Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00142 * 2 1 4 4 C 1.50696 * 109.47544 * 269.99891 * 3 2 1 5 5 H 1.08012 * 119.99480 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00698 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99635 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00014 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47548 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47051 * 119.99991 * 8 6 4 11 11 H 1.48503 * 109.47053 * 239.99693 * 8 6 4 12 12 C 1.34779 * 119.99881 * 179.97438 * 2 1 3 13 13 O 1.21582 * 120.00110 * 184.49073 * 12 2 1 14 14 C 1.47597 * 119.99998 * 4.48765 * 12 2 1 15 15 C 1.39733 * 120.09167 * 317.96010 * 14 12 2 16 16 C 1.37705 * 119.91546 * 179.72001 * 15 14 12 17 17 C 1.39000 * 120.08535 * 0.27898 * 16 15 14 18 18 O 1.35710 * 119.91153 * 180.02562 * 17 16 15 19 19 C 1.42902 * 117.00068 * 5.83197 * 18 17 16 20 20 C 1.53774 * 113.61742 * 254.11867 * 19 18 17 21 21 C 1.53959 * 87.01932 * 220.04835 * 20 19 18 22 22 C 1.53783 * 87.11204 * 25.36135 * 21 20 19 23 23 C 1.38997 * 120.17675 * 0.02562 * 17 16 15 24 24 C 1.37700 * 120.08854 * 359.96315 * 23 17 16 25 25 H 1.08994 * 109.47019 * 271.35499 * 1 2 3 26 26 H 1.09001 * 109.46968 * 31.36015 * 1 2 3 27 27 H 1.09005 * 109.47219 * 151.35268 * 1 2 3 28 28 H 1.09004 * 109.47094 * 30.00133 * 3 2 1 29 29 H 1.08998 * 109.47403 * 149.99779 * 3 2 1 30 30 H 0.96992 * 119.99614 * 180.02562 * 7 6 4 31 31 H 1.08006 * 120.04097 * 359.97438 * 15 14 12 32 32 H 1.07993 * 119.95577 * 180.30102 * 16 15 14 33 33 H 1.09001 * 112.84577 * 25.31331 * 19 18 17 34 34 H 1.09004 * 113.61215 * 334.55856 * 20 19 18 35 35 H 1.08998 * 113.61689 * 105.46881 * 20 19 18 36 36 H 1.09003 * 113.53590 * 270.81377 * 21 20 19 37 37 H 1.08998 * 113.66871 * 139.92950 * 21 20 19 38 38 H 1.08998 * 113.61418 * 220.09881 * 22 21 20 39 39 H 1.08999 * 113.69315 * 89.19620 * 22 21 20 40 40 H 1.07999 * 119.95634 * 179.97438 * 23 17 16 41 41 H 1.08002 * 120.04570 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0982 1.0957 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5544 3.6175 -0.6731 8 14 3.4390 3.4162 -3.4339 9 1 2.8619 2.4157 -4.3673 10 1 2.8020 4.7371 -3.6677 11 1 4.9017 3.5239 -3.6669 12 6 2.1389 -1.1672 0.0005 13 8 3.3519 -1.1689 0.0830 14 6 1.4043 -2.4435 -0.0989 15 6 0.2243 -2.6310 0.6257 16 6 -0.4612 -3.8211 0.5257 17 6 0.0222 -4.8373 -0.2902 18 8 -0.6565 -6.0086 -0.3864 19 6 -1.9216 -6.0815 0.2742 20 6 -1.8971 -6.9236 1.5607 21 6 -3.2710 -7.4711 1.1327 22 6 -2.8632 -7.1457 -0.3139 23 6 1.1990 -4.6571 -1.0077 24 6 1.8902 -3.4699 -0.9133 25 1 -0.3633 0.0243 1.0273 26 1 -0.3633 0.8775 -0.5348 27 1 -0.3634 -0.9019 -0.4927 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1383 0.5138 30 1 4.0312 4.4433 -0.8504 31 1 -0.1517 -1.8420 1.2602 32 1 -1.3758 -3.9649 1.0817 33 1 -2.3902 -5.1054 0.4001 34 1 -1.1110 -7.6786 1.5734 35 1 -1.9283 -6.3280 2.4730 36 1 -4.1089 -6.8753 1.4947 37 1 -3.3953 -8.5373 1.3219 38 1 -3.6731 -6.7290 -0.9126 39 1 -2.3417 -7.9606 -0.8158 40 1 1.5716 -5.4493 -1.6402 41 1 2.8042 -3.3305 -1.4714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729474.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = -37.415623 kcal Electronic energy + Delta-G solvation = -22304.369554 eV Core-core repulsion = 18956.902609 eV Total energy + Delta-G solvation = -3347.466945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64132 -40.73852 -38.99886 -37.09208 -36.69603 -34.76836 -32.24623 -31.44717 -29.50950 -27.54423 -26.60865 -26.55495 -25.27808 -23.79925 -23.19811 -20.76101 -20.33629 -19.43260 -18.71572 -18.18616 -17.55129 -16.95894 -16.53190 -16.27533 -16.09032 -15.88995 -15.47437 -15.28358 -14.81396 -14.47869 -14.31385 -13.89979 -13.59003 -13.49070 -13.43237 -13.37453 -13.22784 -13.01726 -12.81499 -12.58038 -12.34840 -12.24454 -12.10639 -11.81276 -11.70340 -11.29264 -11.16830 -10.76785 -10.66669 -10.07710 -9.51012 -9.18659 -8.24579 -6.39798 0.01568 0.30497 1.35493 1.38129 1.50166 1.82214 2.18663 2.29908 2.42436 2.76470 3.04859 3.55538 3.61646 3.66963 3.75391 3.80730 3.90936 3.97020 4.17479 4.29962 4.39351 4.52141 4.58125 4.62864 4.81594 4.82650 4.87643 4.94590 4.97424 5.03406 5.06612 5.11276 5.11756 5.19966 5.25050 5.41250 5.42681 5.52949 5.64601 5.80766 6.03098 6.43986 6.65490 6.71460 7.23447 7.39439 8.82947 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033262 B = 0.003027 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.586991 B = 9246.783453 C = 9330.932309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.542 3.458 13 O -0.599 6.599 14 C -0.180 4.180 15 C -0.044 4.044 16 C -0.206 4.206 17 C 0.150 3.850 18 O -0.309 6.309 19 C 0.035 3.965 20 C -0.159 4.159 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.041 4.041 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.600 -21.558 2.993 28.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.191 1.191 11 H -0.206 1.206 12 C 0.332 3.668 13 O -0.482 6.482 14 C -0.183 4.183 15 C -0.063 4.063 16 C -0.224 4.224 17 C 0.104 3.896 18 O -0.223 6.223 19 C -0.020 4.020 20 C -0.197 4.197 21 C -0.168 4.168 22 C -0.169 4.169 23 C -0.180 4.180 24 C -0.060 4.060 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.884 -21.540 2.990 28.156 hybrid contribution 0.857 0.929 -0.650 1.422 sum -17.026 -20.611 2.340 26.836 Atomic orbital electron populations 1.22235 0.78028 1.03950 1.02669 1.48071 1.08437 1.06143 1.70477 1.18833 0.91275 0.80001 0.96300 1.21713 1.37072 1.06695 0.92873 0.93013 1.25878 0.94759 0.96321 1.02176 1.70057 1.38802 1.14817 1.33019 0.85333 0.77941 0.78449 0.78875 1.19212 1.19143 1.20647 1.18913 0.86786 0.84834 0.76261 1.90700 1.16358 1.88171 1.52975 1.19784 0.99052 0.94181 1.05276 1.21455 0.91175 0.97792 0.95839 1.21400 1.03742 0.93432 1.03832 1.19297 0.91640 0.85517 0.93182 1.86138 1.33341 1.31387 1.71418 1.24704 0.82015 1.00683 0.94621 1.23558 0.98932 0.99907 0.97255 1.22695 0.96521 1.02748 0.94810 1.23226 0.97675 0.97845 0.98180 1.20440 0.95553 0.98287 1.03707 1.20978 0.98181 0.91372 0.95482 0.90219 0.91316 0.89220 0.95235 0.98197 0.92282 0.83013 0.81609 0.86619 0.89868 0.89998 0.88213 0.89643 0.89448 0.89427 0.83265 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.31 8.93 127.77 1.14 3.45 16 2 N -0.60 -27.21 2.86 -854.87 -2.44 -29.66 16 3 C 0.26 14.39 5.20 85.63 0.45 14.83 16 4 C -0.55 -32.36 9.39 25.60 0.24 -32.12 16 5 H 0.05 3.06 7.81 -2.90 -0.02 3.04 16 6 C 0.01 0.45 5.46 84.65 0.46 0.92 16 7 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.70 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.54 25.09 7.31 86.71 0.63 25.73 16 13 O -0.60 -33.93 16.50 -3.97 -0.07 -33.99 16 14 C -0.18 -6.24 5.15 -20.08 -0.10 -6.34 16 15 C -0.04 -1.13 7.48 22.51 0.17 -0.96 16 16 C -0.21 -4.16 8.99 22.33 0.20 -3.96 16 17 C 0.15 3.39 6.69 22.63 0.15 3.54 16 18 O -0.31 -6.16 10.14 -90.31 -0.92 -7.07 16 19 C 0.04 0.46 3.67 31.12 0.11 0.57 16 20 C -0.16 -1.71 7.93 31.18 0.25 -1.47 16 21 C -0.13 -0.94 8.09 31.18 0.25 -0.69 16 22 C -0.13 -1.30 7.92 31.12 0.25 -1.06 16 23 C -0.16 -4.14 9.97 22.32 0.22 -3.91 16 24 C -0.04 -1.32 9.64 22.51 0.22 -1.10 16 25 H 0.08 1.98 7.28 -2.39 -0.02 1.96 16 26 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.09 2.40 5.50 -2.38 -0.01 2.39 16 28 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 29 H 0.00 -0.01 7.36 -2.39 -0.02 -0.02 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.15 3.29 5.77 -2.91 -0.02 3.27 16 32 H 0.17 2.15 5.90 -2.91 -0.02 2.13 16 33 H 0.12 1.18 5.94 -2.39 -0.01 1.16 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -77.74 340.44 4.56 -73.18 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.03 Total: 9.02 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 4.64 Total: -2.57 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.16 Total: -86.27 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.98 Total: -41.06 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -77.74 4.56 -73.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729474.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.763 kcal (2) G-P(sol) polarization free energy of solvation -77.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds