Wall clock time and date at job start Tue Mar 31 2020 06:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.53008 * 109.46912 * 85.00063 * 3 2 1 5 5 C 1.54263 * 110.03442 * 292.91102 * 4 3 2 6 6 C 1.54965 * 104.16026 * 217.13721 * 5 4 3 7 7 C 1.54886 * 102.77737 * 37.88568 * 6 5 4 8 8 C 1.53873 * 110.03147 * 175.69220 * 4 3 2 9 9 S 1.65597 * 119.99791 * 180.28225 * 2 1 3 10 10 O 1.42103 * 104.27453 * 206.07116 * 9 2 1 11 11 O 1.42101 * 104.27834 * 333.92149 * 9 2 1 12 12 C 1.81392 * 104.45287 * 89.99800 * 9 2 1 13 13 C 1.53002 * 109.47473 * 180.02562 * 12 9 2 14 14 C 1.53000 * 109.47354 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99869 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99910 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47232 * 119.99680 * 19 17 15 22 22 H 1.48498 * 109.46761 * 239.99333 * 19 17 15 23 23 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 24 24 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 25 25 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 26 26 H 1.08990 * 109.47572 * 205.00129 * 3 2 1 27 27 H 1.09003 * 109.47280 * 325.00485 * 3 2 1 28 28 H 1.08995 * 110.01259 * 54.30071 * 4 3 2 29 29 H 1.09008 * 110.48538 * 335.78216 * 5 4 3 30 30 H 1.08997 * 110.48930 * 98.42376 * 5 4 3 31 31 H 1.09002 * 110.71805 * 279.57116 * 6 5 4 32 32 H 1.09004 * 110.92113 * 156.29228 * 6 5 4 33 33 H 1.09001 * 110.48707 * 203.40680 * 7 6 5 34 34 H 1.09000 * 110.59553 * 80.81733 * 7 6 5 35 35 H 1.09006 * 110.02874 * 238.57252 * 8 4 3 36 36 H 1.09005 * 110.03238 * 359.97438 * 8 4 3 37 37 H 1.09005 * 109.47063 * 299.99983 * 12 9 2 38 38 H 1.08995 * 109.47533 * 59.99686 * 12 9 2 39 39 H 1.09005 * 109.46725 * 299.99899 * 13 12 9 40 40 H 1.08995 * 109.47234 * 59.99213 * 13 12 9 41 41 H 1.09001 * 109.46464 * 299.99418 * 14 13 12 42 42 H 1.08991 * 109.47332 * 59.99431 * 14 13 12 43 43 H 0.97007 * 119.99593 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 1.4371 5 6 0.9624 2.1599 2.0045 6 6 1.2461 3.4119 2.8726 7 6 2.3149 4.1677 2.0447 8 6 3.2036 3.0490 1.4630 9 16 2.2930 -1.4341 -0.0071 10 8 3.5395 -1.1221 0.5997 11 8 1.3970 -2.3590 0.5938 12 6 2.5193 -1.8176 -1.7655 13 6 3.2808 -3.1372 -1.9059 14 6 3.4722 -3.4603 -3.3891 15 6 4.2227 -4.7598 -3.5274 16 1 4.5326 -5.3008 -2.6456 17 6 4.5147 -5.2573 -4.7796 18 7 4.1378 -4.5982 -5.8534 19 14 5.4445 -6.8685 -4.9510 20 1 5.7513 -7.4088 -3.6022 21 1 4.6105 -7.8443 -5.6976 22 1 6.7111 -6.6328 -5.6893 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 3.1858 1.1177 -0.4343 27 1 1.6502 2.0043 -0.5894 28 1 2.8001 1.0026 2.0583 29 1 0.2729 2.4045 1.1963 30 1 0.5620 1.3525 2.6174 31 1 1.6435 3.1242 3.8459 32 1 0.3471 4.0176 2.9876 33 1 2.9008 4.8249 2.6874 34 1 1.8462 4.7382 1.2430 35 1 4.0769 2.8978 2.0976 36 1 3.5172 3.3084 0.4518 37 1 1.5450 -1.9078 -2.2460 38 1 3.0865 -1.0179 -2.2417 39 1 4.2550 -3.0474 -1.4253 40 1 2.7132 -3.9367 -1.4298 41 1 2.4981 -3.5500 -3.8700 42 1 4.0400 -2.6608 -3.8648 43 1 4.3429 -4.9485 -6.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068905532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:47 Heat of formation + Delta-G solvation = -103.967672 kcal Electronic energy + Delta-G solvation = -21586.973625 eV Core-core repulsion = 18372.064717 eV Total energy + Delta-G solvation = -3214.908907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.90309 -36.91048 -35.85580 -35.57236 -34.66153 -32.18531 -30.33694 -28.83644 -27.80797 -26.76641 -24.03434 -23.51856 -20.92582 -20.54762 -19.91647 -18.69310 -17.38124 -16.71712 -16.60842 -15.85930 -15.69040 -15.23610 -14.73016 -14.48653 -14.06103 -13.98922 -13.67152 -13.39523 -12.81169 -12.58831 -12.35211 -12.27732 -11.95754 -11.88910 -11.76698 -11.69526 -11.32943 -11.25795 -11.22039 -11.04533 -10.98997 -10.93673 -10.84341 -10.83164 -10.53864 -10.38927 -9.95785 -9.50979 -9.21288 -8.89509 -8.41629 -6.06280 -4.09249 0.45593 2.76733 3.29112 3.36615 3.41710 4.02750 4.29644 4.39811 4.41953 4.44248 4.51018 4.63724 5.07642 5.10109 5.16675 5.19613 5.24780 5.30283 5.33653 5.38874 5.42464 5.46476 5.57749 5.60125 5.68888 5.70224 5.78698 5.84967 5.90519 5.91318 6.07506 6.14820 6.23573 6.28593 6.45114 6.53768 6.87072 7.56713 7.66427 7.91974 8.32497 8.97284 9.55578 11.05009 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.003114 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.033229 B = 8989.214659 C = 9165.101624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.007 6.007 3 C 0.132 3.868 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.119 4.119 9 S 2.597 3.403 10 O -0.958 6.958 11 O -0.960 6.960 12 C -0.610 4.610 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 17.865 13.289 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.843 5.843 3 C 0.007 3.993 4 C -0.134 4.134 5 C -0.154 4.154 6 C -0.165 4.165 7 C -0.162 4.162 8 C -0.157 4.157 9 S 2.693 3.307 10 O -0.948 6.948 11 O -0.951 6.951 12 C -0.742 4.742 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.460 17.409 13.889 23.487 hybrid contribution 0.356 -0.650 -0.987 1.234 sum -7.104 16.759 12.902 22.311 Atomic orbital electron populations 1.21478 0.78693 1.02710 1.02117 1.57610 1.15011 1.21518 1.90151 1.21445 0.96436 0.84984 0.96482 1.22257 0.96071 0.97909 0.97118 1.22475 0.96692 0.97251 0.99011 1.22530 0.98573 0.96680 0.98672 1.22353 0.97184 0.97435 0.99194 1.22147 0.98227 0.93974 1.01396 1.05558 0.73788 0.72795 0.78558 1.93563 1.43998 1.82889 1.74337 1.93561 1.64741 1.62105 1.74643 1.30598 1.10528 1.09392 1.23668 1.21498 0.98165 0.90646 1.04211 1.19066 0.97396 0.96819 0.87511 1.21297 1.36094 1.06580 0.92399 0.92309 1.25025 0.95931 0.97551 0.95912 1.69971 1.46803 1.38920 0.97764 0.86497 0.79573 0.83491 0.78254 1.19585 1.20929 1.20934 0.92511 0.91252 0.91127 0.89989 0.90429 0.90031 0.91470 0.91769 0.91679 0.91851 0.91930 0.91750 0.91505 0.91479 0.85562 0.85554 0.91612 0.91638 0.96142 0.96131 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 8.84 59.85 0.53 1.41 16 2 N -1.01 -11.40 3.07 -121.75 -0.37 -11.77 16 3 C 0.13 1.30 4.45 -4.04 -0.02 1.28 16 4 C -0.11 -1.12 3.15 -89.50 -0.28 -1.41 16 5 C -0.12 -0.99 5.04 -25.03 -0.13 -1.12 16 6 C -0.13 -0.95 6.91 -24.70 -0.17 -1.12 16 7 C -0.12 -0.90 6.83 -25.07 -0.17 -1.07 16 8 C -0.12 -1.01 6.46 -25.62 -0.17 -1.17 16 9 S 2.60 39.23 5.32 -107.50 -0.57 38.66 16 10 O -0.96 -16.78 16.83 -57.54 -0.97 -17.74 16 11 O -0.96 -17.14 17.09 -57.54 -0.98 -18.12 16 12 C -0.61 -9.57 6.18 37.16 0.23 -9.34 16 13 C -0.11 -2.18 5.16 -26.73 -0.14 -2.31 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.06 0.51 7.43 -51.93 -0.39 0.12 16 24 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 25 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 26 H 0.08 0.82 7.60 -51.93 -0.39 0.42 16 27 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 28 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 29 H 0.07 0.51 7.16 -51.92 -0.37 0.14 16 30 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 37 H 0.13 1.78 8.14 -51.92 -0.42 1.35 16 38 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -33.94 353.82 -10.50 -44.44 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.79 Total: -3.61 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -0.86 Total: -27.89 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.36 Total: -37.71 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.95 Total: -35.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 39.23 SS G_CDS: -0.57 Total: 38.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.94 -10.50 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068905532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.529 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds