Wall clock time and date at job start Tue Mar 31 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47222 * 2 1 4 4 C 1.36748 * 119.99985 * 264.20666 * 3 2 1 5 5 H 1.08004 * 120.00197 * 142.45065 * 4 3 2 6 6 C 1.39096 * 119.99869 * 322.45923 * 4 3 2 7 7 N 1.31339 * 120.00141 * 337.83771 * 6 4 3 8 8 Si 1.86806 * 119.99852 * 157.84074 * 6 4 3 9 9 H 1.48501 * 109.47240 * 59.99481 * 8 6 4 10 10 H 1.48494 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46786 * 299.99551 * 8 6 4 12 12 C 1.34771 * 120.00384 * 84.21205 * 3 2 1 13 13 O 1.21777 * 120.00370 * 179.97438 * 12 3 2 14 14 C 1.41794 * 119.99866 * 359.97438 * 12 3 2 15 15 C 1.35157 * 119.99969 * 180.02562 * 14 12 3 16 16 C 1.46890 * 119.99733 * 180.02562 * 15 14 12 17 17 C 1.39960 * 120.21851 * 359.97438 * 16 15 14 18 18 C 1.37744 * 119.87734 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.83797 * 179.97438 * 18 17 16 20 20 C 1.38568 * 120.32567 * 0.02562 * 18 17 16 21 21 C 1.38146 * 120.43928 * 359.97438 * 20 18 17 22 22 C 1.38587 * 120.11274 * 359.74373 * 21 20 18 23 23 O 1.35699 * 120.16432 * 180.25097 * 22 21 20 24 24 C 1.42904 * 116.99522 * 0.25732 * 23 22 21 25 25 H 1.09000 * 109.47360 * 300.00250 * 1 2 3 26 26 H 1.09006 * 109.47381 * 59.99948 * 1 2 3 27 27 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47360 * 239.99750 * 2 1 3 29 29 H 1.09003 * 109.46924 * 119.99835 * 2 1 3 30 30 H 0.97001 * 119.99770 * 180.02562 * 7 6 4 31 31 H 1.07998 * 119.99778 * 0.02562 * 14 12 3 32 32 H 1.08001 * 119.99863 * 0.27479 * 15 14 12 33 33 H 1.08003 * 120.05980 * 0.02562 * 17 16 15 34 34 H 1.09000 * 109.46848 * 89.99740 * 19 18 17 35 35 H 1.08990 * 109.47179 * 209.99999 * 19 18 17 36 36 H 1.09003 * 109.47276 * 329.99972 * 19 18 17 37 37 H 1.08000 * 119.78272 * 179.97438 * 20 18 17 38 38 H 1.08005 * 119.94174 * 180.02562 * 21 20 18 39 39 H 1.09006 * 109.46767 * 179.97438 * 24 23 22 40 40 H 1.09000 * 109.47506 * 299.99969 * 24 23 22 41 41 H 1.09003 * 109.46965 * 60.00416 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3589 1.9860 -1.1782 5 1 2.1376 3.0318 -1.3322 6 6 2.9904 1.2542 -2.1785 7 7 3.6437 0.1558 -1.8757 8 14 2.9091 1.8336 -3.9525 9 1 3.5148 3.1852 -4.0600 10 1 3.6561 0.8856 -4.8176 11 1 1.4912 1.8904 -4.3903 12 6 2.1320 2.0558 1.1612 13 8 2.5384 3.2038 1.1612 14 6 1.7784 1.4289 2.3828 15 6 1.8919 2.1056 3.5473 16 6 1.5261 1.4560 4.8129 17 6 1.0591 0.1366 4.8182 18 6 0.7186 -0.4660 6.0092 19 6 0.2152 -1.8864 6.0138 20 6 0.8356 0.2279 7.2029 21 6 1.2951 1.5307 7.2130 22 6 1.6483 2.1526 6.0260 23 8 2.1046 3.4305 6.0353 24 6 2.2016 4.0755 7.3069 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0843 -0.3543 -2.5732 31 1 1.4184 0.4107 2.3829 32 1 2.2477 3.1253 3.5468 33 1 0.9666 -0.4083 3.8903 34 1 1.0578 -2.5701 6.1178 35 1 -0.4712 -2.0259 6.8488 36 1 -0.3050 -2.0906 5.0779 37 1 0.5657 -0.2529 8.1315 38 1 1.3835 2.0638 8.1482 39 1 2.5790 5.0892 7.1722 40 1 1.2163 4.1129 7.7714 41 1 2.8840 3.5161 7.9468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:55 Heat of formation + Delta-G solvation = -46.714165 kcal Electronic energy + Delta-G solvation = -22557.272691 eV Core-core repulsion = 19209.402531 eV Total energy + Delta-G solvation = -3347.870160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26411 -40.54826 -38.67057 -37.03204 -35.21475 -34.03556 -32.70855 -31.22605 -30.83616 -28.69593 -27.45935 -26.75323 -25.11350 -23.94485 -22.64353 -21.57276 -19.62576 -19.23955 -18.71784 -18.02669 -17.32297 -16.82268 -16.68540 -16.11657 -15.70350 -15.57964 -15.38074 -14.86516 -14.63881 -14.54691 -14.48710 -14.28575 -13.60858 -13.59661 -13.28975 -13.20365 -12.93865 -12.81782 -12.71031 -12.64660 -12.36538 -12.14589 -12.06420 -11.83985 -11.82834 -11.77241 -11.15793 -10.90445 -10.43807 -9.58959 -9.43557 -8.77333 -8.38993 -6.05880 -0.37932 0.43842 1.06691 1.40258 1.43621 1.51727 2.28585 2.35916 2.52970 2.85564 3.12812 3.14237 3.72034 3.78877 3.96297 4.16102 4.19280 4.28507 4.35160 4.39386 4.41441 4.49179 4.60504 4.69177 4.70825 4.76068 4.81618 4.94849 5.00208 5.02195 5.08147 5.24391 5.26668 5.27583 5.41342 5.50595 5.53735 5.59531 5.70326 5.87604 6.20070 6.45580 6.56002 7.17054 7.42937 8.08210 8.63888 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.003906 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.852430 B = 7167.338348 C = 8170.154536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.440 5.440 4 C -0.348 4.348 5 H 0.062 0.938 6 C 0.007 3.993 7 N -0.883 5.883 8 Si 0.985 3.015 9 H -0.278 1.278 10 H -0.267 1.267 11 H -0.261 1.261 12 C 0.464 3.536 13 O -0.648 6.648 14 C -0.201 4.201 15 C -0.031 4.031 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.128 4.128 19 C -0.108 4.108 20 C -0.068 4.068 21 C -0.205 4.205 22 C 0.124 3.876 23 O -0.341 6.341 24 C 0.017 3.983 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.277 0.723 31 H 0.145 0.855 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -6.056 19.521 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.156 5.156 4 C -0.477 4.477 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.519 5.519 8 Si 0.807 3.193 9 H -0.203 1.203 10 H -0.192 1.192 11 H -0.186 1.186 12 C 0.258 3.742 13 O -0.539 6.539 14 C -0.222 4.222 15 C -0.052 4.052 16 C -0.119 4.119 17 C -0.095 4.095 18 C -0.128 4.128 19 C -0.164 4.164 20 C -0.086 4.086 21 C -0.223 4.223 22 C 0.078 3.922 23 O -0.254 6.254 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.680 -5.587 19.204 21.424 hybrid contribution 0.453 0.750 -0.984 1.318 sum -7.226 -4.836 18.220 20.189 Atomic orbital electron populations 1.22127 0.94906 1.02794 1.01338 1.21665 0.94310 0.83253 1.03279 1.43714 1.54168 1.12983 1.04750 1.19368 1.39284 0.96640 0.92361 0.92063 1.26201 0.92780 0.96453 1.04233 1.69995 1.28725 1.17810 1.35368 0.85152 0.79152 0.78136 0.76827 1.20324 1.19160 1.18591 1.17872 0.83016 0.87543 0.85728 1.90579 1.54137 1.21030 1.88139 1.22116 1.06218 1.01763 0.92074 1.22035 0.93595 0.98371 0.91228 1.18476 1.07601 0.95377 0.90409 1.21341 0.96467 0.92129 0.99539 1.20097 1.01949 0.98467 0.92284 1.20787 1.01494 0.90363 1.03788 1.21354 0.95628 0.92936 0.98668 1.21460 1.06423 0.97653 0.96787 1.19414 0.94564 0.84271 0.93942 1.86067 1.80123 1.24325 1.34931 1.23392 1.02900 0.98440 0.82937 0.92992 0.93925 0.89054 0.89681 0.91564 0.91338 0.83717 0.87814 0.84646 0.90528 0.89692 0.91293 0.82158 0.82377 0.87143 0.90904 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.05 71.98 0.72 -4.81 16 2 C 0.10 4.41 5.28 86.38 0.46 4.86 16 3 N -0.44 -24.38 2.52 -645.44 -1.63 -26.01 16 4 C -0.35 -20.93 8.88 84.13 0.75 -20.19 16 5 H 0.06 3.94 7.77 -2.91 -0.02 3.92 16 6 C 0.01 0.39 4.87 84.97 0.41 0.80 16 7 N -0.88 -48.94 11.60 21.69 0.25 -48.68 16 8 Si 0.98 43.31 29.61 68.60 2.03 45.34 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 12 C 0.46 26.06 7.36 85.12 0.63 26.69 16 13 O -0.65 -42.03 15.97 -4.59 -0.07 -42.11 16 14 C -0.20 -8.92 7.94 22.44 0.18 -8.74 16 15 C -0.03 -1.28 9.17 23.83 0.22 -1.07 16 16 C -0.12 -3.88 5.88 -20.06 -0.12 -4.00 16 17 C -0.08 -2.07 9.05 22.57 0.20 -1.87 16 18 C -0.13 -2.61 5.87 -19.90 -0.12 -2.73 16 19 C -0.11 -1.50 10.00 71.24 0.71 -0.79 16 20 C -0.07 -1.19 9.68 22.33 0.22 -0.97 16 21 C -0.20 -4.13 9.03 22.33 0.20 -3.93 16 22 C 0.12 3.55 6.71 22.89 0.15 3.70 16 23 O -0.34 -9.97 9.68 -90.18 -0.87 -10.85 16 24 C 0.02 0.29 9.81 113.37 1.11 1.40 16 25 H 0.05 1.80 7.48 -2.39 -0.02 1.78 16 26 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.09 4.16 5.63 -2.39 -0.01 4.15 16 29 H 0.07 2.70 6.43 -2.39 -0.02 2.68 16 30 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.15 5.37 3.98 -2.91 -0.01 5.36 16 32 H 0.10 4.89 7.03 -2.91 -0.02 4.87 16 33 H 0.14 3.47 6.17 -2.91 -0.02 3.46 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 37 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.12 6.30 -2.91 -0.02 2.11 16 39 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.07 0.94 7.65 -2.39 -0.02 0.92 16 41 H 0.07 0.94 7.67 -2.39 -0.02 0.93 16 Total: -1.00 -79.10 341.50 6.47 -72.62 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.04 Total: 21.31 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.73 Total: -11.63 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.38 Total: -74.70 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.95 Total: -52.95 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.10 6.47 -72.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.910 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds