Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47620 * 2 1 4 4 C 1.36750 * 119.99846 * 264.66415 * 3 2 1 5 5 H 1.08001 * 119.99597 * 145.36557 * 4 3 2 6 6 C 1.39069 * 120.00260 * 325.37140 * 4 3 2 7 7 N 1.31364 * 119.99849 * 338.61905 * 6 4 3 8 8 Si 1.86795 * 120.00249 * 158.62047 * 6 4 3 9 9 H 1.48502 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46976 * 119.99795 * 8 6 4 11 11 H 1.48497 * 109.47084 * 239.99889 * 8 6 4 12 12 C 1.34772 * 120.00457 * 84.66468 * 3 2 1 13 13 O 1.21842 * 120.00568 * 180.02562 * 12 3 2 14 14 C 1.41337 * 119.99583 * 0.02562 * 12 3 2 15 15 C 1.35791 * 120.00085 * 180.02562 * 14 12 3 16 16 C 1.41510 * 120.00220 * 180.02562 * 15 14 12 17 17 C 1.38036 * 126.11122 * 359.97021 * 16 15 14 18 18 C 1.40286 * 106.52969 * 180.02562 * 17 16 15 19 19 C 1.35181 * 107.21419 * 0.02562 * 18 17 16 20 20 C 1.50698 * 125.47875 * 179.97438 * 19 18 17 21 21 H 1.09002 * 115.55896 * 334.30692 * 20 19 18 22 22 C 1.53001 * 117.49660 * 188.62201 * 20 19 18 23 23 C 1.52992 * 59.99879 * 252.51033 * 22 20 19 24 24 H 1.09003 * 117.52119 * 107.48526 * 23 22 20 25 25 C 1.53002 * 117.49922 * 252.50994 * 23 22 20 26 26 O 1.34040 * 109.03911 * 0.24368 * 19 18 17 27 27 H 1.09003 * 109.47040 * 59.99397 * 1 2 3 28 28 H 1.08994 * 109.47694 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46497 * 300.00243 * 1 2 3 30 30 H 1.09003 * 109.47012 * 239.99669 * 2 1 3 31 31 H 1.09002 * 109.47552 * 120.00031 * 2 1 3 32 32 H 0.96998 * 119.99973 * 180.02562 * 7 6 4 33 33 H 1.08001 * 120.00094 * 359.97438 * 14 12 3 34 34 H 1.08001 * 119.99821 * 359.97438 * 15 14 12 35 35 H 1.08007 * 126.73655 * 359.97003 * 17 16 15 36 36 H 1.08005 * 126.39693 * 179.97438 * 18 17 16 37 37 H 1.08999 * 117.49668 * 145.01704 * 22 20 19 38 38 H 1.09003 * 117.49809 * 0.02562 * 22 20 19 39 39 H 1.08996 * 109.47240 * 128.62129 * 25 23 22 40 40 H 1.08999 * 109.46689 * 8.62382 * 25 23 22 41 41 H 1.08996 * 109.47319 * 248.62539 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3502 1.9890 -1.1792 5 1 2.1707 3.0458 -1.3111 6 6 2.9186 1.2464 -2.2085 7 7 3.5184 0.1082 -1.9435 8 14 2.8294 1.8676 -3.9679 9 1 2.1068 3.1646 -3.9989 10 1 4.2042 2.0548 -4.4971 11 1 2.1067 0.8776 -4.8063 12 6 2.1408 2.0527 1.1621 13 8 2.5466 3.2016 1.1620 14 6 1.7984 1.4242 2.3808 15 6 1.9212 2.1010 3.5517 16 6 1.5789 1.4716 4.7720 17 6 1.1094 0.1818 4.9184 18 6 0.9041 -0.0146 6.2922 19 6 1.2471 1.1344 6.9163 20 6 1.1840 1.3750 8.4026 21 1 0.4615 0.7670 8.9472 22 6 1.4215 2.8030 8.8978 23 6 2.4896 1.7298 9.1168 24 1 3.3944 1.7888 8.5118 25 6 2.6814 1.2042 10.5409 26 8 1.6467 2.0273 5.9999 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9152 -0.4096 -2.6613 33 1 1.4383 0.4060 2.3808 34 1 2.2809 3.1193 3.5516 35 1 0.9336 -0.5351 4.1300 36 1 0.5392 -0.9154 6.7633 37 1 0.8552 3.1346 9.7681 38 1 1.6229 3.5686 8.1484 39 1 2.6435 0.1149 10.5342 40 1 1.8885 1.5914 11.1808 41 1 3.6485 1.5318 10.9220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = 6.563792 kcal Electronic energy + Delta-G solvation = -22031.524293 eV Core-core repulsion = 18685.964438 eV Total energy + Delta-G solvation = -3345.559855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.60540 -40.70128 -38.70727 -37.11859 -35.40315 -34.07553 -33.72529 -31.24675 -30.55288 -28.96216 -27.29662 -25.38473 -23.97865 -23.01334 -22.65195 -21.67276 -21.03343 -19.78917 -18.92372 -18.50887 -17.52337 -17.15562 -17.02002 -16.18441 -15.96091 -15.57997 -15.38956 -14.85627 -14.62840 -14.50441 -14.15333 -13.92619 -13.84349 -13.62502 -13.59063 -13.12773 -12.92248 -12.82250 -12.78358 -12.57244 -12.39986 -12.31838 -12.07811 -11.84677 -11.81713 -11.41262 -11.04032 -10.96074 -10.57570 -10.50755 -9.54861 -8.77271 -8.41097 -6.06443 -0.51057 1.06041 1.38240 1.40747 1.55031 1.73296 1.77562 2.27583 2.55411 2.84963 3.08230 3.13664 3.42375 3.75839 3.84798 3.87056 3.99087 4.05006 4.22632 4.31143 4.39193 4.41374 4.60666 4.67774 4.77841 4.81064 4.86953 4.89641 4.96358 4.98867 5.02150 5.10009 5.16507 5.20040 5.27466 5.32888 5.41090 5.42079 5.54342 5.56232 6.10628 6.16523 6.49903 7.12336 7.38171 8.01933 8.59780 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037619 B = 0.002867 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.133940 B = 9764.697293 C =10067.825615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.088 3.912 3 N -0.433 5.433 4 C -0.340 4.340 5 H 0.065 0.935 6 C 0.004 3.996 7 N -0.879 5.879 8 Si 0.987 3.013 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.259 1.259 12 C 0.458 3.542 13 O -0.647 6.647 14 C -0.165 4.165 15 C -0.027 4.027 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.204 4.204 19 C 0.022 3.978 20 C -0.087 4.087 21 H 0.165 0.835 22 C -0.167 4.167 23 C -0.138 4.138 24 H 0.088 0.912 25 C -0.118 4.118 26 O -0.184 6.184 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.278 0.722 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -6.112 20.389 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.034 4.034 3 N -0.149 5.149 4 C -0.468 4.468 5 H 0.083 0.917 6 C -0.200 4.200 7 N -0.516 5.516 8 Si 0.809 3.191 9 H -0.196 1.196 10 H -0.202 1.202 11 H -0.183 1.183 12 C 0.252 3.748 13 O -0.538 6.538 14 C -0.186 4.186 15 C -0.049 4.049 16 C -0.068 4.068 17 C -0.185 4.185 18 C -0.223 4.223 19 C -0.029 4.029 20 C -0.105 4.105 21 H 0.182 0.818 22 C -0.204 4.204 23 C -0.156 4.156 24 H 0.106 0.894 25 C -0.175 4.175 26 O -0.082 6.082 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.189 0.811 36 H 0.201 0.799 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.649 -5.478 20.265 22.021 hybrid contribution 0.360 0.502 -1.356 1.490 sum -6.289 -4.977 18.909 20.540 Atomic orbital electron populations 1.22127 0.94906 1.02795 1.01384 1.21835 0.94373 0.83134 1.04100 1.43798 1.53292 1.13084 1.04730 1.19487 1.40960 0.95370 0.91028 0.91674 1.26200 0.93194 0.96446 1.04148 1.69948 1.31311 1.15622 1.34739 0.85001 0.78323 0.78788 0.76966 1.19648 1.20208 1.18293 1.17558 0.83929 0.87737 0.85537 1.90616 1.54321 1.20812 1.88099 1.21974 1.03757 1.01535 0.91314 1.19919 0.97103 0.99366 0.88487 1.19685 1.09593 0.94244 0.83304 1.22636 1.02167 0.95199 0.98508 1.21743 1.07796 0.99979 0.92768 1.22359 1.01077 0.88444 0.91063 1.20913 1.03223 1.02055 0.84270 0.81815 1.23266 1.02610 0.90845 1.03706 1.22568 0.92133 1.02138 0.98792 0.89387 1.21393 1.02984 1.01549 0.91568 1.83978 1.67548 1.41171 1.15457 0.93897 0.89154 0.92925 0.88752 0.91273 0.91173 0.83210 0.86834 0.81130 0.79878 0.85369 0.90143 0.91121 0.90812 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 10.07 71.98 0.72 -4.63 16 2 C 0.09 3.83 5.28 86.38 0.46 4.28 16 3 N -0.43 -23.13 2.54 -645.87 -1.64 -24.77 16 4 C -0.34 -19.77 8.96 84.13 0.75 -19.02 16 5 H 0.07 4.08 7.71 -2.91 -0.02 4.06 16 6 C 0.00 0.20 4.93 84.96 0.42 0.62 16 7 N -0.88 -47.05 11.32 21.68 0.25 -46.81 16 8 Si 0.99 42.19 29.60 68.60 2.03 44.22 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 12 C 0.46 24.55 7.35 85.00 0.62 25.17 16 13 O -0.65 -40.23 15.94 -4.80 -0.08 -40.31 16 14 C -0.17 -6.91 8.05 22.46 0.18 -6.73 16 15 C -0.03 -1.07 9.51 22.51 0.21 -0.85 16 16 C -0.02 -0.66 7.03 23.03 0.16 -0.50 16 17 C -0.17 -4.49 10.21 22.72 0.23 -4.25 16 18 C -0.20 -4.56 10.76 22.06 0.24 -4.32 16 19 C 0.02 0.52 6.79 24.98 0.17 0.69 16 20 C -0.09 -1.43 5.95 -11.54 -0.07 -1.50 16 21 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.17 -2.66 9.81 30.59 0.30 -2.36 16 23 C -0.14 -2.14 6.11 -10.80 -0.07 -2.20 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 C -0.12 -1.14 10.19 71.98 0.73 -0.41 16 26 O -0.18 -5.84 10.35 -6.46 -0.07 -5.91 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 1.74 7.53 -2.38 -0.02 1.72 16 30 H 0.09 4.49 5.36 -2.39 -0.01 4.48 16 31 H 0.07 2.68 6.40 -2.39 -0.02 2.66 16 32 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.15 5.18 4.67 -2.91 -0.01 5.17 16 34 H 0.11 4.93 7.46 -2.91 -0.02 4.91 16 35 H 0.17 3.91 7.15 -2.91 -0.02 3.89 16 36 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 37 H 0.13 1.36 8.05 -2.39 -0.02 1.34 16 38 H 0.08 1.64 7.94 -2.39 -0.02 1.62 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.52 7.90 -2.39 -0.02 0.50 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -73.12 347.47 6.59 -66.52 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 1.03 Total: 23.06 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.07 Total: -16.01 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.40 Total: -71.58 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.14 Total: -46.22 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -73.12 6.59 -66.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.088 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds