Wall clock time and date at job start Tue Mar 31 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47222 * 2 1 4 4 C 1.36748 * 119.99985 * 264.20666 * 3 2 1 5 5 H 1.08004 * 120.00197 * 142.45065 * 4 3 2 6 6 C 1.39096 * 119.99869 * 322.45923 * 4 3 2 7 7 N 1.31339 * 120.00141 * 337.83771 * 6 4 3 8 8 Si 1.86806 * 119.99852 * 157.84074 * 6 4 3 9 9 H 1.48501 * 109.47240 * 59.99481 * 8 6 4 10 10 H 1.48494 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46786 * 299.99551 * 8 6 4 12 12 C 1.34771 * 120.00384 * 84.21205 * 3 2 1 13 13 O 1.21777 * 120.00370 * 179.97438 * 12 3 2 14 14 C 1.41794 * 119.99866 * 359.97438 * 12 3 2 15 15 C 1.35157 * 119.99969 * 180.02562 * 14 12 3 16 16 C 1.46890 * 119.99733 * 180.02562 * 15 14 12 17 17 C 1.39960 * 120.21851 * 359.97438 * 16 15 14 18 18 C 1.37744 * 119.87734 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.83797 * 179.97438 * 18 17 16 20 20 C 1.38568 * 120.32567 * 0.02562 * 18 17 16 21 21 C 1.38146 * 120.43928 * 359.97438 * 20 18 17 22 22 C 1.38587 * 120.11274 * 359.74373 * 21 20 18 23 23 O 1.35699 * 120.16432 * 180.25097 * 22 21 20 24 24 C 1.42904 * 116.99522 * 0.25732 * 23 22 21 25 25 H 1.09000 * 109.47360 * 300.00250 * 1 2 3 26 26 H 1.09006 * 109.47381 * 59.99948 * 1 2 3 27 27 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47360 * 239.99750 * 2 1 3 29 29 H 1.09003 * 109.46924 * 119.99835 * 2 1 3 30 30 H 0.97001 * 119.99770 * 180.02562 * 7 6 4 31 31 H 1.07998 * 119.99778 * 0.02562 * 14 12 3 32 32 H 1.08001 * 119.99863 * 0.27479 * 15 14 12 33 33 H 1.08003 * 120.05980 * 0.02562 * 17 16 15 34 34 H 1.09000 * 109.46848 * 89.99740 * 19 18 17 35 35 H 1.08990 * 109.47179 * 209.99999 * 19 18 17 36 36 H 1.09003 * 109.47276 * 329.99972 * 19 18 17 37 37 H 1.08000 * 119.78272 * 179.97438 * 20 18 17 38 38 H 1.08005 * 119.94174 * 180.02562 * 21 20 18 39 39 H 1.09006 * 109.46767 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47506 * 299.99969 * 24 23 22 41 41 H 1.09003 * 109.46965 * 60.00416 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3589 1.9860 -1.1782 5 1 2.1376 3.0318 -1.3322 6 6 2.9904 1.2542 -2.1785 7 7 3.6437 0.1558 -1.8757 8 14 2.9091 1.8336 -3.9525 9 1 3.5148 3.1852 -4.0600 10 1 3.6561 0.8856 -4.8176 11 1 1.4912 1.8904 -4.3903 12 6 2.1320 2.0558 1.1612 13 8 2.5384 3.2038 1.1612 14 6 1.7784 1.4289 2.3828 15 6 1.8919 2.1056 3.5473 16 6 1.5261 1.4560 4.8129 17 6 1.0591 0.1366 4.8182 18 6 0.7186 -0.4660 6.0092 19 6 0.2152 -1.8864 6.0138 20 6 0.8356 0.2279 7.2029 21 6 1.2951 1.5307 7.2130 22 6 1.6483 2.1526 6.0260 23 8 2.1046 3.4305 6.0353 24 6 2.2016 4.0755 7.3069 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0843 -0.3543 -2.5732 31 1 1.4184 0.4107 2.3829 32 1 2.2477 3.1253 3.5468 33 1 0.9666 -0.4083 3.8903 34 1 1.0578 -2.5701 6.1178 35 1 -0.4712 -2.0259 6.8488 36 1 -0.3050 -2.0906 5.0779 37 1 0.5657 -0.2529 8.1315 38 1 1.3835 2.0638 8.1482 39 1 2.5790 5.0892 7.1722 40 1 1.2163 4.1129 7.7714 41 1 2.8840 3.5161 7.9468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:56 Heat of formation + Delta-G solvation = -26.475590 kcal Electronic energy + Delta-G solvation = -22556.395081 eV Core-core repulsion = 19209.402531 eV Total energy + Delta-G solvation = -3346.992550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19317 -38.65641 -37.65679 -35.08422 -33.75739 -32.10226 -31.74859 -29.57340 -29.38103 -27.86567 -26.04727 -25.45742 -23.61966 -22.31261 -21.42340 -20.26126 -18.12808 -17.93634 -16.87294 -16.43533 -15.90221 -15.75892 -14.94968 -14.81602 -14.42064 -14.14463 -13.78666 -13.72076 -13.63171 -13.24432 -12.87067 -12.78063 -12.40558 -12.25309 -11.99137 -11.87534 -11.73071 -11.64341 -11.13639 -11.02024 -10.93410 -10.81921 -10.70169 -10.44661 -10.35438 -10.06115 -9.83428 -8.92110 -8.42976 -8.34453 -7.61074 -7.39014 -6.35525 -3.90730 0.89095 1.42686 2.47493 3.22718 3.25797 3.26871 3.29910 3.85530 4.16353 4.58215 4.70309 4.73583 4.87827 4.95752 5.04846 5.05440 5.15010 5.23494 5.32889 5.37794 5.55606 5.58801 5.61968 5.71990 5.86861 5.92175 6.05913 6.13335 6.20699 6.24687 6.30319 6.44666 6.55244 6.61273 6.77917 6.88165 7.03909 7.13295 7.23696 7.43082 7.57670 8.30359 8.56716 9.23998 9.42970 10.10392 10.68438 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.003906 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.852430 B = 7167.338348 C = 8170.154536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.428 5.428 4 C -0.305 4.305 5 H 0.092 0.908 6 C 0.038 3.962 7 N -0.862 5.862 8 Si 0.918 3.082 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.476 3.524 13 O -0.590 6.590 14 C -0.169 4.169 15 C -0.067 4.067 16 C -0.072 4.072 17 C -0.076 4.076 18 C -0.123 4.123 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.207 4.207 22 C 0.132 3.868 23 O -0.307 6.307 24 C 0.028 3.972 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.270 0.730 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -3.801 16.924 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.145 5.145 4 C -0.433 4.433 5 H 0.110 0.890 6 C -0.168 4.168 7 N -0.498 5.498 8 Si 0.744 3.256 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.269 3.731 13 O -0.477 6.477 14 C -0.190 4.190 15 C -0.088 4.088 16 C -0.073 4.073 17 C -0.094 4.094 18 C -0.124 4.124 19 C -0.165 4.165 20 C -0.104 4.104 21 C -0.225 4.225 22 C 0.086 3.914 23 O -0.219 6.219 24 C -0.068 4.068 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.286 -3.287 16.594 18.046 hybrid contribution 0.011 0.023 -0.511 0.512 sum -6.275 -3.264 16.083 17.569 Atomic orbital electron populations 1.22247 0.97970 1.00387 1.01806 1.21533 0.91813 0.85595 1.03583 1.43478 1.54084 1.11592 1.05336 1.19426 1.36466 0.97106 0.90302 0.89009 1.25432 0.94069 0.96534 1.00724 1.69938 1.28845 1.17148 1.33914 0.86135 0.78564 0.78875 0.82009 1.19602 1.20929 1.19793 1.17075 0.83938 0.88043 0.84068 1.90646 1.51404 1.18564 1.87099 1.22416 1.02098 1.00336 0.94171 1.22001 0.97264 0.99964 0.89546 1.18513 1.03608 0.93735 0.91415 1.21199 0.96989 0.93075 0.98146 1.19710 1.02762 0.96979 0.92917 1.20718 1.00758 0.92431 1.02625 1.20805 0.98622 0.93561 0.97461 1.21089 1.07514 0.97142 0.96805 1.19169 0.94757 0.84053 0.93434 1.86103 1.80102 1.23992 1.31736 1.23060 1.01222 0.98009 0.84475 0.93603 0.92385 0.93056 0.87729 0.93150 0.92039 0.86608 0.84755 0.84838 0.91426 0.91900 0.91489 0.86094 0.85555 0.88204 0.92810 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.05 37.16 0.37 -2.66 16 2 C 0.10 2.18 5.28 -4.04 -0.02 2.16 16 3 N -0.43 -11.25 2.52 -118.00 -0.30 -11.55 16 4 C -0.30 -8.65 8.88 -15.04 -0.13 -8.78 16 5 H 0.09 2.72 7.77 -52.48 -0.41 2.31 16 6 C 0.04 1.01 4.87 -17.44 -0.09 0.92 16 7 N -0.86 -23.43 11.60 55.50 0.64 -22.78 16 8 Si 0.92 20.66 29.61 -169.99 -5.03 15.63 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 C 0.48 12.53 7.36 -14.90 -0.11 12.42 16 13 O -0.59 -17.69 15.97 5.12 0.08 -17.60 16 14 C -0.17 -3.58 7.94 -39.32 -0.31 -3.89 16 15 C -0.07 -1.31 9.17 -37.18 -0.34 -1.65 16 16 C -0.07 -1.19 5.88 -104.93 -0.62 -1.80 16 17 C -0.08 -1.09 9.05 -39.12 -0.35 -1.44 16 18 C -0.12 -1.48 5.87 -104.68 -0.61 -2.10 16 19 C -0.11 -0.99 10.00 36.01 0.36 -0.63 16 20 C -0.09 -0.96 9.68 -39.49 -0.38 -1.34 16 21 C -0.21 -2.46 9.03 -39.49 -0.36 -2.82 16 22 C 0.13 1.96 6.71 -38.63 -0.26 1.70 16 23 O -0.31 -4.50 9.68 -18.80 -0.18 -4.68 16 24 C 0.03 0.26 9.81 101.05 0.99 1.25 16 25 H 0.04 0.80 7.48 -51.93 -0.39 0.41 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 2.51 5.63 -51.93 -0.29 2.22 16 29 H 0.05 1.02 6.43 -51.93 -0.33 0.69 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.12 2.12 3.98 -52.49 -0.21 1.91 16 32 H 0.13 2.91 7.03 -52.49 -0.37 2.54 16 33 H 0.13 1.80 6.17 -52.48 -0.32 1.48 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 41 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -33.34 341.50 -7.04 -40.38 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.54 Total: 4.13 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.86 Total: -8.66 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.35 Total: -34.33 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.10 Total: -22.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.34 -7.04 -40.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.901 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds