Wall clock time and date at job start Tue Mar 31 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00198 * 2 1 4 4 C 1.38758 * 120.05410 * 359.73638 * 3 2 1 5 5 C 1.38121 * 119.94153 * 179.69516 * 4 3 2 6 6 C 1.38291 * 120.05762 * 0.59376 * 5 4 3 7 7 C 1.38243 * 120.10720 * 359.67978 * 6 5 4 8 8 C 1.50702 * 119.97002 * 179.97438 * 7 6 5 9 9 C 1.53047 * 109.45941 * 60.08996 * 8 7 6 10 10 C 1.53196 * 109.31230 * 178.61442 * 9 8 7 11 11 N 1.46921 * 108.77681 * 54.63737 * 10 9 8 12 12 C 1.34776 * 120.63567 * 126.41074 * 11 10 9 13 13 O 1.21685 * 120.00371 * 174.72981 * 12 11 10 14 14 C 1.46375 * 119.99722 * 354.73107 * 12 11 10 15 15 H 1.08002 * 119.99890 * 5.56650 * 14 12 11 16 16 C 1.40045 * 119.99935 * 185.56975 * 14 12 11 17 17 N 1.30669 * 120.00315 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 119.99871 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47044 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47043 * 120.00117 * 18 16 14 21 21 H 1.48505 * 109.47006 * 240.00197 * 18 16 14 22 22 C 1.46927 * 118.73615 * 306.39169 * 11 10 9 23 23 C 1.53036 * 109.46307 * 300.02437 * 8 7 6 24 24 C 1.38165 * 120.06130 * 0.02562 * 7 6 5 25 25 H 1.08993 * 109.47453 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47104 * 299.99485 * 1 2 3 27 27 H 1.09002 * 109.47123 * 59.99320 * 1 2 3 28 28 H 1.07998 * 120.02947 * 359.96525 * 4 3 2 29 29 H 1.07997 * 119.97320 * 180.29099 * 5 4 3 30 30 H 1.07993 * 119.94838 * 179.69687 * 6 5 4 31 31 H 1.09004 * 109.46296 * 180.02562 * 8 7 6 32 32 H 1.09006 * 109.49582 * 298.56648 * 9 8 7 33 33 H 1.09000 * 109.49959 * 58.66373 * 9 8 7 34 34 H 1.08991 * 109.58469 * 294.84455 * 10 9 8 35 35 H 1.09004 * 109.70015 * 174.49527 * 10 9 8 36 36 H 0.96996 * 120.00200 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.58848 * 293.81834 * 22 11 10 38 38 H 1.08999 * 109.70624 * 173.46801 * 22 11 10 39 39 H 1.09006 * 109.49714 * 301.33683 * 23 8 7 40 40 H 1.09004 * 109.50123 * 61.42924 * 23 8 7 41 41 H 1.07998 * 120.02888 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0055 5 6 1.9209 3.6048 0.0009 6 6 3.3020 3.6758 0.0003 7 6 4.0559 2.5171 0.0001 8 6 5.5608 2.5981 -0.0010 9 6 6.0321 3.3444 1.2492 10 6 7.5632 3.3946 1.2622 11 7 8.0279 3.9817 -0.0019 12 6 8.8665 5.0367 -0.0019 13 8 9.3199 5.4536 -1.0514 14 6 9.2320 5.6810 1.2605 15 1 8.9029 5.2577 2.1980 16 6 10.0084 6.8466 1.2527 17 7 10.4070 7.3586 0.1186 18 14 10.4742 7.6693 2.8639 19 1 9.9035 6.8975 3.9969 20 1 11.9533 7.7107 2.9890 21 1 9.9366 9.0534 2.8865 22 6 7.5612 3.3964 -1.2662 23 6 6.0302 3.3461 -1.2509 24 6 3.4311 1.2848 -0.0001 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.2128 2.3204 -0.0104 29 1 1.3340 4.5114 0.0013 30 1 3.7923 4.6380 0.0004 31 1 5.9787 1.5914 -0.0015 32 1 5.6349 4.3595 1.2384 33 1 5.6777 2.8240 2.1389 34 1 7.9610 2.3851 1.3644 35 1 7.9037 4.0077 2.0968 36 1 10.9444 8.1660 0.1132 37 1 7.9589 2.3869 -1.3704 38 1 7.8983 4.0098 -2.1018 39 1 5.6743 2.8268 -2.1408 40 1 5.6330 4.3611 -1.2382 41 1 4.0207 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082255001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:02 Heat of formation + Delta-G solvation = -77.056104 kcal Electronic energy + Delta-G solvation = -22662.847506 eV Core-core repulsion = 19313.661621 eV Total energy + Delta-G solvation = -3349.185886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26421 -40.25882 -38.78933 -37.25295 -34.69436 -34.08360 -32.06582 -31.67543 -30.35776 -28.41529 -28.09914 -25.80618 -24.03588 -23.57161 -22.83118 -21.55368 -20.33736 -18.75789 -18.36246 -17.68296 -17.12608 -16.79628 -16.60349 -16.26951 -15.95037 -15.57679 -15.46875 -14.90065 -14.72421 -14.43883 -14.30354 -14.13762 -13.62906 -13.34026 -13.29412 -13.11525 -12.92394 -12.76000 -12.68333 -12.45659 -12.14921 -12.11274 -11.96174 -11.92040 -11.55715 -11.39596 -11.26654 -10.93654 -9.79969 -9.68659 -9.11625 -9.05415 -8.27635 -6.81575 0.38485 0.51571 1.40307 1.40898 1.58464 2.24825 2.38713 2.48107 2.81119 2.88925 3.56888 3.75637 3.81834 3.95631 4.06620 4.17270 4.28645 4.31372 4.36481 4.42003 4.44635 4.47071 4.57725 4.63375 4.72206 4.75984 4.91402 4.95618 4.97689 5.04014 5.07280 5.16206 5.18437 5.35635 5.40581 5.42737 5.55537 5.75853 5.81973 5.85284 6.17978 6.44779 6.49435 6.90067 7.45923 8.49432 8.69595 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.003316 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.624153 B = 8442.477870 C = 8742.534083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.163 4.163 7 C -0.034 4.034 8 C -0.038 4.038 9 C -0.114 4.114 10 C 0.117 3.883 11 N -0.645 5.645 12 C 0.540 3.460 13 O -0.635 6.635 14 C -0.567 4.567 15 H 0.095 0.905 16 C 0.027 3.973 17 N -0.825 5.825 18 Si 0.995 3.005 19 H -0.244 1.244 20 H -0.270 1.270 21 H -0.269 1.269 22 C 0.118 3.882 23 C -0.108 4.108 24 C -0.161 4.161 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.273 0.727 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.548 -12.368 4.220 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.099 4.099 6 C -0.181 4.181 7 C -0.034 4.034 8 C -0.056 4.056 9 C -0.152 4.152 10 C -0.006 4.006 11 N -0.381 5.381 12 C 0.347 3.653 13 O -0.523 6.523 14 C -0.604 4.604 15 H 0.113 0.887 16 C -0.187 4.187 17 N -0.455 5.455 18 Si 0.814 3.186 19 H -0.167 1.167 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.006 4.006 23 C -0.147 4.147 24 C -0.180 4.180 25 H 0.136 0.864 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.149 -12.235 3.552 23.839 hybrid contribution 0.317 0.771 0.138 0.845 sum -19.832 -11.464 3.690 23.203 Atomic orbital electron populations 1.23326 0.76536 1.05480 1.02212 1.86042 1.23414 1.26839 1.88769 1.19137 0.92343 0.84798 0.96605 1.21450 1.01037 0.91809 1.08974 1.21180 0.94136 0.98046 0.96513 1.21072 0.94440 0.98173 1.04436 1.19623 0.94979 0.92364 0.96424 1.20089 0.90346 1.00326 0.94879 1.21905 0.94953 1.00401 0.97932 1.21634 0.93995 0.98054 0.86904 1.48058 1.50089 1.33929 1.06036 1.18675 0.77736 0.78606 0.90331 1.90533 1.58826 1.67008 1.35933 1.21542 1.35098 1.10967 0.92769 0.88726 1.27004 0.93294 0.97019 1.01394 1.70203 1.27642 1.18061 1.29591 0.85014 0.78421 0.78096 0.77052 1.16650 1.19538 1.19428 1.21239 0.94267 0.97267 0.87782 1.21836 0.94266 1.00189 0.98385 1.20429 0.91855 0.98137 1.07534 0.86419 0.91722 0.91812 0.83310 0.83869 0.86657 0.89138 0.92819 0.89174 0.91890 0.89938 0.91709 0.92119 0.93394 0.89897 0.93292 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.74 10.50 -92.46 -0.97 -7.71 16 3 C 0.12 2.56 6.69 22.51 0.15 2.71 16 4 C -0.21 -4.09 9.04 22.37 0.20 -3.89 16 5 C -0.08 -1.66 10.04 22.25 0.22 -1.44 16 6 C -0.16 -4.04 8.74 22.28 0.19 -3.84 16 7 C -0.03 -0.85 4.78 -19.88 -0.09 -0.94 16 8 C -0.04 -1.03 2.32 -11.51 -0.03 -1.05 16 9 C -0.11 -3.33 5.15 30.68 0.16 -3.18 16 10 C 0.12 4.23 6.35 86.36 0.55 4.78 16 11 N -0.64 -29.90 2.97 -824.01 -2.45 -32.35 16 12 C 0.54 32.04 7.61 86.36 0.66 32.70 16 13 O -0.64 -43.71 14.48 -4.30 -0.06 -43.77 16 14 C -0.57 -32.26 8.88 24.83 0.22 -32.04 16 15 H 0.09 4.79 5.64 -2.91 -0.02 4.77 16 16 C 0.03 1.55 5.50 85.30 0.47 2.01 16 17 N -0.83 -51.29 11.84 21.83 0.26 -51.04 16 18 Si 0.99 41.14 29.56 68.60 2.03 43.16 16 19 H -0.24 -9.19 7.11 99.48 0.71 -8.49 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 C 0.12 4.75 6.41 86.36 0.55 5.31 16 23 C -0.11 -3.45 5.15 30.67 0.16 -3.29 16 24 C -0.16 -3.81 9.61 22.37 0.21 -3.60 16 25 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.57 7.67 -2.38 -0.02 0.56 16 27 H 0.06 0.58 7.65 -2.39 -0.02 0.56 16 28 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 29 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.12 3.04 7.13 -2.91 -0.02 3.02 16 31 H 0.09 2.23 7.87 -2.38 -0.02 2.21 16 32 H 0.05 1.74 7.44 -2.38 -0.02 1.72 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 3.17 5.30 -2.39 -0.01 3.15 16 36 H 0.27 15.34 8.29 -92.71 -0.77 14.58 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 2.26 7.04 -2.39 -0.02 2.24 16 39 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.05 1.72 7.44 -2.39 -0.02 1.70 16 41 H 0.13 2.91 7.94 -2.91 -0.02 2.89 16 Total: -1.00 -78.41 331.25 4.58 -73.83 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.03 Total: 22.31 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.74 Total: -4.43 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.19 Total: -83.39 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -1.03 Total: -51.48 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -78.41 4.58 -73.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082255001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.224 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds