Wall clock time and date at job start Tue Mar 31 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.53008 * 109.46912 * 85.00063 * 3 2 1 5 5 C 1.54263 * 110.03442 * 292.91102 * 4 3 2 6 6 C 1.54965 * 104.16026 * 217.13721 * 5 4 3 7 7 C 1.54886 * 102.77737 * 37.88568 * 6 5 4 8 8 C 1.53873 * 110.03147 * 175.69220 * 4 3 2 9 9 S 1.65597 * 119.99791 * 180.28225 * 2 1 3 10 10 O 1.42103 * 104.27453 * 206.07116 * 9 2 1 11 11 O 1.42101 * 104.27834 * 333.92149 * 9 2 1 12 12 C 1.81392 * 104.45287 * 89.99800 * 9 2 1 13 13 C 1.53002 * 109.47473 * 180.02562 * 12 9 2 14 14 C 1.53000 * 109.47354 * 180.02562 * 13 12 9 15 15 C 1.50701 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99869 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99910 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47232 * 119.99680 * 19 17 15 22 22 H 1.48498 * 109.46761 * 239.99333 * 19 17 15 23 23 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 24 24 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 25 25 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 26 26 H 1.08990 * 109.47572 * 205.00129 * 3 2 1 27 27 H 1.09003 * 109.47280 * 325.00485 * 3 2 1 28 28 H 1.08995 * 110.01259 * 54.30071 * 4 3 2 29 29 H 1.09008 * 110.48538 * 335.78216 * 5 4 3 30 30 H 1.08997 * 110.48930 * 98.42376 * 5 4 3 31 31 H 1.09002 * 110.71805 * 279.57116 * 6 5 4 32 32 H 1.09004 * 110.92113 * 156.29228 * 6 5 4 33 33 H 1.09001 * 110.48707 * 203.40680 * 7 6 5 34 34 H 1.09000 * 110.59553 * 80.81733 * 7 6 5 35 35 H 1.09006 * 110.02874 * 238.57252 * 8 4 3 36 36 H 1.09005 * 110.03238 * 359.97438 * 8 4 3 37 37 H 1.09005 * 109.47063 * 299.99983 * 12 9 2 38 38 H 1.08995 * 109.47533 * 59.99686 * 12 9 2 39 39 H 1.09005 * 109.46725 * 299.99899 * 13 12 9 40 40 H 1.08995 * 109.47234 * 59.99213 * 13 12 9 41 41 H 1.09001 * 109.46464 * 299.99418 * 14 13 12 42 42 H 1.08991 * 109.47332 * 59.99431 * 14 13 12 43 43 H 0.97007 * 119.99593 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 1.4371 5 6 0.9624 2.1599 2.0045 6 6 1.2461 3.4119 2.8726 7 6 2.3149 4.1677 2.0447 8 6 3.2036 3.0490 1.4630 9 16 2.2930 -1.4341 -0.0071 10 8 3.5395 -1.1221 0.5997 11 8 1.3970 -2.3590 0.5938 12 6 2.5193 -1.8176 -1.7655 13 6 3.2808 -3.1372 -1.9059 14 6 3.4722 -3.4603 -3.3891 15 6 4.2227 -4.7598 -3.5274 16 1 4.5326 -5.3008 -2.6456 17 6 4.5147 -5.2573 -4.7796 18 7 4.1378 -4.5982 -5.8534 19 14 5.4445 -6.8685 -4.9510 20 1 5.7513 -7.4088 -3.6022 21 1 4.6105 -7.8443 -5.6976 22 1 6.7111 -6.6328 -5.6893 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 3.1858 1.1177 -0.4343 27 1 1.6502 2.0043 -0.5894 28 1 2.8001 1.0026 2.0583 29 1 0.2729 2.4045 1.1963 30 1 0.5620 1.3525 2.6174 31 1 1.6435 3.1242 3.8459 32 1 0.3471 4.0176 2.9876 33 1 2.9008 4.8249 2.6874 34 1 1.8462 4.7382 1.2430 35 1 4.0769 2.8978 2.0976 36 1 3.5172 3.3084 0.4518 37 1 1.5450 -1.9078 -2.2460 38 1 3.0865 -1.0179 -2.2417 39 1 4.2550 -3.0474 -1.4253 40 1 2.7132 -3.9367 -1.4298 41 1 2.4981 -3.5500 -3.8700 42 1 4.0400 -2.6608 -3.8648 43 1 4.3429 -4.9485 -6.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068905532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:46 Heat of formation + Delta-G solvation = -125.733116 kcal Electronic energy + Delta-G solvation = -21587.917445 eV Core-core repulsion = 18372.064717 eV Total energy + Delta-G solvation = -3215.852728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61452 -38.22516 -37.06708 -36.53687 -36.44257 -34.18010 -31.04881 -29.68772 -29.44756 -27.52332 -25.66158 -24.64311 -22.34290 -21.50850 -20.63954 -19.85323 -18.64963 -18.42964 -17.63517 -17.24886 -16.71585 -16.50760 -16.01698 -15.88585 -15.21265 -14.81692 -14.53855 -14.41030 -14.11270 -14.01524 -13.68878 -13.52678 -13.29438 -13.18048 -13.02039 -12.81620 -12.77955 -12.71365 -12.61839 -12.16412 -11.93660 -11.85161 -11.82465 -11.78666 -11.69199 -11.43504 -11.39088 -11.24090 -11.07651 -10.59675 -9.90408 -8.24408 -6.35547 -0.77171 1.38769 1.39362 1.52825 1.69744 2.38699 2.80450 3.09061 3.14387 3.60119 3.73875 3.80101 3.84312 3.89704 3.96142 4.36337 4.43207 4.43853 4.59759 4.62202 4.62453 4.73356 4.75581 4.85059 4.88914 4.91953 4.95127 5.01361 5.04919 5.07936 5.13458 5.16696 5.30672 5.43022 5.43479 5.51972 5.53915 5.60262 5.71486 5.77482 6.17890 6.80020 7.33946 8.87335 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.003114 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.033229 B = 8989.214659 C = 9165.101624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.997 5.997 3 C 0.124 3.876 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.127 4.127 7 C -0.120 4.120 8 C -0.121 4.121 9 S 2.619 3.381 10 O -0.985 6.985 11 O -0.989 6.989 12 C -0.610 4.610 13 C -0.107 4.107 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 19.039 13.333 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.835 5.835 3 C -0.001 4.001 4 C -0.138 4.138 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.157 4.157 8 C -0.159 4.159 9 S 2.715 3.285 10 O -0.975 6.975 11 O -0.979 6.979 12 C -0.740 4.740 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.591 4.591 16 H 0.077 0.923 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.077 0.923 24 H 0.121 0.879 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.124 18.576 13.938 24.604 hybrid contribution 0.529 -0.946 -0.984 1.464 sum -7.595 17.631 12.954 23.159 Atomic orbital electron populations 1.21774 0.76972 1.04428 1.02877 1.57289 1.15959 1.20572 1.89718 1.21723 0.96766 0.84677 0.96938 1.22258 0.97103 0.97726 0.96710 1.22481 0.95990 0.97341 0.99495 1.22539 0.99264 0.96450 0.98191 1.22346 0.96853 0.97000 0.99527 1.22164 0.97964 0.93787 1.01977 1.04659 0.73048 0.73169 0.77672 1.93524 1.45710 1.83490 1.74769 1.93517 1.65352 1.63935 1.75126 1.30555 1.11034 1.07233 1.25197 1.21312 0.99098 0.93453 1.00709 1.18958 0.95739 0.95405 0.90557 1.21763 1.36655 1.07903 0.92757 0.92263 1.25940 0.96784 1.01275 0.95555 1.70077 1.47827 1.40704 0.98338 0.85418 0.78304 0.78961 0.78520 1.18845 1.20117 1.20128 0.92306 0.87877 0.91145 0.90362 0.87101 0.93205 0.89795 0.92875 0.92462 0.90488 0.91412 0.90476 0.92469 0.90454 0.83816 0.83820 0.91705 0.91747 0.97851 0.97840 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 8.84 127.77 1.13 2.47 16 2 N -1.00 -20.89 3.07 -539.11 -1.66 -22.55 16 3 C 0.12 2.18 4.45 86.38 0.38 2.56 16 4 C -0.12 -2.20 3.15 -10.07 -0.03 -2.23 16 5 C -0.12 -1.75 5.04 31.69 0.16 -1.59 16 6 C -0.13 -1.66 6.91 31.91 0.22 -1.44 16 7 C -0.12 -1.45 6.83 31.67 0.22 -1.24 16 8 C -0.12 -1.86 6.46 31.32 0.20 -1.66 16 9 S 2.62 77.96 5.32 -56.49 -0.30 77.66 16 10 O -0.98 -34.71 16.83 -127.65 -2.15 -36.86 16 11 O -0.99 -35.15 17.09 -127.65 -2.18 -37.33 16 12 C -0.61 -18.72 6.18 71.98 0.44 -18.28 16 13 C -0.11 -4.43 5.16 30.60 0.16 -4.27 16 14 C 0.03 1.65 4.97 29.85 0.15 1.80 16 15 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.15 5.46 84.65 0.46 0.62 16 18 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 19 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H 0.06 0.94 7.43 -2.39 -0.02 0.92 16 24 H 0.10 0.97 7.88 -2.39 -0.02 0.95 16 25 H 0.07 1.15 7.79 -2.39 -0.02 1.13 16 26 H 0.08 1.45 7.60 -2.39 -0.02 1.43 16 27 H 0.11 1.25 7.84 -2.39 -0.02 1.23 16 28 H 0.05 1.24 7.98 -2.39 -0.02 1.22 16 29 H 0.08 0.98 7.16 -2.38 -0.02 0.97 16 30 H 0.05 0.91 7.84 -2.39 -0.02 0.90 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 1.02 7.67 -2.38 -0.02 1.01 16 37 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 38 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -73.54 353.82 0.70 -72.84 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.95 Total: 10.20 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 3.73 Total: -54.81 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -1.37 Total: -78.14 kcal Atomic # 8 Polarization: -69.85 SS G_CDS: -4.33 Total: -74.18 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 77.96 SS G_CDS: -0.30 Total: 77.66 kcal Total: -73.54 0.70 -72.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068905532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.897 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds