Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.47493 * 2 1 4 4 C 1.35961 * 117.00136 * 180.02562 * 3 2 1 5 5 C 1.38731 * 119.98308 * 180.02562 * 4 3 2 6 6 C 1.38087 * 120.00832 * 180.02562 * 5 4 3 7 7 C 1.38846 * 119.99376 * 359.97438 * 6 5 4 8 8 N 1.40109 * 120.01759 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99985 * 303.09092 * 8 7 6 10 10 C 1.50697 * 109.47100 * 269.99675 * 9 8 7 11 11 H 1.08004 * 119.99892 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00327 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00026 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47280 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47229 * 120.00195 * 14 12 10 17 17 H 1.48495 * 109.47259 * 240.00378 * 14 12 10 18 18 C 1.34783 * 119.99846 * 123.09393 * 8 7 6 19 19 O 1.21295 * 120.00019 * 354.33076 * 18 8 7 20 20 C 1.50696 * 119.99862 * 174.33841 * 18 8 7 21 21 C 1.53003 * 117.49308 * 248.74230 * 20 18 8 22 22 C 1.53000 * 117.49563 * 180.08423 * 20 18 8 23 23 C 1.38847 * 119.96438 * 0.27308 * 7 6 5 24 24 C 1.38087 * 119.98501 * 359.45111 * 23 7 6 25 25 H 1.08994 * 109.46990 * 60.00032 * 1 2 3 26 26 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46586 * 299.99992 * 1 2 3 28 28 H 1.09003 * 109.46613 * 239.99456 * 2 1 3 29 29 H 1.09002 * 109.46895 * 120.00296 * 2 1 3 30 30 H 1.07988 * 119.99479 * 359.97438 * 5 4 3 31 31 H 1.08009 * 120.00131 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47036 * 30.00098 * 9 8 7 33 33 H 1.09005 * 109.46799 * 150.00430 * 9 8 7 34 34 H 0.96999 * 120.00237 * 179.97438 * 13 12 10 35 35 H 1.08998 * 115.55342 * 34.40844 * 20 18 8 36 36 H 1.08996 * 117.50233 * 0.02562 * 21 20 18 37 37 H 1.09007 * 117.49896 * 145.02260 * 21 20 18 38 38 H 1.09000 * 117.49841 * 214.97300 * 22 20 18 39 39 H 1.08996 * 117.50367 * 359.97438 * 22 20 18 40 40 H 1.08004 * 120.00672 * 179.70333 * 23 7 6 41 41 H 1.08000 * 119.99139 * 180.27197 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3544 1.5253 -0.0005 5 6 3.8843 2.8074 0.0000 6 6 5.2532 2.9889 -0.0011 7 6 6.0993 1.8880 -0.0022 8 7 7.4883 2.0715 -0.0027 9 6 8.1232 2.8548 -1.0655 10 6 8.4966 1.9438 -2.2064 11 1 8.2819 0.8870 -2.1460 12 6 9.1112 2.4595 -3.3276 13 7 9.3721 3.7463 -3.4014 14 14 9.5733 1.3302 -4.7421 15 1 9.1746 -0.0623 -4.4146 16 1 8.8714 1.7686 -5.9752 17 1 11.0409 1.3867 -4.9614 18 6 8.2404 1.5274 0.9745 19 8 7.7075 0.9669 1.9090 20 6 9.7432 1.6155 0.9062 21 6 10.5165 0.3178 0.6634 22 6 10.5407 0.9766 2.0449 23 6 5.5682 0.6051 -0.0079 24 6 4.1991 0.4250 -0.0010 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.2262 3.6635 0.0004 31 1 5.6657 3.9871 -0.0011 32 1 7.4284 3.6158 -1.4206 33 1 9.0206 3.3355 -0.6759 34 1 9.8048 4.1090 -4.1901 35 1 10.1410 2.5287 0.4637 36 1 9.9382 -0.5995 0.5526 37 1 11.4234 0.3774 0.0614 38 1 11.4635 1.4693 2.3513 39 1 9.9785 0.4929 2.8436 40 1 6.2257 -0.2517 -0.0135 41 1 3.7859 -0.5729 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072595600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = -36.538834 kcal Electronic energy + Delta-G solvation = -22839.809793 eV Core-core repulsion = 19492.380868 eV Total energy + Delta-G solvation = -3347.428925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67216 -40.68700 -38.69794 -36.88364 -36.51320 -34.53362 -32.74614 -31.93645 -30.28803 -28.83154 -25.81061 -25.35264 -24.50404 -23.37227 -23.14548 -22.20751 -20.02254 -19.29098 -18.67619 -18.46432 -17.80371 -17.02785 -16.98295 -16.44668 -15.84421 -15.66406 -15.47731 -15.12986 -14.64278 -14.42450 -14.32443 -14.25410 -13.75234 -13.63265 -13.35662 -13.20152 -12.95007 -12.87549 -12.66406 -12.62550 -12.38608 -12.13343 -11.95016 -11.69505 -11.61886 -11.42555 -11.32839 -10.87515 -10.57743 -10.07506 -10.00984 -8.79667 -8.19622 -6.34174 0.30490 0.34819 1.39207 1.42161 1.51517 1.56506 2.10504 2.27362 2.41580 2.72970 3.03452 3.10093 3.67187 3.80039 3.87076 3.92495 4.07403 4.10814 4.17073 4.27043 4.27571 4.35652 4.39111 4.55577 4.64502 4.74459 4.88098 4.92403 4.96506 4.98444 5.01393 5.10197 5.17869 5.20001 5.26386 5.31527 5.46676 5.57200 5.68992 5.96710 6.03236 6.43018 6.46856 6.76127 7.23810 7.37800 8.85430 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.005064 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.251009 B = 5528.360051 C = 6761.670155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.114 3.886 5 C -0.138 4.138 6 C -0.100 4.100 7 C 0.104 3.896 8 N -0.553 5.553 9 C 0.254 3.746 10 C -0.536 4.536 11 H 0.049 0.951 12 C 0.025 3.975 13 N -0.920 5.920 14 Si 0.955 3.045 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.273 1.273 18 C 0.542 3.458 19 O -0.583 6.583 20 C -0.199 4.199 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.088 4.088 24 C -0.190 4.190 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.133 0.867 32 H 0.022 0.978 33 H 0.037 0.963 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -6.004 6.101 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 O -0.240 6.240 4 C 0.068 3.932 5 C -0.157 4.157 6 C -0.119 4.119 7 C 0.013 3.987 8 N -0.278 5.278 9 C 0.135 3.865 10 C -0.574 4.574 11 H 0.067 0.933 12 C -0.176 4.176 13 N -0.559 5.559 14 Si 0.780 3.220 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.198 1.198 18 C 0.334 3.666 19 O -0.465 6.465 20 C -0.220 4.220 21 C -0.175 4.175 22 C -0.171 4.171 23 C -0.108 4.108 24 C -0.209 4.209 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.197 -5.997 6.450 12.734 hybrid contribution 0.533 -0.369 -1.124 1.298 sum -8.664 -6.366 5.326 11.998 Atomic orbital electron populations 1.21792 0.90952 1.04218 1.03324 1.23099 0.97233 0.80915 1.02127 1.86047 1.17915 1.31186 1.88809 1.18942 0.82810 0.93905 0.97508 1.20415 0.93901 0.95890 1.05464 1.21058 0.92816 0.98366 0.99690 1.17908 0.83572 0.94020 1.03215 1.45826 1.04303 1.51807 1.25900 1.19255 0.92852 0.90435 0.83994 1.21534 1.39481 0.94496 1.01928 0.93284 1.25574 0.95284 0.96326 1.00366 1.70002 1.42677 1.12905 1.30317 0.85549 0.78248 0.79071 0.79084 1.19686 1.20658 1.19806 1.20169 0.89379 0.76692 0.80397 1.90577 1.75102 1.46132 1.34646 1.22094 0.89516 1.01478 1.08935 1.22872 1.01342 0.93453 0.99829 1.23048 1.01102 1.01750 0.91220 1.20919 0.95374 0.95780 0.98735 1.21212 0.92513 0.99369 1.07824 0.91726 0.88135 0.91618 0.91461 0.91351 0.82833 0.84871 0.95984 0.94466 0.92275 0.85919 0.89638 0.86324 0.85297 0.88642 0.87268 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.32 -8.89 10.14 -93.12 -0.94 -9.84 16 4 C 0.11 3.62 6.69 22.50 0.15 3.77 16 5 C -0.14 -4.51 9.98 22.35 0.22 -4.29 16 6 C -0.10 -3.78 9.31 22.38 0.21 -3.58 16 7 C 0.10 4.47 5.15 38.11 0.20 4.67 16 8 N -0.55 -25.17 2.56 -635.18 -1.63 -26.79 16 9 C 0.25 12.53 4.84 85.63 0.41 12.95 16 10 C -0.54 -28.30 9.38 25.60 0.24 -28.06 16 11 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 12 C 0.02 1.30 5.46 84.65 0.46 1.76 16 13 N -0.92 -50.50 13.29 21.45 0.28 -50.21 16 14 Si 0.95 41.93 29.54 68.60 2.03 43.96 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 C 0.54 23.89 7.24 87.65 0.63 24.52 16 19 O -0.58 -27.43 15.66 -3.08 -0.05 -27.48 16 20 C -0.20 -7.48 5.35 -11.54 -0.06 -7.54 16 21 C -0.14 -4.40 10.24 30.62 0.31 -4.09 16 22 C -0.13 -3.93 10.05 30.62 0.31 -3.62 16 23 C -0.09 -3.50 8.97 22.38 0.20 -3.30 16 24 C -0.19 -6.20 9.03 22.35 0.20 -6.00 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 29 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 30 H 0.15 4.16 8.06 -2.92 -0.02 4.14 16 31 H 0.13 4.83 7.83 -2.91 -0.02 4.81 16 32 H 0.02 1.15 7.36 -2.39 -0.02 1.14 16 33 H 0.04 1.87 6.11 -2.38 -0.01 1.85 16 34 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.12 4.73 6.41 -2.39 -0.02 4.71 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.12 3.36 8.14 -2.38 -0.02 3.34 16 38 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.10 2.94 7.67 -2.39 -0.02 2.92 16 40 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.15 3.94 6.29 -2.91 -0.02 3.92 16 Total: -1.00 -64.13 347.99 5.34 -58.79 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 1.02 Total: 24.49 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.63 Total: -12.91 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.34 Total: -77.01 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.99 Total: -37.32 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -64.13 5.34 -58.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072595600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.251 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds