Wall clock time and date at job start Tue Mar 31 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 117.00255 * 2 1 4 4 C 1.39007 * 119.90622 * 179.97438 * 3 2 1 5 5 C 1.37685 * 120.09264 * 180.02562 * 4 3 2 6 6 C 1.39802 * 119.90727 * 0.02562 * 5 4 3 7 7 C 1.47491 * 120.09348 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00087 * 316.46356 * 7 6 5 9 9 N 1.34779 * 120.00096 * 136.74957 * 7 6 5 10 10 C 1.36898 * 120.00008 * 3.36554 * 9 7 6 11 11 H 1.07995 * 120.00054 * 124.43394 * 10 9 7 12 12 C 1.39028 * 120.00155 * 304.44134 * 10 9 7 13 13 N 1.31377 * 119.99856 * 346.20463 * 12 10 9 14 14 Si 1.86799 * 120.00005 * 166.21084 * 12 10 9 15 15 H 1.48504 * 109.47005 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47028 * 119.99693 * 14 12 10 17 17 H 1.48496 * 109.46910 * 239.99778 * 14 12 10 18 18 C 1.46500 * 119.99561 * 183.37386 * 9 7 6 19 19 C 1.54267 * 110.02894 * 242.06523 * 18 9 7 20 20 C 1.54968 * 104.16082 * 217.13940 * 19 18 9 21 21 C 1.54888 * 102.77808 * 37.89132 * 20 19 18 22 22 C 1.53873 * 110.02861 * 124.85627 * 18 9 7 23 23 C 1.39798 * 119.80861 * 0.26921 * 6 5 4 24 24 C 1.37690 * 119.90678 * 359.47262 * 23 6 5 25 25 H 1.09000 * 109.47411 * 59.99412 * 1 2 3 26 26 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46990 * 299.99320 * 1 2 3 28 28 H 1.08000 * 119.95414 * 359.97438 * 4 3 2 29 29 H 1.08008 * 120.04518 * 179.97438 * 5 4 3 30 30 H 0.96996 * 120.00058 * 185.07324 * 13 12 10 31 31 H 1.08994 * 110.02164 * 3.45906 * 18 9 7 32 32 H 1.09005 * 110.49002 * 335.78868 * 19 18 9 33 33 H 1.09002 * 110.48354 * 98.43222 * 19 18 9 34 34 H 1.08992 * 110.71992 * 279.57398 * 20 19 18 35 35 H 1.09005 * 110.91933 * 156.29684 * 20 19 18 36 36 H 1.08998 * 110.48878 * 203.40405 * 21 20 19 37 37 H 1.09004 * 110.59702 * 80.81276 * 21 20 19 38 38 H 1.09004 * 110.03271 * 238.56274 * 22 18 9 39 39 H 1.08999 * 110.04054 * 359.94289 * 22 18 9 40 40 H 1.07999 * 120.04421 * 179.72800 * 23 6 5 41 41 H 1.07989 * 119.95382 * 180.23244 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4335 1.2796 0.0005 5 6 4.0626 2.5044 0.0011 6 6 3.3031 3.6781 0.0016 7 6 3.9728 4.9922 0.0016 8 8 4.9295 5.1872 0.7268 9 7 3.5210 5.9788 -0.7978 10 6 2.3995 5.7841 -1.5583 11 1 1.5652 6.4646 -1.4742 12 6 2.3345 4.7102 -2.4388 13 7 3.4255 4.0459 -2.7462 14 14 0.6961 4.2119 -3.1849 15 1 -0.3716 5.1127 -2.6811 16 1 0.7741 4.3150 -4.6643 17 1 0.3833 2.8117 -2.8020 18 6 4.2302 7.2595 -0.8528 19 6 3.3075 8.3958 -0.3657 20 6 3.6659 9.5939 -1.2810 21 6 3.9001 8.9176 -2.6546 22 6 4.6072 7.5911 -2.3074 23 6 1.9072 3.6026 0.0073 24 6 1.2861 2.3738 0.0014 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 4.0194 0.3724 0.0014 29 1 5.1413 2.5582 0.0019 30 1 3.3939 3.3446 -3.4156 31 1 5.1272 7.2162 -0.2352 32 1 2.2610 8.1185 -0.4927 33 1 3.5157 8.6357 0.6770 34 1 4.5736 10.0868 -0.9333 35 1 2.8397 10.3029 -1.3354 36 1 4.5403 9.5384 -3.2813 37 1 2.9506 8.7244 -3.1538 38 1 5.6872 7.7095 -2.3955 39 1 4.2633 6.7987 -2.9722 40 1 1.3168 4.5069 0.0122 41 1 0.2078 2.3146 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057545620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:56 Heat of formation + Delta-G solvation = -60.856910 kcal Electronic energy + Delta-G solvation = -24096.000695 eV Core-core repulsion = 20747.517259 eV Total energy + Delta-G solvation = -3348.483436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32278 -40.43470 -38.59704 -37.56465 -35.90420 -33.20410 -31.97543 -31.08879 -29.43319 -28.76640 -27.91351 -26.68252 -23.98528 -23.31638 -21.61521 -21.34613 -20.93586 -19.16315 -18.61480 -17.55767 -17.26433 -16.85955 -16.61192 -16.26530 -16.03302 -15.66049 -15.33765 -15.03671 -14.54009 -14.44226 -14.14408 -14.04525 -13.60981 -13.54728 -13.19329 -13.01243 -12.76904 -12.71597 -12.48648 -12.24909 -12.05769 -11.83401 -11.81590 -11.79800 -11.64375 -11.33681 -11.30711 -10.79630 -10.41254 -9.79241 -9.22780 -8.78467 -8.21774 -6.09171 0.39253 0.57789 1.41515 1.45680 1.54527 2.14217 2.35191 2.41215 2.88972 3.09321 3.29910 3.88245 3.95104 3.99462 4.01676 4.17840 4.36977 4.39070 4.39501 4.59036 4.60926 4.65484 4.70322 4.71963 4.80242 4.82210 4.83785 4.93540 5.11911 5.19219 5.20834 5.26487 5.36839 5.44584 5.50408 5.54231 5.59369 5.63970 5.82370 5.86344 6.17233 6.51801 6.71973 7.09279 7.66347 8.12311 8.83047 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.006293 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.863576 B = 4448.308412 C = 5137.872392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.125 3.875 4 C -0.170 4.170 5 C -0.046 4.046 6 C -0.105 4.105 7 C 0.533 3.467 8 O -0.646 6.646 9 N -0.438 5.438 10 C -0.354 4.354 11 H 0.087 0.913 12 C 0.045 3.955 13 N -0.872 5.872 14 Si 0.937 3.063 15 H -0.250 1.250 16 H -0.289 1.289 17 H -0.269 1.269 18 C 0.121 3.879 19 C -0.122 4.122 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.030 4.030 24 C -0.224 4.224 25 H 0.051 0.949 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.109 0.891 30 H 0.266 0.734 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.136 0.864 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 -0.203 0.961 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.079 3.921 4 C -0.188 4.188 5 C -0.066 4.066 6 C -0.108 4.108 7 C 0.325 3.675 8 O -0.536 6.536 9 N -0.155 5.155 10 C -0.482 4.482 11 H 0.105 0.895 12 C -0.163 4.163 13 N -0.506 5.506 14 Si 0.761 3.239 15 H -0.173 1.173 16 H -0.215 1.215 17 H -0.194 1.194 18 C 0.018 3.982 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.157 4.157 23 C -0.049 4.049 24 C -0.242 4.242 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.153 0.847 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.981 -0.448 1.212 7.099 hybrid contribution -0.354 -0.363 -0.798 0.946 sum -7.335 -0.811 0.414 7.391 Atomic orbital electron populations 1.23335 0.76758 1.05585 1.01940 1.85951 1.23269 1.26511 1.88732 1.19122 0.92186 0.84474 0.96308 1.20243 0.91827 0.97795 1.08941 1.20723 0.98928 0.91170 0.95758 1.19472 0.94407 0.92781 1.04136 1.18778 0.83444 0.86005 0.79316 1.90544 1.32776 1.84283 1.46040 1.43395 1.25026 1.10850 1.36232 1.19141 0.93653 1.13619 1.21740 0.89514 1.26008 0.99198 0.96161 0.94922 1.69950 1.28739 1.22248 1.29625 0.85732 0.80830 0.79519 0.77796 1.17278 1.21525 1.19411 1.21819 0.94697 0.85310 0.96412 1.22600 0.99798 0.94750 0.98890 1.22407 1.01925 0.96137 0.94132 1.22218 1.00178 0.94642 0.97539 1.22253 0.98651 0.98745 0.96095 1.21186 0.93221 0.97734 0.92772 1.21276 1.00604 0.91684 1.10662 0.93008 0.85593 0.91424 0.84152 0.87303 0.92425 0.93044 0.91468 0.92356 0.90778 0.89757 0.90488 0.92100 0.93322 0.92557 0.84668 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.33 -10.46 10.48 -90.39 -0.95 -11.41 16 3 C 0.12 4.62 6.70 22.64 0.15 4.77 16 4 C -0.17 -6.68 9.97 22.32 0.22 -6.46 16 5 C -0.05 -2.12 9.65 22.52 0.22 -1.90 16 6 C -0.11 -5.09 3.57 -20.08 -0.07 -5.16 16 7 C 0.53 28.62 6.80 86.68 0.59 29.20 16 8 O -0.65 -37.93 16.33 -4.11 -0.07 -37.99 16 9 N -0.44 -21.72 2.35 -612.99 -1.44 -23.16 16 10 C -0.35 -16.83 5.17 84.09 0.43 -16.39 16 11 H 0.09 3.99 6.94 -2.91 -0.02 3.97 16 12 C 0.04 2.12 3.16 84.95 0.27 2.39 16 13 N -0.87 -45.31 11.88 21.68 0.26 -45.06 16 14 Si 0.94 37.76 28.23 68.60 1.94 39.69 16 15 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 16 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 18 C 0.12 5.38 3.28 45.72 0.15 5.53 16 19 C -0.12 -4.38 6.43 31.70 0.20 -4.18 16 20 C -0.11 -3.05 6.91 31.91 0.22 -2.83 16 21 C -0.11 -3.38 6.83 31.67 0.22 -3.17 16 22 C -0.12 -4.84 6.25 31.32 0.20 -4.65 16 23 C -0.03 -1.30 6.15 22.52 0.14 -1.16 16 24 C -0.22 -8.26 8.73 22.33 0.20 -8.06 16 25 H 0.05 1.15 7.65 -2.39 -0.02 1.13 16 26 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 1.30 7.65 -2.39 -0.02 1.28 16 28 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 29 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 30 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 31 H 0.05 2.51 6.96 -2.39 -0.02 2.49 16 32 H 0.07 2.51 6.65 -2.38 -0.02 2.49 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 39 H 0.06 2.69 7.19 -2.39 -0.02 2.68 16 40 H 0.14 5.70 6.47 -2.91 -0.02 5.68 16 41 H 0.15 4.41 6.27 -2.92 -0.02 4.39 16 Total: -1.00 -63.04 327.21 5.01 -58.04 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 1.02 Total: 30.44 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.24 Total: -10.55 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -1.18 Total: -68.22 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.01 Total: -49.40 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.94 Total: 39.69 kcal Total: -63.04 5.01 -58.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057545620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.821 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds