Wall clock time and date at job start Tue Mar 31 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00198 * 2 1 4 4 C 1.38758 * 120.05410 * 359.73638 * 3 2 1 5 5 C 1.38121 * 119.94153 * 179.69516 * 4 3 2 6 6 C 1.38291 * 120.05762 * 0.59376 * 5 4 3 7 7 C 1.38243 * 120.10720 * 359.67978 * 6 5 4 8 8 C 1.50702 * 119.97002 * 179.97438 * 7 6 5 9 9 C 1.53047 * 109.45941 * 60.08996 * 8 7 6 10 10 C 1.53196 * 109.31230 * 178.61442 * 9 8 7 11 11 N 1.46921 * 108.77681 * 54.63737 * 10 9 8 12 12 C 1.34776 * 120.63567 * 126.41074 * 11 10 9 13 13 O 1.21685 * 120.00371 * 174.72981 * 12 11 10 14 14 C 1.46375 * 119.99722 * 354.73107 * 12 11 10 15 15 H 1.08002 * 119.99890 * 5.56650 * 14 12 11 16 16 C 1.40045 * 119.99935 * 185.56975 * 14 12 11 17 17 N 1.30669 * 120.00315 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 119.99871 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47044 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47043 * 120.00117 * 18 16 14 21 21 H 1.48505 * 109.47006 * 240.00197 * 18 16 14 22 22 C 1.46927 * 118.73615 * 306.39169 * 11 10 9 23 23 C 1.53036 * 109.46307 * 300.02437 * 8 7 6 24 24 C 1.38165 * 120.06130 * 0.02562 * 7 6 5 25 25 H 1.08993 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47104 * 299.99485 * 1 2 3 27 27 H 1.09002 * 109.47123 * 59.99320 * 1 2 3 28 28 H 1.07998 * 120.02947 * 359.96525 * 4 3 2 29 29 H 1.07997 * 119.97320 * 180.29099 * 5 4 3 30 30 H 1.07993 * 119.94838 * 179.69687 * 6 5 4 31 31 H 1.09004 * 109.46296 * 180.02562 * 8 7 6 32 32 H 1.09006 * 109.49582 * 298.56648 * 9 8 7 33 33 H 1.09000 * 109.49959 * 58.66373 * 9 8 7 34 34 H 1.08991 * 109.58469 * 294.84455 * 10 9 8 35 35 H 1.09004 * 109.70015 * 174.49527 * 10 9 8 36 36 H 0.96996 * 120.00200 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.58848 * 293.81834 * 22 11 10 38 38 H 1.08999 * 109.70624 * 173.46801 * 22 11 10 39 39 H 1.09006 * 109.49714 * 301.33683 * 23 8 7 40 40 H 1.09004 * 109.50123 * 61.42924 * 23 8 7 41 41 H 1.07998 * 120.02888 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0055 5 6 1.9209 3.6048 0.0009 6 6 3.3020 3.6758 0.0003 7 6 4.0559 2.5171 0.0001 8 6 5.5608 2.5981 -0.0010 9 6 6.0321 3.3444 1.2492 10 6 7.5632 3.3946 1.2622 11 7 8.0279 3.9817 -0.0019 12 6 8.8665 5.0367 -0.0019 13 8 9.3199 5.4536 -1.0514 14 6 9.2320 5.6810 1.2605 15 1 8.9029 5.2577 2.1980 16 6 10.0084 6.8466 1.2527 17 7 10.4070 7.3586 0.1186 18 14 10.4742 7.6693 2.8639 19 1 9.9035 6.8975 3.9969 20 1 11.9533 7.7107 2.9890 21 1 9.9366 9.0534 2.8865 22 6 7.5612 3.3964 -1.2662 23 6 6.0302 3.3461 -1.2509 24 6 3.4311 1.2848 -0.0001 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2128 2.3204 -0.0104 29 1 1.3340 4.5114 0.0013 30 1 3.7923 4.6380 0.0004 31 1 5.9787 1.5914 -0.0015 32 1 5.6349 4.3595 1.2384 33 1 5.6777 2.8240 2.1389 34 1 7.9610 2.3851 1.3644 35 1 7.9037 4.0077 2.0968 36 1 10.9444 8.1660 0.1132 37 1 7.9589 2.3869 -1.3704 38 1 7.8983 4.0098 -2.1018 39 1 5.6743 2.8268 -2.1408 40 1 5.6330 4.3611 -1.2382 41 1 4.0207 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082255001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:03 Heat of formation + Delta-G solvation = -55.502297 kcal Electronic energy + Delta-G solvation = -22661.912863 eV Core-core repulsion = 19313.661621 eV Total energy + Delta-G solvation = -3348.251242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33065 -38.84831 -37.47631 -35.63459 -32.78562 -32.39105 -30.80913 -30.50786 -29.18332 -27.49782 -26.36791 -24.37512 -22.65457 -22.53524 -21.55185 -20.13180 -18.78215 -17.75508 -16.58847 -16.27980 -15.90857 -15.85360 -15.67674 -14.64674 -14.40815 -14.17963 -13.85407 -13.74844 -13.53469 -13.45421 -12.82319 -12.67821 -12.42924 -12.24534 -11.79472 -11.71483 -11.50427 -11.30660 -11.18382 -11.05831 -10.95293 -10.69842 -10.56775 -10.43774 -10.19950 -9.95936 -9.78351 -8.85522 -8.77782 -8.22396 -7.55280 -7.18383 -6.18745 -4.63068 1.30338 1.43436 3.10507 3.12975 3.21384 3.25309 3.74044 4.09612 4.55942 4.60351 4.66996 4.75095 4.88454 4.89461 5.02770 5.09360 5.19615 5.35054 5.37191 5.40661 5.52493 5.70741 5.73141 5.82071 5.91812 5.96932 6.05374 6.18525 6.24934 6.32138 6.35137 6.44450 6.52973 6.56511 6.61672 6.68197 6.74495 6.90801 7.29523 7.47227 7.66612 8.16667 8.38421 9.03651 9.46611 10.59259 10.78053 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.003316 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.624153 B = 8442.477870 C = 8742.534083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.218 4.218 5 C -0.080 4.080 6 C -0.147 4.147 7 C -0.026 4.026 8 C -0.047 4.047 9 C -0.124 4.124 10 C 0.122 3.878 11 N -0.642 5.642 12 C 0.560 3.440 13 O -0.579 6.579 14 C -0.544 4.544 15 H 0.074 0.926 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.905 3.095 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.121 3.879 23 C -0.121 4.121 24 C -0.151 4.151 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.095 0.905 36 H 0.267 0.733 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.250 -11.052 2.136 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.237 4.237 5 C -0.098 4.098 6 C -0.165 4.165 7 C -0.027 4.027 8 C -0.066 4.066 9 C -0.162 4.162 10 C -0.003 4.003 11 N -0.381 5.381 12 C 0.366 3.634 13 O -0.462 6.462 14 C -0.581 4.581 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.730 3.270 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.003 4.003 23 C -0.159 4.159 24 C -0.169 4.169 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.794 -10.857 1.447 20.895 hybrid contribution -0.281 0.476 0.844 1.009 sum -18.075 -10.382 2.291 20.970 Atomic orbital electron populations 1.23011 0.78701 1.03672 1.01250 1.86059 1.21137 1.27224 1.88967 1.18993 0.92290 0.83964 0.96947 1.21149 0.99653 0.92509 1.10389 1.20920 0.94654 0.96823 0.97411 1.21025 0.93455 0.98658 1.03386 1.19829 0.95954 0.91888 0.94983 1.20216 0.89216 1.00362 0.96766 1.22013 0.97631 1.00553 0.96034 1.21425 0.91713 0.97713 0.89429 1.48174 1.51300 1.35121 1.03462 1.18246 0.77160 0.77410 0.90630 1.90587 1.56443 1.64827 1.34315 1.21019 1.34682 1.10315 0.92061 0.90849 1.25730 0.94038 0.96561 0.96877 1.70023 1.26473 1.17133 1.26139 0.86357 0.78684 0.79355 0.82630 1.18722 1.20173 1.20199 1.21110 0.91584 0.97456 0.90185 1.21975 0.97449 1.00409 0.96107 1.20333 0.91100 0.98253 1.07254 0.88445 0.92778 0.92792 0.85930 0.85971 0.85598 0.90540 0.91330 0.91880 0.94101 0.88717 0.92181 0.94134 0.89794 0.91979 0.91551 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.62 10.50 -19.44 -0.20 -3.83 16 3 C 0.12 1.51 6.69 -39.21 -0.26 1.24 16 4 C -0.22 -2.40 9.04 -39.43 -0.36 -2.76 16 5 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 6 C -0.15 -1.91 8.74 -39.56 -0.35 -2.26 16 7 C -0.03 -0.35 4.78 -104.65 -0.50 -0.85 16 8 C -0.05 -0.67 2.32 -91.73 -0.21 -0.89 16 9 C -0.12 -1.90 5.15 -26.61 -0.14 -2.04 16 10 C 0.12 2.24 6.35 -3.71 -0.02 2.22 16 11 N -0.64 -14.55 2.97 -174.43 -0.52 -15.07 16 12 C 0.56 15.91 7.61 -12.99 -0.10 15.81 16 13 O -0.58 -18.79 14.48 5.20 0.08 -18.71 16 14 C -0.54 -15.15 8.88 -35.63 -0.32 -15.47 16 15 H 0.07 1.86 5.64 -52.49 -0.30 1.57 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 17 N -0.77 -23.01 11.84 55.55 0.66 -22.36 16 18 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 19 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.12 2.37 6.41 -3.71 -0.02 2.35 16 23 C -0.12 -1.93 5.15 -26.61 -0.14 -2.07 16 24 C -0.15 -1.94 9.61 -39.43 -0.38 -2.32 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 27 H 0.05 0.33 7.65 -51.93 -0.40 -0.06 16 28 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.66 7.13 -52.49 -0.37 1.29 16 31 H 0.08 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.07 1.13 7.44 -51.93 -0.39 0.74 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.84 5.30 -51.93 -0.28 1.57 16 36 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.86 7.04 -51.93 -0.37 1.49 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.14 7.44 -51.93 -0.39 0.75 16 41 H 0.13 1.53 7.94 -52.49 -0.42 1.11 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -34.31 331.25 -8.02 -42.33 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.71 Total: 2.49 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.29 Total: -4.81 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.14 Total: -37.42 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.13 Total: -22.54 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.31 -8.02 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082255001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.168 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds