Wall clock time and date at job start Tue Mar 31 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35898 * 117.00269 * 2 1 4 4 C 1.38730 * 120.05841 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94671 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05423 * 0.02738 * 5 4 3 7 7 C 1.50698 * 119.94403 * 179.97438 * 6 5 4 8 8 C 1.53035 * 109.45940 * 239.99470 * 7 6 5 9 9 C 1.53195 * 109.31439 * 178.62726 * 8 7 6 10 10 N 1.46927 * 108.77261 * 54.63651 * 9 8 7 11 11 C 1.34778 * 120.62908 * 126.37184 * 10 9 8 12 12 O 1.21691 * 119.99940 * 5.31170 * 11 10 9 13 13 C 1.46376 * 119.99715 * 185.31439 * 11 10 9 14 14 H 1.07994 * 120.00289 * 353.79813 * 13 11 10 15 15 C 1.40053 * 119.99929 * 173.79489 * 13 11 10 16 16 N 1.30677 * 119.99497 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00102 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47008 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47359 * 300.00359 * 17 15 13 20 20 H 1.48501 * 109.46967 * 60.00265 * 17 15 13 21 21 C 1.46928 * 118.73768 * 306.64092 * 10 9 8 22 22 C 1.52761 * 109.00758 * 53.31374 * 21 10 9 23 23 C 1.38271 * 120.11172 * 0.24303 * 6 5 4 24 24 C 1.38145 * 120.05355 * 359.45717 * 23 6 5 25 25 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47308 * 300.00847 * 1 2 3 27 27 H 1.09002 * 109.46935 * 60.00461 * 1 2 3 28 28 H 1.08004 * 120.03076 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97071 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.46062 * 359.96584 * 7 6 5 31 31 H 1.09002 * 109.50125 * 58.67639 * 8 7 6 32 32 H 1.09003 * 109.49982 * 298.58325 * 8 7 6 33 33 H 1.09001 * 109.58659 * 294.85117 * 9 8 7 34 34 H 1.08994 * 109.70407 * 174.49410 * 9 8 7 35 35 H 0.97003 * 119.99185 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58270 * 173.14473 * 21 10 9 37 37 H 1.08996 * 109.58751 * 293.57175 * 21 10 9 38 38 H 1.08994 * 109.56648 * 185.54605 * 22 21 10 39 39 H 1.09006 * 109.36054 * 65.49342 * 22 21 10 40 40 H 1.07992 * 119.96933 * 179.70878 * 23 6 5 41 41 H 1.07996 * 120.02688 * 180.24605 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 6 3.5743 5.7994 1.2528 9 6 4.2980 7.1496 1.2680 10 7 4.0251 7.8467 0.0038 11 6 3.5315 9.1008 0.0039 12 8 3.3985 9.7023 1.0533 13 6 3.1554 9.7393 -1.2585 14 1 3.3656 9.2469 -2.1963 15 6 2.5230 10.9889 -1.2500 16 7 2.2692 11.5849 -0.1151 17 14 2.0438 11.8041 -2.8609 18 1 1.3936 13.1096 -2.5808 19 1 3.2590 12.0226 -3.6859 20 1 1.0970 10.9279 -3.5965 21 6 4.2948 7.1483 -1.2605 22 6 3.5763 5.8003 -1.2474 23 6 1.9211 3.6048 0.0068 24 6 1.2915 2.3751 0.0000 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 4.0209 0.3799 0.0014 29 1 5.1345 2.5749 0.0019 30 1 5.0667 4.8754 0.0037 31 1 3.8454 5.2313 2.1426 32 1 2.4968 5.9643 1.2402 33 1 5.3709 6.9879 1.3719 34 1 3.9366 7.7508 2.1023 35 1 1.8315 12.4506 -0.1093 36 1 3.9290 7.7477 -2.0942 37 1 5.3674 6.9866 -1.3669 38 1 3.8488 5.2328 -2.1371 39 1 2.4988 5.9652 -1.2364 40 1 1.3343 4.5113 0.0119 41 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082255002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:07 Heat of formation + Delta-G solvation = -55.764056 kcal Electronic energy + Delta-G solvation = -22651.679521 eV Core-core repulsion = 19303.416928 eV Total energy + Delta-G solvation = -3348.262593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31704 -38.87046 -37.48588 -35.59614 -32.68561 -32.30465 -31.09528 -30.55156 -29.24252 -27.41306 -26.28852 -24.20327 -22.84369 -22.52695 -21.44626 -20.11150 -18.69614 -18.26477 -16.62657 -16.28882 -15.89118 -15.80284 -15.20047 -14.53167 -14.37092 -14.11492 -13.95309 -13.85214 -13.60791 -13.53458 -12.80608 -12.69585 -12.45386 -12.17500 -11.99794 -11.79375 -11.52053 -11.30502 -11.05570 -11.02441 -10.89455 -10.68638 -10.56417 -10.45825 -10.23235 -9.91077 -9.75134 -9.02307 -8.84660 -8.07445 -7.56269 -7.18796 -6.19271 -4.63787 1.31842 1.41089 3.13077 3.15075 3.20249 3.21740 3.73552 4.08985 4.55689 4.60203 4.69266 4.79819 4.87912 4.92180 4.93174 5.17433 5.21878 5.36730 5.37251 5.43534 5.54543 5.68878 5.73201 5.78270 5.92145 6.00394 6.05876 6.17402 6.21818 6.31869 6.33405 6.45016 6.54112 6.56172 6.61798 6.67362 6.74755 6.90755 7.28948 7.46287 7.66264 8.15581 8.37603 9.02685 9.46024 10.58708 10.77381 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.003432 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.218151 B = 8157.696430 C = 8604.028714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.152 4.152 5 C -0.080 4.080 6 C -0.101 4.101 7 C -0.042 4.042 8 C -0.121 4.121 9 C 0.121 3.879 10 N -0.642 5.642 11 C 0.560 3.440 12 O -0.579 6.579 13 C -0.545 4.545 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.267 1.267 20 H -0.268 1.268 21 C 0.122 3.878 22 C -0.125 4.125 23 C -0.072 4.072 24 C -0.205 4.205 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.269 0.731 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.126 0.874 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -19.900 -2.125 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.171 4.171 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.061 4.061 8 C -0.160 4.160 9 C -0.004 4.004 10 N -0.380 5.380 11 C 0.366 3.634 12 O -0.462 6.462 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.398 5.398 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.192 1.192 20 H -0.193 1.193 21 C -0.003 4.003 22 C -0.163 4.163 23 C -0.090 4.090 24 C -0.224 4.224 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.009 -19.564 -1.430 19.642 hybrid contribution -0.573 0.345 -0.862 1.091 sum -1.581 -19.220 -2.292 19.420 Atomic orbital electron populations 1.23020 0.78606 1.03657 1.01424 1.86034 1.21224 1.27233 1.89080 1.19008 0.92384 0.83985 0.97771 1.20367 0.91277 0.98508 1.06902 1.20897 0.99736 0.90937 0.98281 1.19949 0.93568 0.95213 1.01379 1.20119 0.99119 0.90474 0.96365 1.21982 1.01264 0.96414 0.96342 1.21117 0.97281 0.91822 0.90147 1.48172 1.70340 1.16065 1.03470 1.18228 0.76286 0.78283 0.90600 1.90587 1.58489 1.62817 1.34306 1.20950 1.41375 1.03870 0.92004 0.90954 1.25728 0.93892 0.96682 0.96890 1.70010 1.30303 1.13295 1.26190 0.86468 0.79320 0.78623 0.82564 1.20574 1.19226 1.19285 1.21337 0.97446 0.92109 0.89404 1.21948 1.01536 0.96531 0.96300 1.20891 0.94333 0.97009 0.96753 1.21221 0.99867 0.92375 1.08888 0.88462 0.92698 0.92696 0.85553 0.85461 0.90757 0.92049 0.91775 0.94168 0.89865 0.92068 0.88827 0.94158 0.91917 0.91570 0.85566 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.60 10.50 -19.42 -0.20 -3.81 16 3 C 0.11 1.37 6.69 -39.22 -0.26 1.11 16 4 C -0.15 -1.76 9.99 -39.43 -0.39 -2.16 16 5 C -0.08 -0.94 9.66 -39.60 -0.38 -1.32 16 6 C -0.10 -1.31 4.78 -104.60 -0.50 -1.81 16 7 C -0.04 -0.59 2.32 -91.73 -0.21 -0.80 16 8 C -0.12 -1.93 5.15 -26.61 -0.14 -2.06 16 9 C 0.12 2.36 6.42 -3.71 -0.02 2.33 16 10 N -0.64 -14.52 2.98 -174.69 -0.52 -15.04 16 11 C 0.56 15.92 7.61 -12.99 -0.10 15.83 16 12 O -0.58 -18.79 14.48 5.20 0.08 -18.71 16 13 C -0.55 -15.18 8.87 -35.63 -0.32 -15.50 16 14 H 0.07 1.83 5.65 -52.49 -0.30 1.53 16 15 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 16 N -0.77 -23.01 11.85 55.55 0.66 -22.35 16 17 Si 0.91 19.95 29.56 -169.99 -5.02 14.93 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 C 0.12 2.23 6.32 -3.93 -0.02 2.21 16 22 C -0.12 -1.90 5.14 -26.83 -0.14 -2.04 16 23 C -0.07 -0.93 8.73 -39.60 -0.35 -1.28 16 24 C -0.20 -2.43 9.04 -39.43 -0.36 -2.78 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.13 1.23 7.94 -52.49 -0.42 0.81 16 30 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.84 7.03 -51.93 -0.37 1.48 16 35 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 36 H 0.09 1.82 5.30 -51.93 -0.28 1.54 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.09 7.45 -51.93 -0.39 0.70 16 40 H 0.13 1.66 7.12 -52.49 -0.37 1.28 16 41 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -34.26 331.20 -8.03 -42.28 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.71 Total: 2.45 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.30 Total: -4.74 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.14 Total: -37.40 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.13 Total: -22.52 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.26 -8.03 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082255002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.482 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds