Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47344 * 2 1 4 4 C 1.36904 * 119.99798 * 277.67445 * 3 2 1 5 5 H 1.08006 * 119.99681 * 138.48511 * 4 3 2 6 6 C 1.39020 * 120.00226 * 318.49120 * 4 3 2 7 7 N 1.31385 * 119.99810 * 162.33207 * 6 4 3 8 8 Si 1.86798 * 120.00125 * 342.33217 * 6 4 3 9 9 H 1.48507 * 109.47085 * 89.18959 * 8 6 4 10 10 H 1.48499 * 109.47133 * 209.18785 * 8 6 4 11 11 H 1.48501 * 109.46866 * 329.19014 * 8 6 4 12 12 C 1.34771 * 120.00182 * 97.67751 * 3 2 1 13 13 O 1.21617 * 119.99925 * 185.88753 * 12 3 2 14 14 C 1.47494 * 119.99762 * 5.89370 * 12 3 2 15 15 C 1.39804 * 120.09333 * 139.99133 * 14 12 3 16 16 C 1.37691 * 119.90343 * 179.72186 * 15 14 12 17 17 C 1.39005 * 120.09539 * 0.27181 * 16 15 14 18 18 O 1.35711 * 119.90570 * 180.02562 * 17 16 15 19 19 C 1.42897 * 117.00236 * 6.17980 * 18 17 16 20 20 C 1.53779 * 113.61781 * 254.83677 * 19 18 17 21 21 C 1.53955 * 87.02227 * 220.04502 * 20 19 18 22 22 C 1.53785 * 113.61733 * 157.22514 * 19 18 17 23 23 C 1.39016 * 120.19096 * 0.02562 * 17 16 15 24 24 C 1.37687 * 120.09096 * 359.95698 * 23 17 16 25 25 H 1.08998 * 109.46796 * 195.57848 * 1 2 3 26 26 H 1.09005 * 109.46536 * 315.57624 * 1 2 3 27 27 H 1.08995 * 109.46827 * 75.57711 * 1 2 3 28 28 H 1.09003 * 109.46842 * 239.99971 * 2 1 3 29 29 H 1.09005 * 109.47506 * 120.00122 * 2 1 3 30 30 H 0.97001 * 119.99820 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.04712 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.95131 * 180.29851 * 16 15 14 33 33 H 1.08998 * 112.84775 * 26.03483 * 19 18 17 34 34 H 1.09000 * 113.61021 * 334.56919 * 20 19 18 35 35 H 1.09004 * 113.60946 * 105.46561 * 20 19 18 36 36 H 1.09000 * 113.53551 * 270.81288 * 21 20 19 37 37 H 1.08995 * 113.66393 * 139.92790 * 21 20 19 38 38 H 1.08991 * 113.61958 * 254.53569 * 22 19 18 39 39 H 1.09006 * 113.61130 * 25.35449 * 22 19 18 40 40 H 1.07994 * 119.95497 * 179.97438 * 23 17 16 41 41 H 1.08001 * 120.04712 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0973 2.0793 -1.1750 5 1 1.7955 3.1158 -1.2086 6 6 2.5659 1.4541 -2.3249 7 7 2.3263 1.9823 -3.5039 8 14 3.5360 -0.1368 -2.1939 9 1 2.6014 -1.2905 -2.2259 10 1 4.4825 -0.2348 -3.3339 11 1 4.2951 -0.1499 -0.9176 12 6 2.3901 1.9646 1.1567 13 8 2.6933 3.1422 1.1738 14 6 2.4292 1.1747 2.4017 15 6 3.4694 1.3602 3.3171 16 6 3.4990 0.6249 4.4809 17 6 2.4996 -0.3049 4.7434 18 8 2.5322 -1.0273 5.8919 19 6 3.5416 -0.6864 6.8442 20 6 4.7035 -1.6924 6.8971 21 6 4.6821 -1.5145 8.4262 22 6 3.2035 -1.1174 8.2812 23 6 1.4667 -0.4970 3.8330 24 6 1.4293 0.2344 2.6670 25 1 -0.3633 -0.9899 0.2760 26 1 -0.3632 0.7340 0.7194 27 1 -0.3633 0.2560 -0.9952 28 1 1.8933 -0.5139 -0.8900 29 1 1.8935 -0.5139 0.8900 30 1 2.6535 1.5463 -4.3062 31 1 4.2464 2.0822 3.1138 32 1 4.2995 0.7710 5.1908 33 1 3.8656 0.3512 6.7644 34 1 4.4282 -2.6950 6.5702 35 1 5.6174 -1.3288 6.4270 36 1 5.3194 -0.7036 8.7790 37 1 4.8329 -2.4430 8.9768 38 1 2.9081 -0.2906 8.9270 39 1 2.5161 -1.9618 8.3335 40 1 0.6925 -1.2207 4.0406 41 1 0.6264 0.0849 1.9604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079733533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = 4.767724 kcal Electronic energy + Delta-G solvation = -22946.151167 eV Core-core repulsion = 19600.513429 eV Total energy + Delta-G solvation = -3345.637738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53191 -39.41488 -37.82069 -35.99907 -35.33112 -32.40782 -30.92047 -29.95108 -29.68745 -26.05174 -25.80550 -25.10603 -22.98409 -22.47850 -22.33159 -19.89906 -19.32774 -18.48260 -16.94324 -16.62310 -16.04759 -15.86189 -15.71447 -15.02188 -14.74692 -14.45634 -14.23713 -13.70810 -13.42429 -13.01850 -12.86230 -12.78995 -12.52935 -12.38419 -12.31595 -12.04609 -11.90890 -11.70835 -11.38918 -11.32504 -10.99864 -10.82041 -10.79738 -10.49691 -10.43846 -10.09511 -9.85134 -9.07563 -8.79700 -8.57670 -7.94766 -7.72904 -6.40152 -4.00852 1.36877 1.54101 3.01764 3.15373 3.20860 3.26367 3.57774 4.11961 4.13366 4.20345 4.23019 4.46240 4.46974 4.48946 4.85431 4.92879 5.02452 5.09954 5.31381 5.37436 5.39580 5.44625 5.49927 5.57108 5.58496 5.63650 5.68623 5.83061 5.87291 5.94280 5.98906 6.17904 6.20424 6.39322 6.42701 6.49719 6.72381 6.80439 6.87701 7.47403 7.56772 8.29079 8.51183 8.93664 9.28896 9.75836 10.71406 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027770 B = 0.003839 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.051565 B = 7292.394354 C = 7323.562860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 N -0.457 5.457 4 C -0.312 4.312 5 H 0.106 0.894 6 C 0.062 3.938 7 N -0.864 5.864 8 Si 0.879 3.121 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.506 3.494 13 O -0.561 6.561 14 C -0.141 4.141 15 C -0.037 4.037 16 C -0.216 4.216 17 C 0.130 3.870 18 O -0.303 6.303 19 C 0.053 3.947 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.160 4.160 24 C -0.078 4.078 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.275 0.725 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -10.735 19.752 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.055 4.055 3 N -0.178 5.178 4 C -0.439 4.439 5 H 0.124 0.876 6 C -0.144 4.144 7 N -0.500 5.500 8 Si 0.707 3.293 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.188 1.188 12 C 0.295 3.705 13 O -0.443 6.443 14 C -0.144 4.144 15 C -0.056 4.056 16 C -0.234 4.234 17 C 0.084 3.916 18 O -0.217 6.217 19 C -0.004 4.004 20 C -0.195 4.195 21 C -0.178 4.178 22 C -0.169 4.169 23 C -0.179 4.179 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.148 0.852 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.445 -10.285 19.563 22.149 hybrid contribution 0.730 -0.782 -0.175 1.084 sum 2.175 -11.067 19.387 22.429 Atomic orbital electron populations 1.22168 0.96051 1.00690 1.03428 1.22242 0.94925 0.86123 1.02198 1.43653 1.55856 1.11519 1.06764 1.19030 1.42920 0.98457 0.83477 0.87644 1.25398 0.95882 0.98212 0.94904 1.69698 1.42312 1.40414 0.97599 0.86972 0.80708 0.83091 0.78544 1.19795 1.21417 1.18832 1.18168 0.81087 0.87758 0.83462 1.90652 1.52006 1.15774 1.85908 1.20306 0.97305 0.99577 0.97255 1.20966 0.96857 0.96360 0.91393 1.21096 1.00897 1.01321 1.00104 1.19154 0.94494 0.91417 0.86488 1.86087 1.53381 1.56164 1.26066 1.24192 0.88588 0.99404 0.88184 1.23543 0.98548 1.00854 0.96528 1.22686 0.96431 1.02333 0.96353 1.23180 0.97454 1.02294 0.93963 1.20330 0.98954 1.04202 0.94381 1.21909 0.98592 0.93175 0.95919 0.92472 0.92112 0.91102 0.91470 0.90436 0.91505 0.85128 0.85446 0.88141 0.88966 0.90800 0.89736 0.90442 0.90569 0.88898 0.85189 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 8.70 37.16 0.32 -2.51 16 2 C 0.07 1.39 4.60 -4.04 -0.02 1.37 16 3 N -0.46 -11.33 2.13 -116.00 -0.25 -11.57 16 4 C -0.31 -8.89 9.28 -15.00 -0.14 -9.03 16 5 H 0.11 3.38 7.94 -52.48 -0.42 2.96 16 6 C 0.06 1.73 5.38 -17.45 -0.09 1.63 16 7 N -0.86 -25.01 13.96 55.50 0.77 -24.24 16 8 Si 0.88 20.84 25.15 -169.99 -4.28 16.57 16 9 H -0.27 -5.91 6.47 56.52 0.37 -5.54 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.51 12.44 7.28 -12.49 -0.09 12.35 16 13 O -0.56 -15.85 16.82 5.26 0.09 -15.76 16 14 C -0.14 -2.78 5.29 -104.96 -0.55 -3.33 16 15 C -0.04 -0.64 9.63 -39.20 -0.38 -1.02 16 16 C -0.22 -3.12 8.99 -39.50 -0.35 -3.47 16 17 C 0.13 1.86 6.69 -39.01 -0.26 1.60 16 18 O -0.30 -3.87 10.13 -18.84 -0.19 -4.06 16 19 C 0.05 0.51 3.63 -25.92 -0.09 0.42 16 20 C -0.16 -1.30 7.93 -25.83 -0.20 -1.50 16 21 C -0.14 -0.90 8.09 -25.82 -0.21 -1.11 16 22 C -0.13 -0.99 7.92 -25.91 -0.21 -1.20 16 23 C -0.16 -2.33 9.97 -39.49 -0.39 -2.72 16 24 C -0.08 -1.29 7.35 -39.20 -0.29 -1.58 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.02 7.01 -51.93 -0.36 0.66 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.07 1.44 2.94 -51.93 -0.15 1.29 16 29 H 0.08 1.41 4.76 -51.93 -0.25 1.16 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.13 1.49 5.93 -52.49 -0.31 1.18 16 33 H 0.10 0.92 6.00 -51.93 -0.31 0.61 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.15 2.36 3.36 -52.49 -0.18 2.18 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -32.60 327.10 -7.26 -39.86 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.38 Total: 4.40 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.96 Total: -10.12 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.53 Total: -35.81 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.10 Total: -19.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.28 Total: 16.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.60 -7.26 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079733533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.626 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds