.94864 1.69820 1.26850 1.21855 1.29123 0.86462 0.83434 0.79501 0.78995 1.19045 1.20840 1.19721 1.21571 0.94763 0.84964 0.95606 1.22668 1.01290 0.94794 0.97894 1.22434 1.00144 0.97129 0.96182 1.22265 1.00388 0.96438 0.96327 1.22344 0.98138 0.97677 0.97998 1.21214 0.94179 0.96782 0.92332 1.21008 0.99051 0.92624 1.11913 0.93048 0.88988 0.92936 0.86228 0.86015 0.91925 0.90488 0.90700 0.92799 0.92355 0.92507 0.93100 0.91733 0.93528 0.89010 0.84504 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.62 10.48 -18.86 -0.20 -5.82 16 3 C 0.12 2.28 6.70 -39.01 -0.26 2.02 16 4 C -0.17 -3.33 9.97 -39.50 -0.39 -3.73 16 5 C -0.03 -0.70 9.65 -39.20 -0.38 -1.08 16 6 C -0.08 -1.83 3.57 -104.96 -0.37 -2.21 16 7 C 0.55 14.17 6.80 -12.49 -0.08 14.08 16 8 O -0.61 -16.80 16.33 5.25 0.09 -16.71 16 9 N -0.44 -10.51 2.35 -107.73 -0.25 -10.76 16 10 C -0.35 -8.32 5.17 -15.00 -0.08 -8.40 16 11 H 0.08 1.89 6.94 -52.49 -0.36 1.52 16 12 C 0.07 1.66 3.16 -17.45 -0.06 1.60 16 13 N -0.84 -21.45 11.88 55.50 0.66 -20.79 16 14 Si 0.89 18.94 28.23 -169.99 -4.80 14.14 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.14 2.91 3.28 -66.81 -0.22 2.69 16 19 C -0.13 -2.34 6.43 -25.03 -0.16 -2.50 16 20 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 21 C -0.12 -1.93 6.83 -25.07 -0.17 -2.11 16 22 C -0.12 -2.47 6.25 -25.61 -0.16 -2.63 16 23 C -0.03 -0.57 6.15 -39.20 -0.24 -0.81 16 24 C -0.23 -4.41 8.73 -39.50 -0.34 -4.76 16 25 H 0.05 0.67 7.65 -51.93 -0.40 0.28 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 28 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.12 2.66 8.06 -52.48 -0.42 2.24 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 31 H 0.08 1.78 6.96 -51.93 -0.36 1.42 16 32 H 0.07 1.43 6.65 -51.93 -0.35 1.08 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 2.14 7.19 -51.93 -0.37 1.76 16 40 H 0.14 2.90 6.47 -52.49 -0.34 2.56 16 41 H 0.12 1.95 6.27 -52.49 -0.33 1.62 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -28.16 327.21 -7.52 -35.69 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.85 Total: 7.79 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.10 Total: -8.47 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.41 Total: -31.55 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.11 Total: -22.53 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.80 Total: 14.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.16 -7.52 -35.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057545620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.003 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds