Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35901 * 116.99972 * 2 1 4 4 C 1.38755 * 120.05348 * 359.71879 * 3 2 1 5 5 C 1.38121 * 119.93853 * 179.74697 * 4 3 2 6 6 C 1.38291 * 120.05849 * 0.50929 * 5 4 3 7 7 C 1.38245 * 120.11064 * 359.77099 * 6 5 4 8 8 C 1.50698 * 119.97098 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46743 * 270.01717 * 8 7 6 10 10 C 1.50698 * 109.46743 * 179.97438 * 9 8 7 11 11 O 1.21297 * 120.00317 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99921 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99872 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99523 * 224.28692 * 13 12 10 15 15 C 1.38939 * 120.00390 * 44.28593 * 13 12 10 16 16 N 1.31418 * 119.99687 * 18.21326 * 15 13 12 17 17 Si 1.86799 * 120.00138 * 198.20720 * 15 13 12 18 18 H 1.48498 * 109.47284 * 60.00204 * 17 15 13 19 19 H 1.48504 * 109.46939 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47130 * 299.99831 * 17 15 13 21 21 C 1.46499 * 120.00059 * 0.02562 * 12 10 9 22 22 C 1.52996 * 117.49984 * 183.22505 * 21 12 10 23 23 C 1.52999 * 60.00122 * 252.50928 * 22 21 12 24 24 C 1.38164 * 120.05320 * 359.97101 * 7 6 5 25 25 H 1.09007 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47558 * 300.00474 * 1 2 3 27 27 H 1.09006 * 109.47022 * 60.00834 * 1 2 3 28 28 H 1.07998 * 120.02937 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97081 * 180.25768 * 5 4 3 30 30 H 1.07999 * 119.94446 * 179.74472 * 6 5 4 31 31 H 1.08995 * 109.47001 * 30.01869 * 8 7 6 32 32 H 1.09003 * 109.46697 * 150.01809 * 8 7 6 33 33 H 1.08995 * 109.47496 * 299.99849 * 9 8 7 34 34 H 1.09001 * 109.46954 * 60.00692 * 9 8 7 35 35 H 0.97001 * 119.99860 * 174.92949 * 16 15 13 36 36 H 1.09000 * 115.54623 * 328.93324 * 21 12 10 37 37 H 1.09002 * 117.49824 * 359.97438 * 22 21 12 38 38 H 1.09005 * 117.50057 * 145.02398 * 22 21 12 39 39 H 1.09005 * 117.49975 * 252.51192 * 23 22 21 40 40 H 1.08999 * 117.51728 * 107.47829 * 23 22 21 41 41 H 1.08007 * 120.02702 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0059 5 6 1.9209 3.6047 -0.0006 6 6 3.3019 3.6758 -0.0001 7 6 4.0560 2.5171 -0.0001 8 6 5.5608 2.5982 -0.0001 9 6 6.0700 2.6260 -1.4426 10 6 7.5747 2.7078 -1.4426 11 8 8.1804 2.7400 -0.3922 12 7 8.2476 2.7450 -2.6098 13 6 9.6166 2.8188 -2.6098 14 1 10.1205 3.5006 -3.2789 15 6 10.3556 2.0166 -1.7492 16 7 9.8043 0.9555 -1.2041 17 14 12.1329 2.4463 -1.3670 18 1 12.1937 3.7926 -0.7434 19 1 12.6949 1.4404 -0.4302 20 1 12.9233 2.4469 -2.6242 21 6 7.5161 2.7066 -3.8785 22 6 8.3391 2.6755 -5.1679 23 6 7.5854 3.9468 -4.7719 24 6 3.4311 1.2848 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 0.2128 2.3203 -0.0109 29 1 1.3340 4.5113 -0.0010 30 1 3.7922 4.6380 -0.0001 31 1 5.8757 3.5062 0.5140 32 1 5.9715 1.7288 0.5135 33 1 5.7551 1.7180 -1.9567 34 1 5.6593 3.4954 -1.9561 35 1 10.3397 0.3549 -0.6623 36 1 6.5802 2.1479 -3.8648 37 1 9.4249 2.6842 -5.0722 38 1 7.9449 2.0962 -6.0029 39 1 6.6953 4.2037 -5.3462 40 1 8.1750 4.7914 -4.4154 41 1 4.0206 0.3798 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = -34.622010 kcal Electronic energy + Delta-G solvation = -22578.420744 eV Core-core repulsion = 19231.074938 eV Total energy + Delta-G solvation = -3347.345805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11141 -40.37955 -38.66201 -37.74567 -35.06054 -34.29137 -32.81462 -31.55762 -30.35165 -28.13088 -27.26594 -25.07555 -23.44248 -23.10701 -22.75053 -21.88233 -20.77550 -18.74452 -18.13736 -17.76333 -17.23734 -16.91764 -16.71172 -16.60840 -16.13243 -15.84640 -15.38378 -15.06849 -14.61653 -14.49653 -14.10261 -13.91381 -13.77740 -13.52754 -12.99891 -12.85766 -12.75690 -12.72640 -12.60238 -12.35045 -12.22183 -12.12312 -11.89243 -11.84127 -11.67842 -11.58779 -11.20489 -10.70530 -9.98646 -9.70926 -9.12580 -8.94435 -8.18607 -5.97074 0.37131 0.51692 1.35746 1.44630 1.48128 2.26349 2.39679 2.43790 2.79554 3.11849 3.16221 3.38150 3.79959 3.90960 4.11149 4.13226 4.18350 4.26854 4.29443 4.35048 4.36268 4.42826 4.46391 4.57048 4.58858 4.71101 4.74065 4.75713 4.90504 5.03502 5.07840 5.12647 5.25221 5.31401 5.37061 5.47261 5.50993 5.51712 5.74434 5.87042 6.21919 6.50425 7.06023 7.23036 7.73219 8.39660 8.90211 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.003764 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.962505 B = 7437.181629 C = 7903.190906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.117 3.883 4 C -0.212 4.212 5 C -0.073 4.073 6 C -0.160 4.160 7 C -0.041 4.041 8 C -0.052 4.052 9 C -0.106 4.106 10 C 0.466 3.534 11 O -0.589 6.589 12 N -0.446 5.446 13 C -0.359 4.359 14 H 0.077 0.923 15 C 0.021 3.979 16 N -0.873 5.873 17 Si 0.970 3.030 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.256 1.256 21 C 0.043 3.957 22 C -0.172 4.172 23 C -0.177 4.177 24 C -0.172 4.172 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.258 0.742 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.094 3.037 -2.670 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.072 3.928 4 C -0.230 4.230 5 C -0.091 4.091 6 C -0.178 4.178 7 C -0.041 4.041 8 C -0.090 4.090 9 C -0.146 4.146 10 C 0.256 3.744 11 O -0.470 6.470 12 N -0.167 5.167 13 C -0.486 4.486 14 H 0.095 0.905 15 C -0.185 4.185 16 N -0.509 5.509 17 Si 0.795 3.205 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.180 1.180 21 C -0.062 4.062 22 C -0.209 4.209 23 C -0.216 4.216 24 C -0.191 4.191 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.687 2.719 -1.974 19.972 hybrid contribution 1.208 -0.241 0.423 1.302 sum -18.479 2.478 -1.551 18.709 Atomic orbital electron populations 1.23350 0.76301 1.05473 1.02446 1.86057 1.23685 1.27088 1.88779 1.19097 0.91862 0.85170 0.96633 1.21505 1.01146 0.91636 1.08726 1.21272 0.93909 0.98134 0.95765 1.21203 0.94569 0.97876 1.04201 1.19649 0.94626 0.92968 0.96893 1.20139 0.90365 1.02510 0.96029 1.21413 0.91633 1.03677 0.97895 1.20812 0.89892 0.79911 0.83805 1.90472 1.71241 1.52921 1.32409 1.43033 1.04837 1.65790 1.02990 1.19073 0.81705 1.22603 1.25236 0.90549 1.26066 1.02691 0.93660 0.96065 1.69943 1.37869 1.11668 1.31388 0.85373 0.78980 0.77579 0.78536 1.20677 1.21367 1.18025 1.22000 0.98005 1.02606 0.83576 1.23106 0.99192 1.01366 0.97270 1.23315 1.03194 0.91750 1.03345 1.20366 0.92321 0.98080 1.08316 0.86652 0.91485 0.91395 0.82735 0.82502 0.84741 0.91182 0.93179 0.90151 0.88101 0.93244 0.86017 0.90134 0.86572 0.85704 0.90668 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.36 10.50 -92.43 -0.97 -9.33 16 3 C 0.12 3.08 6.69 22.51 0.15 3.23 16 4 C -0.21 -4.28 9.04 22.37 0.20 -4.08 16 5 C -0.07 -1.44 10.04 22.25 0.22 -1.22 16 6 C -0.16 -4.00 9.70 22.28 0.22 -3.79 16 7 C -0.04 -1.26 5.13 -19.88 -0.10 -1.37 16 8 C -0.05 -1.97 4.63 29.85 0.14 -1.83 16 9 C -0.11 -4.16 4.30 29.85 0.13 -4.03 16 10 C 0.47 24.43 6.96 87.66 0.61 25.04 16 11 O -0.59 -36.34 13.74 -3.08 -0.04 -36.38 16 12 N -0.45 -22.91 2.83 -613.14 -1.74 -24.65 16 13 C -0.36 -20.25 7.92 84.04 0.67 -19.59 16 14 H 0.08 4.16 7.26 -2.91 -0.02 4.14 16 15 C 0.02 1.24 4.38 84.92 0.37 1.61 16 16 N -0.87 -54.56 11.74 21.66 0.25 -54.30 16 17 Si 0.97 46.80 29.59 68.60 2.03 48.83 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.04 1.70 5.87 44.99 0.26 1.96 16 22 C -0.17 -5.99 9.80 30.59 0.30 -5.69 16 23 C -0.18 -5.65 10.36 30.59 0.32 -5.33 16 24 C -0.17 -5.32 9.64 22.36 0.22 -5.11 16 25 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.07 0.72 7.67 -2.39 -0.02 0.70 16 27 H 0.07 0.72 7.65 -2.38 -0.02 0.71 16 28 H 0.16 2.08 6.30 -2.91 -0.02 2.06 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 32 H 0.05 2.14 8.04 -2.39 -0.02 2.12 16 33 H 0.08 3.04 7.57 -2.39 -0.02 3.02 16 34 H 0.10 3.38 8.11 -2.39 -0.02 3.36 16 35 H 0.26 15.61 8.32 -92.71 -0.77 14.84 16 36 H 0.12 4.25 6.96 -2.39 -0.02 4.23 16 37 H 0.08 3.24 6.72 -2.39 -0.02 3.23 16 38 H 0.12 3.25 8.14 -2.38 -0.02 3.23 16 39 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -77.03 343.39 5.37 -71.66 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.02 Total: 23.01 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.81 Total: -18.84 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.48 Total: -78.95 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.01 Total: -45.71 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -77.03 5.37 -71.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.038 kcal (2) G-P(sol) polarization free energy of solvation -77.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds