Wall clock time and date at job start Tue Mar 31 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.47493 * 2 1 4 4 C 1.35961 * 117.00136 * 180.02562 * 3 2 1 5 5 C 1.38731 * 119.98308 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.00832 * 180.02562 * 5 4 3 7 7 C 1.38846 * 119.99376 * 359.97438 * 6 5 4 8 8 N 1.40109 * 120.01759 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99985 * 303.09092 * 8 7 6 10 10 C 1.50697 * 109.47100 * 269.99675 * 9 8 7 11 11 H 1.08004 * 119.99892 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00026 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47280 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47229 * 120.00195 * 14 12 10 17 17 H 1.48495 * 109.47259 * 240.00378 * 14 12 10 18 18 C 1.34783 * 119.99846 * 123.09393 * 8 7 6 19 19 O 1.21295 * 120.00019 * 354.33076 * 18 8 7 20 20 C 1.50696 * 119.99862 * 174.33841 * 18 8 7 21 21 C 1.53003 * 117.49308 * 248.74230 * 20 18 8 22 22 C 1.53000 * 117.49563 * 180.08423 * 20 18 8 23 23 C 1.38847 * 119.96438 * 0.27308 * 7 6 5 24 24 C 1.38087 * 119.98501 * 359.45111 * 23 7 6 25 25 H 1.08994 * 109.46990 * 60.00032 * 1 2 3 26 26 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46586 * 299.99992 * 1 2 3 28 28 H 1.09003 * 109.46613 * 239.99456 * 2 1 3 29 29 H 1.09002 * 109.46895 * 120.00296 * 2 1 3 30 30 H 1.07988 * 119.99479 * 359.97438 * 5 4 3 31 31 H 1.08009 * 120.00131 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47036 * 30.00098 * 9 8 7 33 33 H 1.09005 * 109.46799 * 150.00430 * 9 8 7 34 34 H 0.96999 * 120.00237 * 179.97438 * 13 12 10 35 35 H 1.08998 * 115.55342 * 34.40844 * 20 18 8 36 36 H 1.08996 * 117.50233 * 0.02562 * 21 20 18 37 37 H 1.09007 * 117.49896 * 145.02260 * 21 20 18 38 38 H 1.09000 * 117.49841 * 214.97300 * 22 20 18 39 39 H 1.08996 * 117.50367 * 359.97438 * 22 20 18 40 40 H 1.08004 * 120.00672 * 179.70333 * 23 7 6 41 41 H 1.08000 * 119.99139 * 180.27197 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8843 2.8074 0.0000 6 6 5.2532 2.9889 -0.0011 7 6 6.0993 1.8880 -0.0022 8 7 7.4883 2.0715 -0.0027 9 6 8.1232 2.8548 -1.0655 10 6 8.4966 1.9438 -2.2064 11 1 8.2819 0.8870 -2.1460 12 6 9.1112 2.4595 -3.3276 13 7 9.3721 3.7463 -3.4014 14 14 9.5733 1.3302 -4.7421 15 1 9.1746 -0.0623 -4.4146 16 1 8.8714 1.7686 -5.9752 17 1 11.0409 1.3867 -4.9614 18 6 8.2404 1.5274 0.9745 19 8 7.7075 0.9669 1.9090 20 6 9.7432 1.6155 0.9062 21 6 10.5165 0.3178 0.6634 22 6 10.5407 0.9766 2.0449 23 6 5.5682 0.6051 -0.0079 24 6 4.1991 0.4250 -0.0010 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.2262 3.6635 0.0004 31 1 5.6657 3.9871 -0.0011 32 1 7.4284 3.6158 -1.4206 33 1 9.0206 3.3355 -0.6759 34 1 9.8048 4.1090 -4.1901 35 1 10.1410 2.5287 0.4637 36 1 9.9382 -0.5995 0.5526 37 1 11.4234 0.3774 0.0614 38 1 11.4635 1.4693 2.3513 39 1 9.9785 0.4929 2.8436 40 1 6.2257 -0.2517 -0.0135 41 1 3.7859 -0.5729 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072595600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:04 Heat of formation + Delta-G solvation = -21.544148 kcal Electronic energy + Delta-G solvation = -22839.159575 eV Core-core repulsion = 19492.380868 eV Total energy + Delta-G solvation = -3346.778706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18921 -39.31901 -37.34576 -35.47581 -34.81018 -32.62237 -31.75311 -30.60578 -28.78185 -27.01995 -24.37406 -23.97125 -22.91205 -22.04747 -21.86068 -20.91341 -18.46192 -18.04913 -17.00629 -16.64901 -16.12915 -16.01626 -15.60204 -14.65852 -14.43161 -14.20558 -13.95896 -13.66014 -13.36244 -13.24247 -13.08331 -12.66723 -12.44225 -12.15327 -11.92693 -11.81563 -11.63137 -11.48844 -11.16669 -11.01631 -10.85339 -10.69853 -10.54510 -10.23249 -10.06064 -9.95377 -9.81753 -9.19676 -8.63245 -8.57200 -8.43444 -7.27213 -6.19795 -4.26220 1.71366 1.78630 3.13748 3.20581 3.29388 3.32529 3.33912 3.72122 4.14593 4.32715 4.42640 4.84631 4.89064 5.11316 5.13695 5.16247 5.20676 5.25859 5.31609 5.41078 5.42012 5.67367 5.69990 5.71760 5.74758 5.90167 5.96320 5.98956 6.19510 6.24707 6.36126 6.45003 6.50614 6.65732 6.79382 6.89390 7.02991 7.14916 7.51730 7.70496 7.76718 8.01521 8.18471 8.76000 8.93727 9.40616 10.87132 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.005064 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.251009 B = 5528.360051 C = 6761.670155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.107 3.893 5 C -0.138 4.138 6 C -0.090 4.090 7 C 0.144 3.856 8 N -0.551 5.551 9 C 0.238 3.762 10 C -0.530 4.530 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.549 3.451 19 O -0.561 6.561 20 C -0.170 4.170 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.072 4.072 24 C -0.195 4.195 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 -4.930 6.221 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.062 3.938 5 C -0.158 4.158 6 C -0.110 4.110 7 C 0.052 3.948 8 N -0.277 5.277 9 C 0.119 3.881 10 C -0.568 4.568 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.208 1.208 18 C 0.339 3.661 19 O -0.440 6.440 20 C -0.191 4.191 21 C -0.179 4.179 22 C -0.200 4.200 23 C -0.092 4.092 24 C -0.214 4.214 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.491 -4.916 6.566 11.805 hybrid contribution 0.470 -0.675 -1.196 1.451 sum -8.021 -5.591 5.370 11.155 Atomic orbital electron populations 1.21762 0.93103 1.02553 1.03352 1.22708 0.95485 0.82578 1.01341 1.86025 1.19411 1.28678 1.89351 1.18846 0.81776 0.94132 0.98998 1.20144 0.94426 0.94602 1.06594 1.20940 0.91976 0.98724 0.99346 1.17533 0.83828 0.92728 1.00681 1.45887 1.03500 1.51951 1.26318 1.19616 0.93574 0.90965 0.83896 1.21430 1.39438 0.94924 1.01025 0.92050 1.24897 0.95407 0.95111 0.98280 1.69919 1.42062 1.11589 1.29519 0.86467 0.78188 0.80961 0.82047 1.19674 1.20862 1.20798 1.19680 0.88217 0.77280 0.80960 1.90615 1.74382 1.45026 1.34022 1.22082 0.91023 1.00544 1.05446 1.22763 1.01503 0.95042 0.98597 1.22951 1.01079 1.03642 0.92344 1.20889 0.94173 0.96615 0.97521 1.20974 0.93687 0.97707 1.09049 0.91607 0.90647 0.91670 0.92176 0.92250 0.85303 0.85098 0.94237 0.93870 0.92559 0.85249 0.88922 0.88046 0.88539 0.88091 0.86112 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.60 5.46 37.16 0.20 0.80 16 3 O -0.32 -4.71 10.14 -19.62 -0.20 -4.91 16 4 C 0.11 1.77 6.69 -39.22 -0.26 1.51 16 5 C -0.14 -2.32 9.98 -39.45 -0.39 -2.71 16 6 C -0.09 -1.68 9.31 -39.41 -0.37 -2.04 16 7 C 0.14 3.00 5.15 -83.62 -0.43 2.57 16 8 N -0.55 -12.07 2.56 -114.70 -0.29 -12.36 16 9 C 0.24 5.66 4.84 -5.20 -0.03 5.63 16 10 C -0.53 -13.71 9.38 -34.44 -0.32 -14.03 16 11 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 14 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.55 11.73 7.24 -10.98 -0.08 11.65 16 19 O -0.56 -12.86 15.66 5.54 0.09 -12.77 16 20 C -0.17 -3.16 5.35 -91.77 -0.49 -3.65 16 21 C -0.14 -2.32 10.24 -26.69 -0.27 -2.59 16 22 C -0.16 -2.50 10.05 -26.69 -0.27 -2.76 16 23 C -0.07 -1.40 8.97 -39.41 -0.35 -1.76 16 24 C -0.19 -3.26 9.03 -39.46 -0.36 -3.62 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.13 2.28 7.83 -52.48 -0.41 1.87 16 32 H 0.04 0.99 7.36 -51.93 -0.38 0.61 16 33 H 0.04 1.04 6.11 -51.93 -0.32 0.72 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 35 H 0.13 2.44 6.41 -51.93 -0.33 2.11 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.61 7.67 -51.93 -0.40 1.21 16 40 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 41 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -29.74 347.99 -8.48 -38.21 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.89 Total: 4.95 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -3.14 Total: -10.26 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.44 Total: -35.95 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.11 Total: -17.68 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.74 -8.48 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072595600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.667 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds