Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.47273 * 2 1 4 4 C 1.35738 * 116.99953 * 180.02562 * 3 2 1 5 5 C 1.39020 * 119.88236 * 180.02562 * 4 3 2 6 6 C 1.37664 * 120.11130 * 179.71916 * 5 4 3 7 7 C 1.39967 * 119.88523 * 0.26204 * 6 5 4 8 8 C 1.47007 * 120.11529 * 179.97438 * 7 6 5 9 9 C 1.34970 * 120.00373 * 179.97438 * 8 7 6 10 10 C 1.46258 * 120.00165 * 180.02562 * 9 8 7 11 11 O 1.21718 * 120.00028 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00031 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00037 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47560 * 325.00290 * 13 12 10 15 15 C 1.53007 * 109.47139 * 85.00301 * 13 12 10 16 16 C 1.50706 * 109.47296 * 205.00054 * 13 12 10 17 17 H 1.07994 * 119.99807 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99820 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00149 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99959 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46744 * 60.00036 * 20 18 16 22 22 H 1.48496 * 109.47227 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47173 * 300.00482 * 20 18 16 24 24 C 1.39976 * 119.77658 * 359.97438 * 7 6 5 25 25 C 1.37658 * 119.88062 * 0.02562 * 24 7 6 26 26 H 1.08993 * 109.46762 * 299.99734 * 1 2 3 27 27 H 1.08999 * 109.46869 * 59.99937 * 1 2 3 28 28 H 1.08996 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46850 * 240.00162 * 2 1 3 30 30 H 1.08997 * 109.47259 * 120.00721 * 2 1 3 31 31 H 1.08002 * 119.94780 * 0.02562 * 5 4 3 32 32 H 1.07999 * 120.05725 * 180.27584 * 6 5 4 33 33 H 1.08002 * 119.99826 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.99801 * 359.97438 * 9 8 7 35 35 H 0.97008 * 119.99825 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.46304 * 300.00249 * 15 13 12 37 37 H 1.08997 * 109.46904 * 59.99587 * 15 13 12 38 38 H 1.08997 * 109.47142 * 180.02562 * 15 13 12 39 39 H 0.97001 * 119.99593 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.06107 * 179.97438 * 24 7 6 41 41 H 1.08006 * 119.94182 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3521 1.5251 -0.0005 5 6 3.8809 2.8108 0.0000 6 6 5.2449 2.9966 0.0053 7 6 6.0997 1.8883 0.0046 8 6 7.5571 2.0808 0.0096 9 6 8.3793 1.0104 0.0095 10 6 9.8293 1.2020 0.0151 11 8 10.2945 2.3268 0.0194 12 7 10.6503 0.1332 0.0145 13 6 12.1026 0.3251 0.0195 14 1 12.3544 1.2090 -0.5665 15 6 12.5873 0.5122 1.4586 16 6 12.7712 -0.8839 -0.5825 17 1 12.1740 -1.7122 -0.9341 18 6 14.1453 -0.9325 -0.6844 19 7 14.8726 0.0759 -0.2558 20 14 14.9742 -2.4314 -1.4300 21 1 14.5042 -2.6133 -2.8269 22 1 16.4464 -2.2373 -1.4238 23 1 14.6308 -3.6354 -0.6315 24 6 5.5622 0.5958 -0.0009 25 6 4.1968 0.4209 -0.0062 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.2205 3.6654 0.0012 32 1 5.6547 3.9958 0.0101 33 1 7.9699 3.0788 0.0135 34 1 7.9665 0.0124 0.0061 35 1 10.2795 -0.7632 0.0106 36 1 12.1036 1.3866 1.8940 37 1 12.3355 -0.3717 2.0446 38 1 13.6678 0.6554 1.4624 39 1 15.8394 0.0415 -0.3271 40 1 6.2175 -0.2627 -0.0019 41 1 3.7810 -0.5759 -0.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -45.420098 kcal Electronic energy + Delta-G solvation = -21250.885603 eV Core-core repulsion = 17903.071557 eV Total energy + Delta-G solvation = -3347.814045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40204 -38.88278 -37.90920 -34.85638 -33.58409 -32.33800 -31.94117 -31.26263 -29.41945 -28.18137 -25.24257 -24.43810 -24.00523 -22.28361 -21.38490 -19.93060 -19.08080 -18.62403 -17.32530 -16.47430 -16.25897 -15.85485 -15.25958 -15.09378 -14.74646 -14.26526 -13.97307 -13.82773 -13.73936 -13.56144 -13.04447 -12.96823 -12.50514 -12.40765 -12.23750 -12.04603 -11.72592 -11.55524 -11.26640 -11.07796 -10.94941 -10.89512 -10.71991 -10.31700 -10.21404 -9.78067 -9.26430 -9.08530 -9.02607 -8.53096 -8.00511 -7.74654 -6.10392 -4.19725 0.63450 1.15231 2.13806 2.84876 3.26588 3.31704 3.32980 3.61933 4.09661 4.14704 4.39929 4.43633 4.49305 4.58854 4.66501 4.81238 4.92188 5.01535 5.09545 5.21306 5.22181 5.28770 5.34601 5.45048 5.59414 5.73352 5.80864 5.96556 6.10727 6.13540 6.49519 6.55902 6.68874 6.86535 7.00071 7.11816 7.17993 7.49387 7.59809 7.72623 7.94574 8.17351 8.70575 8.80542 9.17015 9.47802 10.95564 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.002404 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.319452 B =11645.109688 C =12345.152315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.316 6.316 4 C 0.131 3.869 5 C -0.154 4.154 6 C -0.060 4.060 7 C -0.099 4.099 8 C -0.043 4.043 9 C -0.194 4.194 10 C 0.529 3.471 11 O -0.560 6.560 12 N -0.703 5.703 13 C 0.263 3.737 14 H 0.049 0.951 15 C -0.147 4.147 16 C -0.534 4.534 17 H 0.060 0.940 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.065 4.065 25 C -0.210 4.210 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.389 0.611 36 H 0.015 0.985 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.265 0.735 40 H 0.132 0.868 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.028 -0.646 1.182 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.230 6.230 4 C 0.086 3.914 5 C -0.173 4.173 6 C -0.078 4.078 7 C -0.099 4.099 8 C -0.063 4.063 9 C -0.214 4.214 10 C 0.316 3.684 11 O -0.442 6.442 12 N -0.349 5.349 13 C 0.161 3.839 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.083 4.083 25 C -0.228 4.228 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.221 0.779 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.150 0.850 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.598 0.323 1.203 25.628 hybrid contribution 0.403 -1.628 -0.371 1.717 sum -25.195 -1.305 0.832 25.243 Atomic orbital electron populations 1.21778 0.92694 1.02922 1.03539 1.22810 0.95904 0.81921 1.01587 1.86024 1.19200 1.29434 1.88380 1.19179 0.82151 0.94207 0.95856 1.20348 0.95169 0.94730 1.07017 1.21205 0.91907 0.98773 0.95936 1.19029 0.93131 0.93110 1.04648 1.22204 0.90280 0.99952 0.93862 1.23194 0.93990 0.99345 1.04915 1.18242 0.86645 0.85550 0.77932 1.90763 1.77924 1.23788 1.51731 1.46456 1.09465 1.07474 1.71503 1.18752 0.73151 0.97988 0.93998 0.93311 1.22075 1.04112 0.96995 0.97345 1.21185 0.91859 1.02842 1.41359 0.92137 1.24898 0.97164 0.96518 0.95201 1.69896 1.06010 1.30450 1.45722 0.86496 0.78266 0.82589 0.79657 1.20185 1.21135 1.20184 1.21260 0.94309 0.96931 0.95795 1.21161 0.94211 0.98036 1.09429 0.91499 0.91501 0.90314 0.91891 0.91896 0.85015 0.84668 0.84742 0.86037 0.77873 0.96610 0.95491 0.89137 0.92526 0.85040 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.05 0.35 5.45 37.16 0.20 0.55 16 3 O -0.32 -3.08 10.13 -18.92 -0.19 -3.27 16 4 C 0.13 1.38 6.70 -39.00 -0.26 1.11 16 5 C -0.15 -1.57 9.97 -39.50 -0.39 -1.96 16 6 C -0.06 -0.64 9.79 -39.14 -0.38 -1.02 16 7 C -0.10 -1.19 5.87 -105.05 -0.62 -1.81 16 8 C -0.04 -0.61 9.45 -37.19 -0.35 -0.96 16 9 C -0.19 -2.99 9.41 -37.52 -0.35 -3.34 16 10 C 0.53 10.99 7.70 -13.04 -0.10 10.89 16 11 O -0.56 -13.86 15.89 5.17 0.08 -13.77 16 12 N -0.70 -15.07 5.06 -56.38 -0.29 -15.36 16 13 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 15 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 16 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.88 -25.14 11.32 55.43 0.63 -24.51 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.06 -0.71 9.40 -39.14 -0.37 -1.07 16 25 C -0.21 -2.07 9.01 -39.50 -0.36 -2.42 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.37 7.64 -51.93 -0.40 -0.03 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 2.00 7.52 -52.49 -0.39 1.60 16 34 H 0.12 1.50 6.07 -52.49 -0.32 1.18 16 35 H 0.39 7.13 8.52 -40.82 -0.35 6.78 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.13 1.25 6.16 -52.49 -0.32 0.92 16 41 H 0.13 0.98 6.27 -52.48 -0.33 0.65 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -32.26 348.49 -8.08 -40.34 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.72 Total: 5.63 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.83 Total: -10.06 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.34 Total: -39.87 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.11 Total: -17.05 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.26 -8.08 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.078 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds