Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47651 * 2 1 4 4 C 1.36908 * 119.99903 * 279.93248 * 3 2 1 5 5 H 1.07999 * 119.99755 * 165.56240 * 4 3 2 6 6 C 1.39019 * 119.99892 * 345.55882 * 4 3 2 7 7 N 1.31384 * 120.00115 * 35.82740 * 6 4 3 8 8 Si 1.86797 * 120.00060 * 215.81883 * 6 4 3 9 9 H 1.48507 * 109.46907 * 60.00346 * 8 6 4 10 10 H 1.48501 * 109.47186 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47458 * 300.00543 * 8 6 4 12 12 C 1.34776 * 120.00169 * 99.92185 * 3 2 1 13 13 O 1.21612 * 120.00323 * 186.67012 * 12 3 2 14 14 C 1.47499 * 119.99631 * 6.67702 * 12 3 2 15 15 C 1.39802 * 120.08930 * 143.88735 * 14 12 3 16 16 C 1.37683 * 119.90318 * 180.02562 * 15 14 12 17 17 C 1.39016 * 120.09507 * 0.02562 * 16 15 14 18 18 O 1.35714 * 119.90570 * 179.97438 * 17 16 15 19 19 C 1.42907 * 116.99572 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.46680 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49952 * 243.74974 * 20 19 18 22 22 C 1.53005 * 117.49859 * 175.08630 * 20 19 18 23 23 C 1.39008 * 120.18559 * 0.22870 * 17 16 15 24 24 C 1.37692 * 120.09672 * 359.49208 * 23 17 16 25 25 H 1.08997 * 109.47030 * 74.91943 * 1 2 3 26 26 H 1.08994 * 109.47062 * 194.92395 * 1 2 3 27 27 H 1.09002 * 109.47068 * 314.92165 * 1 2 3 28 28 H 1.09001 * 109.47070 * 240.00089 * 2 1 3 29 29 H 1.09005 * 109.47290 * 120.00187 * 2 1 3 30 30 H 0.97006 * 120.00135 * 179.97438 * 7 6 4 31 31 H 1.07999 * 120.05091 * 359.97438 * 15 14 12 32 32 H 1.07999 * 119.95677 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.47197 * 299.99617 * 19 18 17 34 34 H 1.09000 * 109.47022 * 60.00358 * 19 18 17 35 35 H 1.09002 * 115.55319 * 29.41991 * 20 19 18 36 36 H 1.08999 * 117.49947 * 359.97438 * 21 20 19 37 37 H 1.08994 * 117.49970 * 145.02506 * 21 20 19 38 38 H 1.08994 * 117.50014 * 214.97951 * 22 20 19 39 39 H 1.08997 * 117.49834 * 0.02562 * 22 20 19 40 40 H 1.08003 * 119.95044 * 179.72478 * 23 17 16 41 41 H 1.07998 * 120.04644 * 180.22901 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.0539 2.0947 -1.1679 5 1 2.1865 3.1662 -1.1422 6 6 1.9192 1.4399 -2.3868 7 7 1.1161 0.4055 -2.4917 8 14 2.8801 2.0310 -3.8757 9 1 4.3350 1.9566 -3.5873 10 1 2.5618 1.1708 -5.0436 11 1 2.5070 3.4358 -4.1799 12 6 2.4328 1.9494 1.1497 13 8 2.7232 3.1301 1.1743 14 6 2.5341 1.1393 2.3781 15 6 3.5651 1.3774 3.2917 16 6 3.6564 0.6185 4.4369 17 6 2.7255 -0.3837 4.6850 18 8 2.8194 -1.1298 5.8147 19 6 1.8296 -2.1424 6.0075 20 6 2.0970 -2.8726 7.3252 21 6 2.4472 -4.3601 7.2501 22 6 1.0764 -3.9214 7.7714 23 6 1.7018 -0.6273 3.7766 24 6 1.5998 0.1308 2.6317 25 1 -0.3633 0.2674 -0.9922 26 1 -0.3633 -0.9929 0.2646 27 1 -0.3633 0.7257 0.7277 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.0218 -0.0512 -3.3423 31 1 4.2895 2.1550 3.0992 32 1 4.4528 0.8015 5.1431 33 1 0.8417 -1.6832 6.0411 34 1 1.8719 -2.8536 5.1825 35 1 2.5817 -2.2800 8.1011 36 1 2.4866 -4.8187 6.2620 37 1 3.1619 -4.7462 7.9768 38 1 0.8899 -4.0191 8.8409 39 1 0.2146 -4.0915 7.1261 40 1 0.9833 -1.4098 3.9710 41 1 0.8021 -0.0567 1.9283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 12.227468 kcal Electronic energy + Delta-G solvation = -22651.575364 eV Core-core repulsion = 19306.261105 eV Total energy + Delta-G solvation = -3345.314259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.15560 -38.92885 -37.52377 -36.23992 -35.17843 -32.23114 -30.74635 -29.84383 -29.45765 -27.63121 -25.12728 -22.82301 -22.72155 -22.48237 -21.90664 -20.73606 -19.36664 -18.08755 -16.90456 -16.50707 -16.38128 -15.78597 -15.04765 -14.86899 -14.59967 -14.23163 -14.06029 -13.92986 -13.46453 -13.00005 -12.88725 -12.65718 -12.38127 -12.00361 -11.87071 -11.65213 -11.49359 -11.33301 -11.12715 -11.07159 -10.86455 -10.80449 -10.43989 -10.36189 -10.23163 -10.19935 -9.84446 -8.71758 -8.60226 -8.43917 -7.92166 -7.77424 -6.55587 -3.74968 1.53286 1.69395 3.03839 3.15559 3.23759 3.29877 3.51349 3.73246 4.07157 4.37762 4.42988 4.53473 4.67870 4.79585 4.92610 5.01187 5.01827 5.16111 5.24926 5.28878 5.31141 5.53681 5.60407 5.68376 5.72837 5.75478 5.86473 6.00985 6.11636 6.34168 6.46828 6.50846 6.58134 6.59527 6.72368 6.95589 7.02811 7.23430 7.40798 7.57829 7.69799 8.09236 8.46449 9.13562 9.37999 9.99313 10.45362 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.003508 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.381395 B = 7978.914096 C = 8591.791343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.426 5.426 4 C -0.318 4.318 5 H 0.108 0.892 6 C 0.046 3.954 7 N -0.842 5.842 8 Si 0.907 3.093 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.471 3.529 13 O -0.594 6.594 14 C -0.127 4.127 15 C -0.042 4.042 16 C -0.160 4.160 17 C 0.125 3.875 18 O -0.315 6.315 19 C 0.090 3.910 20 C -0.155 4.155 21 C -0.177 4.177 22 C -0.171 4.171 23 C -0.218 4.218 24 C -0.077 4.077 25 H 0.101 0.899 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.270 0.730 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -11.028 14.243 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.031 4.031 3 N -0.143 5.143 4 C -0.445 4.445 5 H 0.126 0.874 6 C -0.160 4.160 7 N -0.479 5.479 8 Si 0.732 3.268 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.261 3.739 13 O -0.482 6.482 14 C -0.131 4.131 15 C -0.061 4.061 16 C -0.178 4.178 17 C 0.079 3.921 18 O -0.229 6.229 19 C 0.015 3.985 20 C -0.173 4.173 21 C -0.214 4.214 22 C -0.208 4.208 23 C -0.236 4.236 24 C -0.096 4.096 25 H 0.119 0.881 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.414 -10.601 14.203 17.728 hybrid contribution 0.096 -0.066 -0.863 0.871 sum -0.318 -10.667 13.340 17.083 Atomic orbital electron populations 1.22216 0.96480 0.98315 1.04486 1.22209 0.94641 0.84274 1.01970 1.43713 1.52072 1.11703 1.06772 1.19575 1.49039 0.94027 0.81816 0.87448 1.25255 0.95547 0.96049 0.99126 1.70145 1.28741 1.22373 1.26609 0.86311 0.81426 0.79069 0.79960 1.19811 1.21059 1.19661 1.17645 0.85805 0.87437 0.82966 1.90598 1.56854 1.15681 1.85018 1.20204 0.97325 0.98235 0.97321 1.20985 0.96611 0.97025 0.91468 1.20256 1.00588 0.97482 0.99498 1.19087 0.95166 0.92008 0.85793 1.85955 1.51538 1.46372 1.39005 1.22261 0.91167 0.89131 0.95922 1.22113 1.05008 0.91587 0.98629 1.23118 0.98569 0.96547 1.03144 1.23004 0.93471 1.02430 1.01937 1.21106 1.00919 1.04701 0.96903 1.21972 0.98921 0.92960 0.95714 0.88051 0.94476 0.94845 0.88422 0.92472 0.91904 0.84806 0.85377 0.91580 0.91835 0.86630 0.88452 0.88476 0.88243 0.88449 0.85809 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.39 37.16 0.31 -2.91 16 2 C 0.09 2.04 4.88 -4.04 -0.02 2.02 16 3 N -0.43 -10.98 2.65 -116.00 -0.31 -11.28 16 4 C -0.32 -8.76 9.23 -15.00 -0.14 -8.90 16 5 H 0.11 3.16 7.43 -52.49 -0.39 2.77 16 6 C 0.05 1.17 5.03 -17.45 -0.09 1.08 16 7 N -0.84 -20.73 8.44 55.50 0.47 -20.26 16 8 Si 0.91 20.06 29.67 -169.99 -5.04 15.02 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.47 12.08 7.33 -12.49 -0.09 11.99 16 13 O -0.59 -17.19 16.47 5.27 0.09 -17.11 16 14 C -0.13 -2.68 5.43 -104.96 -0.57 -3.25 16 15 C -0.04 -0.78 9.61 -39.20 -0.38 -1.15 16 16 C -0.16 -2.57 9.97 -39.50 -0.39 -2.96 16 17 C 0.12 1.94 6.70 -39.01 -0.26 1.68 16 18 O -0.31 -4.35 10.12 -18.85 -0.19 -4.55 16 19 C 0.09 0.95 5.02 37.16 0.19 1.14 16 20 C -0.16 -1.36 6.05 -90.62 -0.55 -1.91 16 21 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 22 C -0.17 -1.18 10.26 -26.69 -0.27 -1.45 16 23 C -0.22 -3.37 9.01 -39.50 -0.36 -3.72 16 24 C -0.08 -1.41 7.36 -39.20 -0.29 -1.69 16 25 H 0.10 2.33 6.06 -51.93 -0.31 2.02 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.68 7.40 -51.93 -0.38 0.30 16 28 H 0.10 2.32 5.87 -51.93 -0.30 2.01 16 29 H 0.06 1.15 4.28 -51.93 -0.22 0.93 16 30 H 0.27 6.28 8.31 -40.82 -0.34 5.95 16 31 H 0.13 2.45 8.01 -52.49 -0.42 2.03 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.07 0.65 7.66 -51.93 -0.40 0.26 16 34 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 35 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.56 6.28 -52.48 -0.33 1.23 16 41 H 0.15 2.73 3.37 -52.49 -0.18 2.55 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -30.04 331.95 -8.58 -38.61 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.41 Total: 6.18 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.18 Total: -11.62 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.16 Total: -31.54 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.10 Total: -21.65 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.04 Total: 15.02 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.04 -8.58 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.842 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds