Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99972 * 2 1 4 4 C 1.38755 * 120.05348 * 359.71879 * 3 2 1 5 5 C 1.38121 * 119.93853 * 179.74697 * 4 3 2 6 6 C 1.38291 * 120.05849 * 0.50929 * 5 4 3 7 7 C 1.38245 * 120.11064 * 359.77099 * 6 5 4 8 8 C 1.50698 * 119.97098 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46743 * 270.01717 * 8 7 6 10 10 C 1.50698 * 109.46743 * 179.97438 * 9 8 7 11 11 O 1.21297 * 120.00317 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99921 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99872 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99523 * 224.28692 * 13 12 10 15 15 C 1.38939 * 120.00390 * 44.28593 * 13 12 10 16 16 N 1.31418 * 119.99687 * 18.21326 * 15 13 12 17 17 Si 1.86799 * 120.00138 * 198.20720 * 15 13 12 18 18 H 1.48498 * 109.47284 * 60.00204 * 17 15 13 19 19 H 1.48504 * 109.46939 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47130 * 299.99831 * 17 15 13 21 21 C 1.46499 * 120.00059 * 0.02562 * 12 10 9 22 22 C 1.52996 * 117.49984 * 183.22505 * 21 12 10 23 23 C 1.52999 * 60.00122 * 252.50928 * 22 21 12 24 24 C 1.38164 * 120.05320 * 359.97101 * 7 6 5 25 25 H 1.09007 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47558 * 300.00474 * 1 2 3 27 27 H 1.09006 * 109.47022 * 60.00834 * 1 2 3 28 28 H 1.07998 * 120.02937 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97081 * 180.25768 * 5 4 3 30 30 H 1.07999 * 119.94446 * 179.74472 * 6 5 4 31 31 H 1.08995 * 109.47001 * 30.01869 * 8 7 6 32 32 H 1.09003 * 109.46697 * 150.01809 * 8 7 6 33 33 H 1.08995 * 109.47496 * 299.99849 * 9 8 7 34 34 H 1.09001 * 109.46954 * 60.00692 * 9 8 7 35 35 H 0.97001 * 119.99860 * 174.92949 * 16 15 13 36 36 H 1.09000 * 115.54623 * 328.93324 * 21 12 10 37 37 H 1.09002 * 117.49824 * 359.97438 * 22 21 12 38 38 H 1.09005 * 117.50057 * 145.02398 * 22 21 12 39 39 H 1.09005 * 117.49975 * 252.51192 * 23 22 21 40 40 H 1.08999 * 117.51728 * 107.47829 * 23 22 21 41 41 H 1.08007 * 120.02702 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0059 5 6 1.9209 3.6047 -0.0006 6 6 3.3019 3.6758 -0.0001 7 6 4.0560 2.5171 -0.0001 8 6 5.5608 2.5982 -0.0001 9 6 6.0700 2.6260 -1.4426 10 6 7.5747 2.7078 -1.4426 11 8 8.1804 2.7400 -0.3922 12 7 8.2476 2.7450 -2.6098 13 6 9.6166 2.8188 -2.6098 14 1 10.1205 3.5006 -3.2789 15 6 10.3556 2.0166 -1.7492 16 7 9.8043 0.9555 -1.2041 17 14 12.1329 2.4463 -1.3670 18 1 12.1937 3.7926 -0.7434 19 1 12.6949 1.4404 -0.4302 20 1 12.9233 2.4469 -2.6242 21 6 7.5161 2.7066 -3.8785 22 6 8.3391 2.6755 -5.1679 23 6 7.5854 3.9468 -4.7719 24 6 3.4311 1.2848 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.2128 2.3203 -0.0109 29 1 1.3340 4.5113 -0.0010 30 1 3.7922 4.6380 -0.0001 31 1 5.8757 3.5062 0.5140 32 1 5.9715 1.7288 0.5135 33 1 5.7551 1.7180 -1.9567 34 1 5.6593 3.4954 -1.9561 35 1 10.3397 0.3549 -0.6623 36 1 6.5802 2.1479 -3.8648 37 1 9.4249 2.6842 -5.0722 38 1 7.9449 2.0962 -6.0029 39 1 6.6953 4.2037 -5.3462 40 1 8.1750 4.7914 -4.4154 41 1 4.0206 0.3798 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -14.995039 kcal Electronic energy + Delta-G solvation = -22577.569654 eV Core-core repulsion = 19231.074938 eV Total energy + Delta-G solvation = -3346.494716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.11774 -38.60435 -37.60233 -36.05789 -33.45505 -32.55140 -30.90748 -30.52363 -29.03998 -27.36690 -25.46007 -23.50017 -22.43045 -21.66454 -21.12659 -20.67376 -18.95572 -17.67784 -16.30953 -16.25971 -15.99289 -15.90782 -15.79599 -14.79544 -14.52478 -14.15991 -13.94479 -13.74411 -13.43543 -13.13781 -12.89660 -12.57532 -12.19988 -11.96907 -11.90339 -11.45858 -11.32167 -11.04644 -10.94051 -10.82535 -10.80103 -10.66145 -10.61608 -10.27782 -10.11989 -9.91021 -9.69012 -8.74810 -8.61778 -8.15360 -7.91160 -6.96307 -6.05900 -3.81247 1.40662 1.52673 3.22025 3.33303 3.40411 3.43684 3.83507 4.19313 4.32615 4.76098 4.81083 4.83733 4.96354 4.97340 4.99225 5.18667 5.28490 5.36066 5.45114 5.48604 5.61579 5.63908 5.73811 5.78432 5.86730 5.94356 6.03877 6.21420 6.25002 6.27782 6.34184 6.45833 6.52544 6.54967 6.72660 6.80050 6.84126 6.94961 6.97439 7.40994 7.66462 8.33121 9.12918 9.22580 9.73108 10.36975 11.03425 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.003764 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.962505 B = 7437.181629 C = 7903.190906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.220 4.220 5 C -0.082 4.082 6 C -0.154 4.154 7 C -0.029 4.029 8 C -0.064 4.064 9 C -0.124 4.124 10 C 0.484 3.516 11 O -0.535 6.535 12 N -0.430 5.430 13 C -0.350 4.350 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.834 5.834 17 Si 0.912 3.088 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.077 3.923 22 C -0.175 4.175 23 C -0.208 4.208 24 C -0.148 4.148 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.264 0.736 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.272 1.660 -1.068 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.239 4.239 5 C -0.100 4.100 6 C -0.172 4.172 7 C -0.029 4.029 8 C -0.102 4.102 9 C -0.165 4.165 10 C 0.272 3.728 11 O -0.413 6.413 12 N -0.151 5.151 13 C -0.477 4.477 14 H 0.093 0.907 15 C -0.136 4.136 16 N -0.467 5.467 17 Si 0.740 3.260 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.205 1.205 21 C -0.030 4.030 22 C -0.212 4.212 23 C -0.247 4.247 24 C -0.167 4.167 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.851 1.335 -0.312 16.906 hybrid contribution 0.458 0.169 -0.018 0.489 sum -16.392 1.504 -0.330 16.464 Atomic orbital electron populations 1.23007 0.78812 1.03652 1.01148 1.86082 1.21038 1.27214 1.88905 1.19017 0.92304 0.83960 0.96769 1.21125 0.99575 0.92521 1.10688 1.20878 0.94600 0.96736 0.97759 1.21033 0.93534 0.98361 1.04306 1.19958 0.96547 0.91883 0.94537 1.20365 0.88048 1.04449 0.97313 1.21554 0.96003 1.02386 0.96552 1.19805 0.87512 0.81117 0.84414 1.90520 1.69571 1.50633 1.30551 1.42781 1.05095 1.66240 1.01001 1.18790 0.80040 1.23193 1.25674 0.90712 1.25225 0.98656 0.93707 0.96030 1.69818 1.36539 1.10411 1.29981 0.86282 0.83081 0.78593 0.78069 1.19989 1.21217 1.20454 1.21688 0.97068 0.99198 0.85006 1.23054 1.00629 1.00039 0.97507 1.23305 1.02441 0.93459 1.05538 1.20406 0.91088 0.98684 1.06504 0.88470 0.92865 0.92807 0.85972 0.86085 0.85797 0.90286 0.90048 0.90746 0.90763 0.92611 0.88039 0.87541 0.89885 0.89883 0.89173 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.10 10.50 -19.43 -0.20 -4.30 16 3 C 0.12 1.71 6.69 -39.22 -0.26 1.45 16 4 C -0.22 -2.61 9.04 -39.43 -0.36 -2.96 16 5 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 6 C -0.15 -2.07 9.70 -39.56 -0.38 -2.46 16 7 C -0.03 -0.44 5.13 -104.65 -0.54 -0.98 16 8 C -0.06 -1.14 4.63 -27.88 -0.13 -1.27 16 9 C -0.12 -2.40 4.30 -27.88 -0.12 -2.52 16 10 C 0.48 12.25 6.96 -10.99 -0.08 12.18 16 11 O -0.53 -15.67 13.74 5.54 0.08 -15.60 16 12 N -0.43 -10.86 2.83 -107.73 -0.31 -11.16 16 13 C -0.35 -9.66 7.92 -14.94 -0.12 -9.78 16 14 H 0.08 2.00 7.26 -52.49 -0.38 1.62 16 15 C 0.07 2.11 4.38 -17.47 -0.08 2.03 16 16 N -0.83 -24.93 11.74 55.50 0.65 -24.28 16 17 Si 0.91 22.18 29.59 -169.99 -5.03 17.15 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.08 1.56 5.87 -67.93 -0.40 1.16 16 22 C -0.17 -3.21 9.80 -26.73 -0.26 -3.47 16 23 C -0.21 -3.61 10.36 -26.73 -0.28 -3.89 16 24 C -0.15 -2.25 9.64 -39.43 -0.38 -2.63 16 25 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 27 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 28 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 32 H 0.08 1.59 8.04 -51.93 -0.42 1.17 16 33 H 0.07 1.39 7.57 -51.93 -0.39 0.99 16 34 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.26 7.58 8.32 -40.82 -0.34 7.24 16 36 H 0.10 1.87 6.96 -51.93 -0.36 1.51 16 37 H 0.11 2.17 6.72 -51.93 -0.35 1.82 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -33.45 343.39 -8.38 -41.83 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.96 Total: 4.45 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.78 Total: -13.26 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.35 Total: -35.45 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.13 Total: -19.90 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.45 -8.38 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.838 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds