Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.47273 * 2 1 4 4 C 1.35738 * 116.99953 * 180.02562 * 3 2 1 5 5 C 1.39020 * 119.88236 * 180.02562 * 4 3 2 6 6 C 1.37664 * 120.11130 * 179.71916 * 5 4 3 7 7 C 1.39967 * 119.88523 * 0.26204 * 6 5 4 8 8 C 1.47007 * 120.11529 * 179.97438 * 7 6 5 9 9 C 1.34970 * 120.00373 * 179.97438 * 8 7 6 10 10 C 1.46258 * 120.00165 * 180.02562 * 9 8 7 11 11 O 1.21718 * 120.00028 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00031 * 180.02562 * 10 9 8 13 13 C 1.46491 * 120.00037 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47560 * 325.00290 * 13 12 10 15 15 C 1.53007 * 109.47139 * 85.00301 * 13 12 10 16 16 C 1.50706 * 109.47296 * 205.00054 * 13 12 10 17 17 H 1.07994 * 119.99807 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99820 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00149 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99959 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46744 * 60.00036 * 20 18 16 22 22 H 1.48496 * 109.47227 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47173 * 300.00482 * 20 18 16 24 24 C 1.39976 * 119.77658 * 359.97438 * 7 6 5 25 25 C 1.37658 * 119.88062 * 0.02562 * 24 7 6 26 26 H 1.08993 * 109.46762 * 299.99734 * 1 2 3 27 27 H 1.08999 * 109.46869 * 59.99937 * 1 2 3 28 28 H 1.08996 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46850 * 240.00162 * 2 1 3 30 30 H 1.08997 * 109.47259 * 120.00721 * 2 1 3 31 31 H 1.08002 * 119.94780 * 0.02562 * 5 4 3 32 32 H 1.07999 * 120.05725 * 180.27584 * 6 5 4 33 33 H 1.08002 * 119.99826 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.99801 * 359.97438 * 9 8 7 35 35 H 0.97008 * 119.99825 * 359.97438 * 12 10 9 36 36 H 1.09004 * 109.46304 * 300.00249 * 15 13 12 37 37 H 1.08997 * 109.46904 * 59.99587 * 15 13 12 38 38 H 1.08997 * 109.47142 * 180.02562 * 15 13 12 39 39 H 0.97001 * 119.99593 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.06107 * 179.97438 * 24 7 6 41 41 H 1.08006 * 119.94182 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3521 1.5251 -0.0005 5 6 3.8809 2.8108 0.0000 6 6 5.2449 2.9966 0.0053 7 6 6.0997 1.8883 0.0046 8 6 7.5571 2.0808 0.0096 9 6 8.3793 1.0104 0.0095 10 6 9.8293 1.2020 0.0151 11 8 10.2945 2.3268 0.0194 12 7 10.6503 0.1332 0.0145 13 6 12.1026 0.3251 0.0195 14 1 12.3544 1.2090 -0.5665 15 6 12.5873 0.5122 1.4586 16 6 12.7712 -0.8839 -0.5825 17 1 12.1740 -1.7122 -0.9341 18 6 14.1453 -0.9325 -0.6844 19 7 14.8726 0.0759 -0.2558 20 14 14.9742 -2.4314 -1.4300 21 1 14.5042 -2.6133 -2.8269 22 1 16.4464 -2.2373 -1.4238 23 1 14.6308 -3.6354 -0.6315 24 6 5.5622 0.5958 -0.0009 25 6 4.1968 0.4209 -0.0062 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.2205 3.6654 0.0012 32 1 5.6547 3.9958 0.0101 33 1 7.9699 3.0788 0.0135 34 1 7.9665 0.0124 0.0061 35 1 10.2795 -0.7632 0.0106 36 1 12.1036 1.3866 1.8940 37 1 12.3355 -0.3717 2.0446 38 1 13.6678 0.6554 1.4624 39 1 15.8394 0.0415 -0.3271 40 1 6.2175 -0.2627 -0.0019 41 1 3.7810 -0.5759 -0.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -65.225393 kcal Electronic energy + Delta-G solvation = -21251.744425 eV Core-core repulsion = 17903.071557 eV Total energy + Delta-G solvation = -3348.672867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16560 -40.50362 -38.76161 -36.75595 -34.66292 -34.28528 -32.57221 -32.02551 -31.09668 -29.39206 -27.34501 -25.32131 -24.90176 -23.40685 -22.44869 -21.52964 -20.55716 -19.35181 -18.83757 -17.82678 -17.21842 -17.05207 -16.68847 -16.29430 -15.97166 -15.68658 -15.53403 -14.93061 -14.52538 -14.41527 -14.36580 -14.16682 -13.70538 -13.55456 -13.21351 -13.14703 -12.98614 -12.87268 -12.74512 -12.66288 -12.51217 -12.27145 -12.15084 -11.83260 -11.64016 -11.12313 -10.82251 -10.79985 -10.58019 -10.04510 -9.75937 -8.78501 -8.16997 -6.34965 -0.37619 0.37910 1.05618 1.45289 1.47903 1.55729 2.22428 2.36421 2.43991 2.69852 2.90673 3.13110 3.70749 3.79513 3.88819 4.07292 4.09609 4.25685 4.27179 4.30417 4.40059 4.43292 4.60445 4.75133 4.89029 4.92079 4.95634 5.01351 5.07934 5.09030 5.18583 5.21561 5.33186 5.40133 5.50217 5.61020 5.68950 5.70445 5.73081 5.93216 6.09730 6.41421 6.72496 6.99314 7.32466 7.57089 8.89281 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.002404 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.319452 B =11645.109688 C =12345.152315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.329 6.329 4 C 0.132 3.868 5 C -0.165 4.165 6 C -0.058 4.058 7 C -0.125 4.125 8 C -0.014 4.014 9 C -0.214 4.214 10 C 0.526 3.474 11 O -0.612 6.612 12 N -0.700 5.700 13 C 0.268 3.732 14 H -0.003 1.003 15 C -0.133 4.133 16 C -0.548 4.548 17 H 0.074 0.926 18 C 0.012 3.988 19 N -0.918 5.918 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.062 4.062 25 C -0.213 4.213 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.406 0.594 36 H 0.011 0.989 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.266 0.734 40 H 0.147 0.853 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.457 -2.870 0.939 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.243 6.243 4 C 0.086 3.914 5 C -0.183 4.183 6 C -0.076 4.076 7 C -0.125 4.125 8 C -0.034 4.034 9 C -0.235 4.235 10 C 0.316 3.684 11 O -0.497 6.497 12 N -0.347 5.347 13 C 0.165 3.835 14 H 0.015 0.985 15 C -0.192 4.192 16 C -0.586 4.586 17 H 0.093 0.907 18 C -0.188 4.188 19 N -0.556 5.556 20 Si 0.800 3.200 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.080 4.080 25 C -0.231 4.231 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.138 0.862 34 H 0.175 0.825 35 H 0.242 0.758 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.164 0.836 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.078 -1.935 0.964 28.161 hybrid contribution 0.935 -0.836 -0.291 1.288 sum -27.143 -2.771 0.673 27.292 Atomic orbital electron populations 1.21811 0.91538 1.04175 1.03202 1.23115 0.96903 0.80643 1.02525 1.86030 1.18719 1.31516 1.87992 1.19420 0.82756 0.94534 0.94682 1.20562 0.95172 0.95495 1.07075 1.21397 0.92124 0.99157 0.94879 1.18964 0.91693 0.94399 1.07473 1.22287 0.91642 0.99001 0.90445 1.22926 0.90323 1.01526 1.08680 1.19041 0.88762 0.84377 0.76215 1.90730 1.79274 1.25642 1.54020 1.46187 1.07765 1.08824 1.71935 1.18363 0.75948 0.95941 0.93293 0.98525 1.21898 1.02497 0.97377 0.97437 1.21517 0.92432 1.03183 1.41461 0.90744 1.25856 0.97911 0.99560 0.95509 1.70056 1.06242 1.32560 1.46755 0.85345 0.76807 0.78918 0.78933 1.19557 1.21188 1.18747 1.21475 0.95053 0.96792 0.94685 1.21406 0.93735 0.99099 1.08871 0.91831 0.91853 0.88270 0.90919 0.90897 0.83636 0.83420 0.86151 0.82483 0.75830 0.97035 0.93989 0.91396 0.92526 0.83566 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 71.98 0.74 -0.36 16 2 C 0.04 0.44 5.45 71.98 0.39 0.84 16 3 O -0.33 -5.64 10.13 -90.62 -0.92 -6.56 16 4 C 0.13 2.45 6.70 22.64 0.15 2.60 16 5 C -0.16 -3.04 9.97 22.32 0.22 -2.81 16 6 C -0.06 -1.13 9.79 22.55 0.22 -0.91 16 7 C -0.12 -2.80 5.87 -20.14 -0.12 -2.92 16 8 C -0.01 -0.38 9.45 23.82 0.23 -0.15 16 9 C -0.21 -6.44 9.41 23.60 0.22 -6.22 16 10 C 0.53 22.26 7.70 86.33 0.66 22.93 16 11 O -0.61 -31.66 15.89 -4.41 -0.07 -31.73 16 12 N -0.70 -30.30 5.06 -450.48 -2.28 -32.58 16 13 C 0.27 14.39 2.56 44.25 0.11 14.51 16 14 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 15 C -0.13 -6.98 9.26 71.98 0.67 -6.31 16 16 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 17 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 18 C 0.01 0.63 5.30 84.65 0.45 1.08 16 19 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 20 Si 0.98 42.29 29.54 68.60 2.03 44.32 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 C -0.06 -1.18 9.40 22.55 0.21 -0.97 16 25 C -0.21 -3.57 9.01 22.32 0.20 -3.36 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.63 7.64 -2.38 -0.02 0.61 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 33 H 0.12 3.65 7.52 -2.91 -0.02 3.62 16 34 H 0.16 3.49 6.07 -2.91 -0.02 3.47 16 35 H 0.41 14.53 8.52 -92.70 -0.79 13.74 16 36 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 39 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.15 2.28 6.16 -2.91 -0.02 2.26 16 41 H 0.15 1.75 6.27 -2.91 -0.02 1.74 16 Total: -1.00 -71.77 348.49 3.84 -67.94 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.25 Total: 23.20 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.59 Total: -11.36 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.04 Total: -85.81 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.99 Total: -38.29 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.77 3.84 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.711 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds