Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47651 * 2 1 4 4 C 1.36908 * 119.99903 * 279.93248 * 3 2 1 5 5 H 1.07999 * 119.99755 * 165.56240 * 4 3 2 6 6 C 1.39019 * 119.99892 * 345.55882 * 4 3 2 7 7 N 1.31384 * 120.00115 * 35.82740 * 6 4 3 8 8 Si 1.86797 * 120.00060 * 215.81883 * 6 4 3 9 9 H 1.48507 * 109.46907 * 60.00346 * 8 6 4 10 10 H 1.48501 * 109.47186 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47458 * 300.00543 * 8 6 4 12 12 C 1.34776 * 120.00169 * 99.92185 * 3 2 1 13 13 O 1.21612 * 120.00323 * 186.67012 * 12 3 2 14 14 C 1.47499 * 119.99631 * 6.67702 * 12 3 2 15 15 C 1.39802 * 120.08930 * 143.88735 * 14 12 3 16 16 C 1.37683 * 119.90318 * 180.02562 * 15 14 12 17 17 C 1.39016 * 120.09507 * 0.02562 * 16 15 14 18 18 O 1.35714 * 119.90570 * 179.97438 * 17 16 15 19 19 C 1.42907 * 116.99572 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.46680 * 180.02562 * 19 18 17 21 21 C 1.53003 * 117.49952 * 243.74974 * 20 19 18 22 22 C 1.53005 * 117.49859 * 175.08630 * 20 19 18 23 23 C 1.39008 * 120.18559 * 0.22870 * 17 16 15 24 24 C 1.37692 * 120.09672 * 359.49208 * 23 17 16 25 25 H 1.08997 * 109.47030 * 74.91943 * 1 2 3 26 26 H 1.08994 * 109.47062 * 194.92395 * 1 2 3 27 27 H 1.09002 * 109.47068 * 314.92165 * 1 2 3 28 28 H 1.09001 * 109.47070 * 240.00089 * 2 1 3 29 29 H 1.09005 * 109.47290 * 120.00187 * 2 1 3 30 30 H 0.97006 * 120.00135 * 179.97438 * 7 6 4 31 31 H 1.07999 * 120.05091 * 359.97438 * 15 14 12 32 32 H 1.07999 * 119.95677 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.47197 * 299.99617 * 19 18 17 34 34 H 1.09000 * 109.47022 * 60.00358 * 19 18 17 35 35 H 1.09002 * 115.55319 * 29.41991 * 20 19 18 36 36 H 1.08999 * 117.49947 * 359.97438 * 21 20 19 37 37 H 1.08994 * 117.49970 * 145.02506 * 21 20 19 38 38 H 1.08994 * 117.50014 * 214.97951 * 22 20 19 39 39 H 1.08997 * 117.49834 * 0.02562 * 22 20 19 40 40 H 1.08003 * 119.95044 * 179.72478 * 23 17 16 41 41 H 1.07998 * 120.04644 * 180.22901 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.0539 2.0947 -1.1679 5 1 2.1865 3.1662 -1.1422 6 6 1.9192 1.4399 -2.3868 7 7 1.1161 0.4055 -2.4917 8 14 2.8801 2.0310 -3.8757 9 1 4.3350 1.9566 -3.5873 10 1 2.5618 1.1708 -5.0436 11 1 2.5070 3.4358 -4.1799 12 6 2.4328 1.9494 1.1497 13 8 2.7232 3.1301 1.1743 14 6 2.5341 1.1393 2.3781 15 6 3.5651 1.3774 3.2917 16 6 3.6564 0.6185 4.4369 17 6 2.7255 -0.3837 4.6850 18 8 2.8194 -1.1298 5.8147 19 6 1.8296 -2.1424 6.0075 20 6 2.0970 -2.8726 7.3252 21 6 2.4472 -4.3601 7.2501 22 6 1.0764 -3.9214 7.7714 23 6 1.7018 -0.6273 3.7766 24 6 1.5998 0.1308 2.6317 25 1 -0.3633 0.2674 -0.9922 26 1 -0.3633 -0.9929 0.2646 27 1 -0.3633 0.7257 0.7277 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.0218 -0.0512 -3.3423 31 1 4.2895 2.1550 3.0992 32 1 4.4528 0.8015 5.1431 33 1 0.8417 -1.6832 6.0411 34 1 1.8719 -2.8536 5.1825 35 1 2.5817 -2.2800 8.1011 36 1 2.4866 -4.8187 6.2620 37 1 3.1619 -4.7462 7.9768 38 1 0.8899 -4.0191 8.8409 39 1 0.2146 -4.0915 7.1261 40 1 0.9833 -1.4098 3.9710 41 1 0.8021 -0.0567 1.9283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = -3.867575 kcal Electronic energy + Delta-G solvation = -22652.273297 eV Core-core repulsion = 19306.261105 eV Total energy + Delta-G solvation = -3346.012193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51606 -40.42716 -38.51874 -37.37721 -37.13516 -34.10238 -32.26771 -31.29746 -31.08246 -28.61069 -26.97477 -24.36862 -23.79592 -23.56201 -23.22923 -21.59561 -20.96686 -19.27676 -18.81860 -18.18373 -17.42566 -16.86891 -16.66959 -16.12861 -16.00363 -15.89339 -15.55612 -15.06760 -15.02695 -14.54775 -14.18247 -13.99285 -13.87742 -13.52612 -13.23922 -13.10104 -12.86007 -12.66749 -12.45065 -12.34167 -12.25703 -12.18328 -12.08638 -11.73005 -11.53065 -11.35333 -10.88046 -10.64897 -10.40557 -10.04653 -9.80828 -9.15808 -8.50773 -5.80175 0.10338 0.35151 1.35337 1.42218 1.50655 2.04369 2.07740 2.23980 2.74441 2.89933 2.92986 3.14444 3.71751 3.81919 3.93644 3.94131 3.96833 4.08439 4.24321 4.26279 4.34884 4.47521 4.55659 4.59747 4.66446 4.76816 4.80856 4.82675 5.01830 5.02972 5.04911 5.17420 5.24482 5.26209 5.27415 5.37536 5.48691 5.53675 5.68468 5.91829 6.05898 6.41946 6.50936 7.14470 7.43484 8.04677 8.48518 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.003508 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.381395 B = 7978.914096 C = 8591.791343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 N -0.435 5.435 4 C -0.370 4.370 5 H 0.071 0.929 6 C 0.026 3.974 7 N -0.838 5.838 8 Si 0.967 3.033 9 H -0.280 1.280 10 H -0.263 1.263 11 H -0.275 1.275 12 C 0.456 3.544 13 O -0.647 6.647 14 C -0.160 4.160 15 C -0.049 4.049 16 C -0.156 4.156 17 C 0.140 3.860 18 O -0.318 6.318 19 C 0.081 3.919 20 C -0.172 4.172 21 C -0.178 4.178 22 C -0.158 4.158 23 C -0.206 4.206 24 C -0.077 4.077 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.027 0.973 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.280 0.720 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.161 0.839 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -14.087 15.556 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 N -0.151 5.151 4 C -0.496 4.496 5 H 0.089 0.911 6 C -0.181 4.181 7 N -0.473 5.473 8 Si 0.790 3.210 9 H -0.205 1.205 10 H -0.187 1.187 11 H -0.201 1.201 12 C 0.248 3.752 13 O -0.538 6.538 14 C -0.164 4.164 15 C -0.068 4.068 16 C -0.174 4.174 17 C 0.093 3.907 18 O -0.231 6.231 19 C 0.007 3.993 20 C -0.190 4.190 21 C -0.215 4.215 22 C -0.195 4.195 23 C -0.224 4.224 24 C -0.096 4.096 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.178 0.822 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.048 -13.720 15.516 20.738 hybrid contribution 0.251 0.762 -1.130 1.386 sum -0.797 -12.958 14.386 19.378 Atomic orbital electron populations 1.22066 0.95098 1.00400 1.02819 1.22305 0.95714 0.82503 1.02285 1.43905 1.52033 1.12758 1.06360 1.19358 1.53339 0.93155 0.83783 0.91118 1.25825 0.95188 0.96405 1.00639 1.70174 1.27440 1.22039 1.27663 0.85432 0.79323 0.78744 0.77470 1.20536 1.18707 1.20060 1.18447 0.84932 0.87414 0.84368 1.90527 1.59003 1.18087 1.86190 1.19948 1.00097 0.99971 0.96371 1.20975 0.96186 0.97515 0.92157 1.20429 1.01358 0.96930 0.98677 1.19172 0.94222 0.91258 0.86017 1.85984 1.52694 1.46701 1.37748 1.22588 0.90831 0.88633 0.97293 1.22091 1.06953 0.92103 0.97846 1.23215 0.99323 0.95381 1.03600 1.23116 0.93317 1.00245 1.02851 1.21376 1.01250 1.04498 0.95325 1.21923 0.98180 0.92553 0.96934 0.90646 0.90467 0.95410 0.90064 0.90039 0.90923 0.85706 0.82908 0.90519 0.90746 0.87130 0.88255 0.87794 0.87103 0.87592 0.82180 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.88 8.39 71.98 0.60 -5.27 16 2 C 0.09 4.18 4.88 86.38 0.42 4.60 16 3 N -0.44 -23.40 2.65 -639.18 -1.69 -25.09 16 4 C -0.37 -21.49 9.23 84.09 0.78 -20.71 16 5 H 0.07 4.51 7.43 -2.91 -0.02 4.49 16 6 C 0.03 1.37 5.03 84.95 0.43 1.79 16 7 N -0.84 -41.14 8.44 21.68 0.18 -40.95 16 8 Si 0.97 41.72 29.67 68.60 2.04 43.75 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.46 24.71 7.33 86.68 0.64 25.34 16 13 O -0.65 -40.21 16.47 -4.07 -0.07 -40.28 16 14 C -0.16 -6.88 5.43 -20.08 -0.11 -6.99 16 15 C -0.05 -1.85 9.61 22.52 0.22 -1.63 16 16 C -0.16 -4.73 9.97 22.33 0.22 -4.51 16 17 C 0.14 3.92 6.70 22.64 0.15 4.08 16 18 O -0.32 -7.69 10.12 -90.35 -0.91 -8.61 16 19 C 0.08 1.40 5.02 71.98 0.36 1.76 16 20 C -0.17 -2.48 6.05 -10.79 -0.07 -2.55 16 21 C -0.18 -2.11 10.18 30.62 0.31 -1.79 16 22 C -0.16 -1.62 10.26 30.62 0.31 -1.31 16 23 C -0.21 -5.71 9.01 22.33 0.20 -5.51 16 24 C -0.08 -2.72 7.36 22.52 0.17 -2.55 16 25 H 0.07 3.45 6.06 -2.39 -0.01 3.44 16 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.03 1.12 7.40 -2.39 -0.02 1.10 16 28 H 0.08 3.86 5.87 -2.39 -0.01 3.84 16 29 H 0.08 3.21 4.28 -2.38 -0.01 3.20 16 30 H 0.28 12.67 8.31 -92.70 -0.77 11.90 16 31 H 0.12 4.81 8.01 -2.91 -0.02 4.79 16 32 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 34 H 0.07 1.15 7.37 -2.39 -0.02 1.14 16 35 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 1.14 8.03 -2.39 -0.02 1.12 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.16 3.24 6.28 -2.91 -0.02 3.23 16 41 H 0.15 5.24 3.37 -2.91 -0.01 5.23 16 Total: -1.00 -68.87 331.95 5.22 -63.64 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.05 Total: 22.78 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.63 Total: -15.25 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -1.51 Total: -66.04 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.98 Total: -48.89 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.04 Total: 43.75 kcal Total: -68.87 5.22 -63.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.777 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds