Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00142 * 2 1 4 4 C 1.50696 * 109.47544 * 269.99891 * 3 2 1 5 5 H 1.08012 * 119.99480 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00698 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99635 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00014 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47548 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47051 * 119.99991 * 8 6 4 11 11 H 1.48503 * 109.47053 * 239.99693 * 8 6 4 12 12 C 1.34779 * 119.99881 * 179.97438 * 2 1 3 13 13 O 1.21582 * 120.00110 * 184.49073 * 12 2 1 14 14 C 1.47597 * 119.99998 * 4.48765 * 12 2 1 15 15 C 1.39733 * 120.09167 * 317.96010 * 14 12 2 16 16 C 1.37705 * 119.91546 * 179.72001 * 15 14 12 17 17 C 1.39000 * 120.08535 * 0.27898 * 16 15 14 18 18 O 1.35710 * 119.91153 * 180.02562 * 17 16 15 19 19 C 1.42902 * 117.00068 * 5.83197 * 18 17 16 20 20 C 1.53774 * 113.61742 * 254.11867 * 19 18 17 21 21 C 1.53959 * 87.01932 * 220.04835 * 20 19 18 22 22 C 1.53783 * 87.11204 * 25.36135 * 21 20 19 23 23 C 1.38997 * 120.17675 * 0.02562 * 17 16 15 24 24 C 1.37700 * 120.08854 * 359.96315 * 23 17 16 25 25 H 1.08994 * 109.47019 * 271.35499 * 1 2 3 26 26 H 1.09001 * 109.46968 * 31.36015 * 1 2 3 27 27 H 1.09005 * 109.47219 * 151.35268 * 1 2 3 28 28 H 1.09004 * 109.47094 * 30.00133 * 3 2 1 29 29 H 1.08998 * 109.47403 * 149.99779 * 3 2 1 30 30 H 0.96992 * 119.99614 * 180.02562 * 7 6 4 31 31 H 1.08006 * 120.04097 * 359.97438 * 15 14 12 32 32 H 1.07993 * 119.95577 * 180.30102 * 16 15 14 33 33 H 1.09001 * 112.84577 * 25.31331 * 19 18 17 34 34 H 1.09004 * 113.61215 * 334.55856 * 20 19 18 35 35 H 1.08998 * 113.61689 * 105.46881 * 20 19 18 36 36 H 1.09003 * 113.53590 * 270.81377 * 21 20 19 37 37 H 1.08998 * 113.66871 * 139.92950 * 21 20 19 38 38 H 1.08998 * 113.61418 * 220.09881 * 22 21 20 39 39 H 1.08999 * 113.69315 * 89.19620 * 22 21 20 40 40 H 1.07999 * 119.95634 * 179.97438 * 23 17 16 41 41 H 1.08002 * 120.04570 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5544 3.6175 -0.6731 8 14 3.4390 3.4162 -3.4339 9 1 2.8619 2.4157 -4.3673 10 1 2.8020 4.7371 -3.6677 11 1 4.9017 3.5239 -3.6669 12 6 2.1389 -1.1672 0.0005 13 8 3.3519 -1.1689 0.0830 14 6 1.4043 -2.4435 -0.0989 15 6 0.2243 -2.6310 0.6257 16 6 -0.4612 -3.8211 0.5257 17 6 0.0222 -4.8373 -0.2902 18 8 -0.6565 -6.0086 -0.3864 19 6 -1.9216 -6.0815 0.2742 20 6 -1.8971 -6.9236 1.5607 21 6 -3.2710 -7.4711 1.1327 22 6 -2.8632 -7.1457 -0.3139 23 6 1.1990 -4.6571 -1.0077 24 6 1.8902 -3.4699 -0.9133 25 1 -0.3633 0.0243 1.0273 26 1 -0.3633 0.8775 -0.5348 27 1 -0.3634 -0.9019 -0.4927 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5138 30 1 4.0312 4.4433 -0.8504 31 1 -0.1517 -1.8420 1.2602 32 1 -1.3758 -3.9649 1.0817 33 1 -2.3902 -5.1054 0.4001 34 1 -1.1110 -7.6786 1.5734 35 1 -1.9283 -6.3280 2.4730 36 1 -4.1089 -6.8753 1.4947 37 1 -3.3953 -8.5373 1.3219 38 1 -3.6731 -6.7290 -0.9126 39 1 -2.3417 -7.9606 -0.8158 40 1 1.5716 -5.4493 -1.6402 41 1 2.8042 -3.3305 -1.4714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = -16.631263 kcal Electronic energy + Delta-G solvation = -22303.468277 eV Core-core repulsion = 18956.902609 eV Total energy + Delta-G solvation = -3346.565668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65392 -39.42921 -37.94143 -36.15270 -34.86799 -32.65639 -31.09609 -30.15427 -27.67621 -26.13780 -26.02224 -25.68445 -23.54556 -22.71400 -21.88128 -19.94319 -19.05084 -18.51456 -16.67160 -16.53296 -16.42218 -15.86295 -15.27992 -15.16149 -14.65367 -14.46195 -14.30166 -14.16791 -13.41330 -13.28114 -12.89467 -12.85117 -12.44614 -12.26769 -12.19204 -12.15069 -11.79930 -11.69890 -11.41794 -11.17298 -10.97542 -10.87190 -10.63829 -10.61216 -10.49923 -10.15813 -9.61169 -9.01304 -8.99664 -8.43665 -8.13081 -7.63596 -6.04070 -4.08899 1.19631 1.36993 3.02643 3.30355 3.33892 3.38300 3.42923 3.82807 4.08580 4.12621 4.16770 4.38765 4.39029 4.45391 4.71446 4.82521 4.96705 5.10228 5.24674 5.30570 5.32518 5.33171 5.41456 5.46628 5.50444 5.58087 5.69192 5.70638 5.86516 5.88621 6.02461 6.20342 6.23992 6.27078 6.54146 6.70638 7.07679 7.32859 7.45298 7.54038 7.92705 8.23439 8.40127 8.89891 9.07959 9.56285 11.04088 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033262 B = 0.003027 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.586991 B = 9246.783453 C = 9330.932309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.243 3.757 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.549 3.451 13 O -0.539 6.539 14 C -0.152 4.152 15 C -0.053 4.053 16 C -0.219 4.219 17 C 0.139 3.861 18 O -0.302 6.302 19 C 0.052 3.948 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.160 4.160 24 C -0.030 4.030 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 -20.052 3.337 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.326 5.326 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.336 3.664 13 O -0.417 6.417 14 C -0.155 4.155 15 C -0.072 4.072 16 C -0.237 4.237 17 C 0.094 3.906 18 O -0.216 6.216 19 C -0.004 4.004 20 C -0.194 4.194 21 C -0.178 4.178 22 C -0.169 4.169 23 C -0.179 4.179 24 C -0.049 4.049 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.151 0.849 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.697 -20.013 3.327 25.052 hybrid contribution -0.022 0.605 -0.815 1.016 sum -14.719 -19.408 2.512 24.487 Atomic orbital electron populations 1.21929 0.81647 1.02919 1.00177 1.48066 1.06168 1.07642 1.70744 1.19337 0.92707 0.77865 0.97640 1.21480 1.36464 1.06328 0.92271 0.92354 1.24945 0.95334 0.96376 0.97498 1.69945 1.38400 1.14335 1.30677 0.86431 0.78096 0.78304 0.84534 1.19768 1.20951 1.20842 1.18107 0.87156 0.83324 0.77827 1.90755 1.13548 1.87139 1.50262 1.20141 0.97176 0.96239 1.01972 1.21340 0.92660 0.96476 0.96701 1.21105 1.03129 0.94919 1.04568 1.19182 0.92191 0.84952 0.94282 1.86113 1.32031 1.32247 1.71161 1.24237 0.83130 0.99325 0.93748 1.23540 0.98148 1.00150 0.97579 1.22689 0.97052 1.01998 0.96075 1.23189 0.97922 0.98573 0.97262 1.20346 0.95240 0.98959 1.03320 1.21043 0.98130 0.90539 0.95141 0.93653 0.90863 0.91668 0.94843 0.93570 0.92750 0.84707 0.85229 0.88029 0.88935 0.90755 0.89685 0.90390 0.90491 0.88856 0.84919 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 8.93 59.85 0.53 1.80 16 2 N -0.60 -13.11 2.86 -184.18 -0.53 -13.63 16 3 C 0.24 6.50 5.20 -5.20 -0.03 6.47 16 4 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.55 12.18 7.31 -12.44 -0.09 12.09 16 13 O -0.54 -14.24 16.50 5.29 0.09 -14.15 16 14 C -0.15 -2.63 5.15 -104.96 -0.54 -3.17 16 15 C -0.05 -0.74 7.48 -39.22 -0.29 -1.03 16 16 C -0.22 -2.61 8.99 -39.49 -0.36 -2.96 16 17 C 0.14 1.77 6.69 -39.02 -0.26 1.51 16 18 O -0.30 -3.46 10.14 -18.84 -0.19 -3.65 16 19 C 0.05 0.43 3.67 -25.92 -0.10 0.34 16 20 C -0.16 -1.10 7.93 -25.83 -0.20 -1.30 16 21 C -0.14 -0.76 8.09 -25.82 -0.21 -0.97 16 22 C -0.13 -0.87 7.92 -25.92 -0.21 -1.07 16 23 C -0.16 -2.15 9.97 -39.50 -0.39 -2.54 16 24 C -0.03 -0.47 9.64 -39.22 -0.38 -0.85 16 25 H 0.05 0.62 7.28 -51.93 -0.38 0.24 16 26 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 27 H 0.06 0.95 5.50 -51.93 -0.29 0.66 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.14 1.68 5.77 -52.48 -0.30 1.38 16 32 H 0.13 1.19 5.90 -52.49 -0.31 0.88 16 33 H 0.10 0.76 5.94 -51.93 -0.31 0.45 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -33.95 340.44 -8.46 -42.40 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.73 Total: -1.54 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.94 Total: -5.52 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.21 Total: -39.70 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.10 Total: -17.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.95 -8.46 -42.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.771 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds