Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47620 * 2 1 4 4 C 1.36750 * 119.99846 * 264.66415 * 3 2 1 5 5 H 1.08001 * 119.99597 * 145.36557 * 4 3 2 6 6 C 1.39069 * 120.00260 * 325.37140 * 4 3 2 7 7 N 1.31364 * 119.99849 * 338.61905 * 6 4 3 8 8 Si 1.86795 * 120.00249 * 158.62047 * 6 4 3 9 9 H 1.48502 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46976 * 119.99795 * 8 6 4 11 11 H 1.48497 * 109.47084 * 239.99889 * 8 6 4 12 12 C 1.34772 * 120.00457 * 84.66468 * 3 2 1 13 13 O 1.21842 * 120.00568 * 180.02562 * 12 3 2 14 14 C 1.41337 * 119.99583 * 0.02562 * 12 3 2 15 15 C 1.35791 * 120.00085 * 180.02562 * 14 12 3 16 16 C 1.41510 * 120.00220 * 180.02562 * 15 14 12 17 17 C 1.38036 * 126.11122 * 359.97021 * 16 15 14 18 18 C 1.40286 * 106.52969 * 180.02562 * 17 16 15 19 19 C 1.35181 * 107.21419 * 0.02562 * 18 17 16 20 20 C 1.50698 * 125.47875 * 179.97438 * 19 18 17 21 21 H 1.09002 * 115.55896 * 334.30692 * 20 19 18 22 22 C 1.53001 * 117.49660 * 188.62201 * 20 19 18 23 23 C 1.52992 * 59.99879 * 252.51033 * 22 20 19 24 24 H 1.09003 * 117.52119 * 107.48526 * 23 22 20 25 25 C 1.53002 * 117.49922 * 252.50994 * 23 22 20 26 26 O 1.34040 * 109.03911 * 0.24368 * 19 18 17 27 27 H 1.09003 * 109.47040 * 59.99397 * 1 2 3 28 28 H 1.08994 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46497 * 300.00243 * 1 2 3 30 30 H 1.09003 * 109.47012 * 239.99669 * 2 1 3 31 31 H 1.09002 * 109.47552 * 120.00031 * 2 1 3 32 32 H 0.96998 * 119.99973 * 180.02562 * 7 6 4 33 33 H 1.08001 * 120.00094 * 359.97438 * 14 12 3 34 34 H 1.08001 * 119.99821 * 359.97438 * 15 14 12 35 35 H 1.08007 * 126.73655 * 359.97003 * 17 16 15 36 36 H 1.08005 * 126.39693 * 179.97438 * 18 17 16 37 37 H 1.08999 * 117.49668 * 145.01704 * 22 20 19 38 38 H 1.09003 * 117.49809 * 0.02562 * 22 20 19 39 39 H 1.08996 * 109.47240 * 128.62129 * 25 23 22 40 40 H 1.08999 * 109.46689 * 8.62382 * 25 23 22 41 41 H 1.08996 * 109.47319 * 248.62539 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3502 1.9890 -1.1792 5 1 2.1707 3.0458 -1.3111 6 6 2.9186 1.2464 -2.2085 7 7 3.5184 0.1082 -1.9435 8 14 2.8294 1.8676 -3.9679 9 1 2.1068 3.1646 -3.9989 10 1 4.2042 2.0548 -4.4971 11 1 2.1067 0.8776 -4.8063 12 6 2.1408 2.0527 1.1621 13 8 2.5466 3.2016 1.1620 14 6 1.7984 1.4242 2.3808 15 6 1.9212 2.1010 3.5517 16 6 1.5789 1.4716 4.7720 17 6 1.1094 0.1818 4.9184 18 6 0.9041 -0.0146 6.2922 19 6 1.2471 1.1344 6.9163 20 6 1.1840 1.3750 8.4026 21 1 0.4615 0.7670 8.9472 22 6 1.4215 2.8030 8.8978 23 6 2.4896 1.7298 9.1168 24 1 3.3944 1.7888 8.5118 25 6 2.6814 1.2042 10.5409 26 8 1.6467 2.0273 5.9999 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9152 -0.4096 -2.6613 33 1 1.4383 0.4060 2.3808 34 1 2.2809 3.1193 3.5516 35 1 0.9336 -0.5351 4.1300 36 1 0.5392 -0.9154 6.7633 37 1 0.8552 3.1346 9.7681 38 1 1.6229 3.5686 8.1484 39 1 2.6435 0.1149 10.5342 40 1 1.8885 1.5914 11.1808 41 1 3.6485 1.5318 10.9220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = 23.320810 kcal Electronic energy + Delta-G solvation = -22030.797654 eV Core-core repulsion = 18685.964438 eV Total energy + Delta-G solvation = -3344.833216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41900 -38.82247 -37.94319 -35.23983 -33.84959 -32.60147 -32.09100 -29.62269 -29.50164 -27.89519 -25.64552 -23.91700 -22.38765 -21.95271 -21.36961 -20.86032 -19.87329 -18.11609 -17.28437 -16.78335 -16.24710 -15.94627 -15.17120 -14.74800 -14.51264 -14.34389 -13.80996 -13.68351 -13.36067 -13.07394 -12.92555 -12.77833 -12.69436 -12.33963 -12.06732 -11.90609 -11.78563 -11.72336 -11.31946 -11.13169 -10.88560 -10.87303 -10.53230 -10.36892 -10.33722 -10.14215 -10.08568 -9.44985 -9.04457 -8.47729 -7.63332 -7.42916 -6.46162 -3.98948 0.90321 2.24610 2.91011 3.03062 3.16923 3.21327 3.28197 3.60617 4.07557 4.25644 4.42831 4.53537 4.58375 4.84973 4.99073 5.01244 5.07009 5.13331 5.23859 5.36311 5.45000 5.49877 5.60893 5.72156 5.75226 5.80437 5.91777 5.94917 6.00682 6.05595 6.17882 6.24304 6.32318 6.48412 6.58515 6.68349 6.81567 6.87171 7.19837 7.33655 7.48053 8.16632 8.43787 9.11408 9.30402 9.96618 10.55715 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037619 B = 0.002867 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.133940 B = 9764.697293 C =10067.825615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 N -0.420 5.420 4 C -0.297 4.297 5 H 0.097 0.903 6 C 0.034 3.966 7 N -0.858 5.858 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.467 3.533 13 O -0.592 6.592 14 C -0.135 4.135 15 C -0.066 4.066 16 C 0.034 3.966 17 C -0.196 4.196 18 C -0.197 4.197 19 C 0.010 3.990 20 C -0.078 4.078 21 H 0.133 0.867 22 C -0.167 4.167 23 C -0.142 4.142 24 H 0.108 0.892 25 C -0.122 4.122 26 O -0.166 6.166 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.051 0.949 32 H 0.271 0.729 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 -3.745 17.898 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.034 4.034 3 N -0.136 5.136 4 C -0.425 4.425 5 H 0.115 0.885 6 C -0.172 4.172 7 N -0.496 5.496 8 Si 0.748 3.252 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.260 3.740 13 O -0.480 6.480 14 C -0.156 4.156 15 C -0.088 4.088 16 C -0.015 4.015 17 C -0.216 4.216 18 C -0.217 4.217 19 C -0.041 4.041 20 C -0.096 4.096 21 H 0.150 0.850 22 C -0.204 4.204 23 C -0.160 4.160 24 H 0.126 0.874 25 C -0.179 4.179 26 O -0.063 6.063 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.216 -3.067 17.776 18.777 hybrid contribution -0.091 -0.241 -0.960 0.994 sum -5.307 -3.308 16.816 17.941 Atomic orbital electron populations 1.22234 0.97792 1.00536 1.01791 1.21709 0.92013 0.85357 1.04341 1.43592 1.53012 1.11725 1.05299 1.19616 1.37935 0.96033 0.88966 0.88498 1.25469 0.94364 0.96367 1.00952 1.69893 1.31326 1.14939 1.33392 0.85942 0.78309 0.79281 0.81716 1.18952 1.20565 1.20405 1.16823 0.84980 0.88279 0.83958 1.90677 1.51824 1.18412 1.87059 1.22330 0.99682 1.00180 0.93415 1.19991 1.00751 1.00688 0.87330 1.19953 1.05140 0.92844 0.83610 1.22208 1.06042 0.96441 0.96886 1.21304 1.07780 0.98820 0.93751 1.21417 1.04073 0.88803 0.89780 1.20553 1.01730 1.00913 0.86355 0.84972 1.23195 1.02182 0.91620 1.03369 1.22528 0.93328 1.02466 0.97725 0.87402 1.21380 1.02143 1.01086 0.93310 1.83984 1.67050 1.40008 1.15249 0.92337 0.92911 0.93655 0.86759 0.93019 0.91884 0.86175 0.84555 0.83032 0.83518 0.87988 0.88011 0.91920 0.92345 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 10.07 37.16 0.37 -2.58 16 2 C 0.09 1.93 5.28 -4.04 -0.02 1.91 16 3 N -0.42 -10.73 2.54 -118.15 -0.30 -11.03 16 4 C -0.30 -8.19 8.96 -15.05 -0.13 -8.32 16 5 H 0.10 2.80 7.71 -52.49 -0.40 2.40 16 6 C 0.03 0.88 4.93 -17.44 -0.09 0.79 16 7 N -0.86 -22.59 11.32 55.50 0.63 -21.96 16 8 Si 0.92 20.12 29.60 -169.99 -5.03 15.09 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.47 11.87 7.35 -15.08 -0.11 11.76 16 13 O -0.59 -17.16 15.94 5.06 0.08 -17.08 16 14 C -0.13 -2.76 8.05 -39.28 -0.32 -3.08 16 15 C -0.07 -1.26 9.51 -39.21 -0.37 -1.63 16 16 C 0.03 0.58 7.03 -38.41 -0.27 0.31 16 17 C -0.20 -2.93 10.21 -38.89 -0.40 -3.33 16 18 C -0.20 -2.58 10.76 -39.90 -0.43 -3.01 16 19 C 0.01 0.14 6.79 -35.40 -0.24 -0.10 16 20 C -0.08 -0.77 5.95 -91.78 -0.55 -1.31 16 21 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 22 C -0.17 -1.51 9.81 -26.73 -0.26 -1.78 16 23 C -0.14 -1.28 6.11 -90.63 -0.55 -1.83 16 24 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 25 C -0.12 -0.80 10.19 37.16 0.38 -0.42 16 26 O -0.17 -2.69 10.35 4.60 0.05 -2.64 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.78 7.53 -51.93 -0.39 0.38 16 30 H 0.11 2.69 5.36 -51.93 -0.28 2.41 16 31 H 0.05 1.02 6.40 -51.93 -0.33 0.68 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.12 2.14 4.67 -52.49 -0.24 1.89 16 34 H 0.14 2.76 7.46 -52.49 -0.39 2.37 16 35 H 0.15 2.03 7.15 -52.48 -0.38 1.65 16 36 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 38 H 0.10 1.06 7.94 -51.93 -0.41 0.65 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -31.27 347.47 -8.08 -39.35 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.75 Total: 5.68 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.99 Total: -12.63 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.33 Total: -33.00 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.13 Total: -19.72 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.27 -8.08 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.671 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds