Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47344 * 2 1 4 4 C 1.36904 * 119.99798 * 277.67445 * 3 2 1 5 5 H 1.08006 * 119.99681 * 138.48511 * 4 3 2 6 6 C 1.39020 * 120.00226 * 318.49120 * 4 3 2 7 7 N 1.31385 * 119.99810 * 162.33207 * 6 4 3 8 8 Si 1.86798 * 120.00125 * 342.33217 * 6 4 3 9 9 H 1.48507 * 109.47085 * 89.18959 * 8 6 4 10 10 H 1.48499 * 109.47133 * 209.18785 * 8 6 4 11 11 H 1.48501 * 109.46866 * 329.19014 * 8 6 4 12 12 C 1.34771 * 120.00182 * 97.67751 * 3 2 1 13 13 O 1.21617 * 119.99925 * 185.88753 * 12 3 2 14 14 C 1.47494 * 119.99762 * 5.89370 * 12 3 2 15 15 C 1.39804 * 120.09333 * 139.99133 * 14 12 3 16 16 C 1.37691 * 119.90343 * 179.72186 * 15 14 12 17 17 C 1.39005 * 120.09539 * 0.27181 * 16 15 14 18 18 O 1.35711 * 119.90570 * 180.02562 * 17 16 15 19 19 C 1.42897 * 117.00236 * 6.17980 * 18 17 16 20 20 C 1.53779 * 113.61781 * 254.83677 * 19 18 17 21 21 C 1.53955 * 87.02227 * 220.04502 * 20 19 18 22 22 C 1.53785 * 113.61733 * 157.22514 * 19 18 17 23 23 C 1.39016 * 120.19096 * 0.02562 * 17 16 15 24 24 C 1.37687 * 120.09096 * 359.95698 * 23 17 16 25 25 H 1.08998 * 109.46796 * 195.57848 * 1 2 3 26 26 H 1.09005 * 109.46536 * 315.57624 * 1 2 3 27 27 H 1.08995 * 109.46827 * 75.57711 * 1 2 3 28 28 H 1.09003 * 109.46842 * 239.99971 * 2 1 3 29 29 H 1.09005 * 109.47506 * 120.00122 * 2 1 3 30 30 H 0.97001 * 119.99820 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.04712 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.95131 * 180.29851 * 16 15 14 33 33 H 1.08998 * 112.84775 * 26.03483 * 19 18 17 34 34 H 1.09000 * 113.61021 * 334.56919 * 20 19 18 35 35 H 1.09004 * 113.60946 * 105.46561 * 20 19 18 36 36 H 1.09000 * 113.53551 * 270.81288 * 21 20 19 37 37 H 1.08995 * 113.66393 * 139.92790 * 21 20 19 38 38 H 1.08991 * 113.61958 * 254.53569 * 22 19 18 39 39 H 1.09006 * 113.61130 * 25.35449 * 22 19 18 40 40 H 1.07994 * 119.95497 * 179.97438 * 23 17 16 41 41 H 1.08001 * 120.04712 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0973 2.0793 -1.1750 5 1 1.7955 3.1158 -1.2086 6 6 2.5659 1.4541 -2.3249 7 7 2.3263 1.9823 -3.5039 8 14 3.5360 -0.1368 -2.1939 9 1 2.6014 -1.2905 -2.2259 10 1 4.4825 -0.2348 -3.3339 11 1 4.2951 -0.1499 -0.9176 12 6 2.3901 1.9646 1.1567 13 8 2.6933 3.1422 1.1738 14 6 2.4292 1.1747 2.4017 15 6 3.4694 1.3602 3.3171 16 6 3.4990 0.6249 4.4809 17 6 2.4996 -0.3049 4.7434 18 8 2.5322 -1.0273 5.8919 19 6 3.5416 -0.6864 6.8442 20 6 4.7035 -1.6924 6.8971 21 6 4.6821 -1.5145 8.4262 22 6 3.2035 -1.1174 8.2812 23 6 1.4667 -0.4970 3.8330 24 6 1.4293 0.2344 2.6670 25 1 -0.3633 -0.9899 0.2760 26 1 -0.3632 0.7340 0.7194 27 1 -0.3633 0.2560 -0.9952 28 1 1.8933 -0.5139 -0.8900 29 1 1.8935 -0.5139 0.8900 30 1 2.6535 1.5463 -4.3062 31 1 4.2464 2.0822 3.1138 32 1 4.2995 0.7710 5.1908 33 1 3.8656 0.3512 6.7644 34 1 4.4282 -2.6950 6.5702 35 1 5.6174 -1.3288 6.4270 36 1 5.3194 -0.7036 8.7790 37 1 4.8329 -2.4430 8.9768 38 1 2.9081 -0.2906 8.9270 39 1 2.5161 -1.9618 8.3335 40 1 0.6925 -1.2207 4.0406 41 1 0.6264 0.0849 1.9604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079733533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -15.679844 kcal Electronic energy + Delta-G solvation = -22947.037840 eV Core-core repulsion = 19600.513429 eV Total energy + Delta-G solvation = -3346.524411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68900 -40.82075 -38.97642 -37.24348 -37.06507 -34.43510 -32.30028 -31.44913 -31.13125 -27.28299 -26.61528 -26.38164 -24.56666 -23.86647 -23.50902 -21.09661 -20.50880 -19.51609 -18.92150 -18.16053 -17.78538 -17.04517 -16.58947 -16.33039 -16.05924 -15.84472 -15.60119 -15.10496 -14.93793 -14.50861 -14.39750 -14.25675 -13.72163 -13.54665 -13.45801 -13.37953 -13.25593 -12.89955 -12.70979 -12.59510 -12.39710 -12.17423 -11.99826 -11.74825 -11.65250 -11.31661 -11.18201 -11.05247 -10.51025 -10.03431 -9.74681 -9.18966 -8.54431 -6.21804 0.04334 0.31259 1.14463 1.28285 1.39856 1.92065 2.13693 2.21968 2.57702 2.80956 2.90263 3.55559 3.60146 3.74664 3.77858 3.82998 3.89506 3.91927 4.03284 4.21304 4.28626 4.39517 4.44839 4.53675 4.60577 4.80069 4.81548 4.87076 4.91391 4.97883 5.01974 5.05427 5.10479 5.13995 5.25793 5.35153 5.39749 5.46886 5.54057 5.67035 6.00778 6.43933 6.53541 6.86410 7.21451 7.78403 8.62351 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027770 B = 0.003839 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.051565 B = 7292.394354 C = 7323.562860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.062 3.938 3 N -0.467 5.467 4 C -0.332 4.332 5 H 0.045 0.955 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.945 3.055 9 H -0.230 1.230 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.501 3.499 13 O -0.617 6.617 14 C -0.175 4.175 15 C -0.046 4.046 16 C -0.207 4.207 17 C 0.144 3.856 18 O -0.305 6.305 19 C 0.033 3.967 20 C -0.159 4.159 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.154 4.154 24 C -0.072 4.072 25 H 0.107 0.893 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.282 0.718 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -14.705 22.867 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.060 4.060 3 N -0.187 5.187 4 C -0.460 4.460 5 H 0.063 0.937 6 C -0.184 4.184 7 N -0.546 5.546 8 Si 0.769 3.231 9 H -0.155 1.155 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.292 3.708 13 O -0.503 6.503 14 C -0.178 4.178 15 C -0.065 4.065 16 C -0.225 4.225 17 C 0.098 3.902 18 O -0.218 6.218 19 C -0.022 4.022 20 C -0.197 4.197 21 C -0.168 4.168 22 C -0.166 4.166 23 C -0.172 4.172 24 C -0.090 4.090 25 H 0.126 0.874 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.174 0.826 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.180 0.820 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.626 -14.295 22.694 26.870 hybrid contribution 0.658 0.498 -0.934 1.246 sum 2.284 -13.797 21.760 25.866 Atomic orbital electron populations 1.22148 0.93662 1.03608 1.02369 1.22534 0.96992 0.83374 1.03065 1.43755 1.56356 1.13069 1.05532 1.18609 1.44641 0.96818 0.85923 0.93744 1.26133 0.96067 1.02393 0.93851 1.69808 1.43434 1.42761 0.98550 0.85919 0.79419 0.79582 0.78161 1.15460 1.21050 1.19210 1.18999 0.79347 0.87444 0.85001 1.90594 1.54180 1.18449 1.87118 1.19955 1.00303 1.01585 0.95963 1.20982 0.96355 0.96918 0.92266 1.21280 1.01755 1.00339 0.99140 1.19311 0.93705 0.90363 0.86859 1.86118 1.54404 1.55675 1.25618 1.24651 0.88789 1.00231 0.88547 1.23564 0.97921 1.00114 0.98053 1.22688 0.95700 1.03319 0.95050 1.23212 0.98308 1.02617 0.92414 1.20606 0.99555 1.03881 0.93150 1.21921 0.97705 0.92336 0.97033 0.87409 0.92246 0.93221 0.92242 0.87613 0.90851 0.86228 0.82602 0.87589 0.89402 0.90535 0.88579 0.89300 0.89585 0.88920 0.81985 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 8.70 71.98 0.63 -4.58 16 2 C 0.06 2.43 4.60 86.38 0.40 2.83 16 3 N -0.47 -23.90 2.13 -639.17 -1.36 -25.26 16 4 C -0.33 -20.19 9.28 84.09 0.78 -19.41 16 5 H 0.04 3.16 7.94 -2.91 -0.02 3.13 16 6 C 0.02 1.05 5.38 84.95 0.46 1.51 16 7 N -0.91 -54.84 13.96 21.68 0.30 -54.53 16 8 Si 0.95 43.01 25.15 68.60 1.73 44.74 16 9 H -0.23 -8.95 6.47 99.48 0.64 -8.31 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 C 0.50 25.71 7.28 86.68 0.63 26.34 16 13 O -0.62 -37.43 16.82 -4.08 -0.07 -37.50 16 14 C -0.17 -6.86 5.29 -20.08 -0.11 -6.96 16 15 C -0.05 -1.59 9.63 22.52 0.22 -1.37 16 16 C -0.21 -5.44 8.99 22.32 0.20 -5.24 16 17 C 0.14 3.60 6.69 22.64 0.15 3.75 16 18 O -0.30 -6.55 10.13 -90.32 -0.92 -7.46 16 19 C 0.03 0.52 3.63 31.12 0.11 0.64 16 20 C -0.16 -2.07 7.93 31.18 0.25 -1.83 16 21 C -0.13 -1.18 8.09 31.18 0.25 -0.92 16 22 C -0.13 -1.46 7.92 31.12 0.25 -1.21 16 23 C -0.15 -3.85 9.97 22.33 0.22 -3.63 16 24 C -0.07 -2.21 7.35 22.52 0.17 -2.05 16 25 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.06 1.94 7.01 -2.38 -0.02 1.92 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 2.42 2.94 -2.39 -0.01 2.41 16 29 H 0.11 3.56 4.76 -2.38 -0.01 3.54 16 30 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.16 3.13 5.93 -2.91 -0.02 3.11 16 33 H 0.11 1.55 6.00 -2.39 -0.01 1.54 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.16 4.54 3.36 -2.91 -0.01 4.53 16 Total: -1.00 -77.53 327.10 5.27 -72.26 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.99 Total: 19.89 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.60 Total: -12.13 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.06 Total: -79.80 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.98 Total: -44.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.73 Total: 44.74 kcal Total: -77.53 5.27 -72.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079733533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.581 kcal (2) G-P(sol) polarization free energy of solvation -77.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds