Wall clock time and date at job start Tue Mar 31 2020 06:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35898 * 117.00269 * 2 1 4 4 C 1.38730 * 120.05841 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94671 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05423 * 0.02738 * 5 4 3 7 7 C 1.50698 * 119.94403 * 179.97438 * 6 5 4 8 8 C 1.53035 * 109.45940 * 239.99470 * 7 6 5 9 9 C 1.53195 * 109.31439 * 178.62726 * 8 7 6 10 10 N 1.46927 * 108.77261 * 54.63651 * 9 8 7 11 11 C 1.34778 * 120.62908 * 126.37184 * 10 9 8 12 12 O 1.21691 * 119.99940 * 5.31170 * 11 10 9 13 13 C 1.46376 * 119.99715 * 185.31439 * 11 10 9 14 14 H 1.07994 * 120.00289 * 353.79813 * 13 11 10 15 15 C 1.40053 * 119.99929 * 173.79489 * 13 11 10 16 16 N 1.30677 * 119.99497 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00102 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47008 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47359 * 300.00359 * 17 15 13 20 20 H 1.48501 * 109.46967 * 60.00265 * 17 15 13 21 21 C 1.46928 * 118.73768 * 306.64092 * 10 9 8 22 22 C 1.52761 * 109.00758 * 53.31374 * 21 10 9 23 23 C 1.38271 * 120.11172 * 0.24303 * 6 5 4 24 24 C 1.38145 * 120.05355 * 359.45717 * 23 6 5 25 25 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47308 * 300.00847 * 1 2 3 27 27 H 1.09002 * 109.46935 * 60.00461 * 1 2 3 28 28 H 1.08004 * 120.03076 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97071 * 179.97438 * 5 4 3 30 30 H 1.08999 * 109.46062 * 359.96584 * 7 6 5 31 31 H 1.09002 * 109.50125 * 58.67639 * 8 7 6 32 32 H 1.09003 * 109.49982 * 298.58325 * 8 7 6 33 33 H 1.09001 * 109.58659 * 294.85117 * 9 8 7 34 34 H 1.08994 * 109.70407 * 174.49410 * 9 8 7 35 35 H 0.97003 * 119.99185 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58270 * 173.14473 * 21 10 9 37 37 H 1.08996 * 109.58751 * 293.57175 * 21 10 9 38 38 H 1.08994 * 109.56648 * 185.54605 * 22 21 10 39 39 H 1.09006 * 109.36054 * 65.49342 * 22 21 10 40 40 H 1.07992 * 119.96933 * 179.70878 * 23 6 5 41 41 H 1.07996 * 120.02688 * 180.24605 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 6 3.5743 5.7994 1.2528 9 6 4.2980 7.1496 1.2680 10 7 4.0251 7.8467 0.0038 11 6 3.5315 9.1008 0.0039 12 8 3.3985 9.7023 1.0533 13 6 3.1554 9.7393 -1.2585 14 1 3.3656 9.2469 -2.1963 15 6 2.5230 10.9889 -1.2500 16 7 2.2692 11.5849 -0.1151 17 14 2.0438 11.8041 -2.8609 18 1 1.3936 13.1096 -2.5808 19 1 3.2590 12.0226 -3.6859 20 1 1.0970 10.9279 -3.5965 21 6 4.2948 7.1483 -1.2605 22 6 3.5763 5.8003 -1.2474 23 6 1.9211 3.6048 0.0068 24 6 1.2915 2.3751 0.0000 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 4.0209 0.3799 0.0014 29 1 5.1345 2.5749 0.0019 30 1 5.0667 4.8754 0.0037 31 1 3.8454 5.2313 2.1426 32 1 2.4968 5.9643 1.2402 33 1 5.3709 6.9879 1.3719 34 1 3.9366 7.7508 2.1023 35 1 1.8315 12.4506 -0.1093 36 1 3.9290 7.7477 -2.0942 37 1 5.3674 6.9866 -1.3669 38 1 3.8488 5.2328 -2.1371 39 1 2.4988 5.9652 -1.2364 40 1 1.3343 4.5113 0.0119 41 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082255002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:06 Heat of formation + Delta-G solvation = -77.273835 kcal Electronic energy + Delta-G solvation = -22652.612255 eV Core-core repulsion = 19303.416928 eV Total energy + Delta-G solvation = -3349.195327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24739 -40.26845 -38.80952 -37.22117 -34.68736 -33.91976 -32.03939 -31.97357 -30.36467 -28.52790 -27.95029 -25.56972 -24.02039 -23.82479 -22.61619 -21.58491 -20.26913 -19.08504 -18.45261 -17.79070 -17.12842 -16.61964 -16.49469 -16.09930 -15.85087 -15.47782 -15.35376 -14.95519 -14.87838 -14.49592 -14.31300 -14.04851 -13.63074 -13.45035 -13.30908 -13.25067 -12.93947 -12.77313 -12.68473 -12.45680 -12.15294 -11.98367 -11.96195 -11.91059 -11.67887 -11.29086 -11.17671 -10.90866 -9.91444 -9.76184 -9.04649 -8.98996 -8.27874 -6.82029 0.42986 0.47912 1.39886 1.43459 1.54771 2.24557 2.41004 2.47716 2.81465 2.89629 3.57443 3.77627 3.82315 3.96772 4.03807 4.10202 4.32772 4.32810 4.38282 4.43536 4.47704 4.49461 4.53976 4.69800 4.73617 4.76164 4.87783 4.98628 5.00008 5.07313 5.10020 5.14461 5.20082 5.36689 5.41410 5.44880 5.48642 5.79129 5.83506 5.86062 6.17515 6.45283 6.47040 6.89389 7.45998 8.49163 8.69089 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.003432 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.218151 B = 8157.696430 C = 8604.028714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.107 3.893 4 C -0.158 4.158 5 C -0.075 4.075 6 C -0.111 4.111 7 C -0.032 4.032 8 C -0.110 4.110 9 C 0.118 3.882 10 N -0.645 5.645 11 C 0.541 3.459 12 O -0.636 6.636 13 C -0.570 4.570 14 H 0.095 0.905 15 C 0.028 3.972 16 N -0.825 5.825 17 Si 0.995 3.005 18 H -0.276 1.276 19 H -0.253 1.253 20 H -0.253 1.253 21 C 0.117 3.883 22 C -0.115 4.115 23 C -0.085 4.085 24 C -0.210 4.210 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.273 0.727 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 -22.238 -4.218 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.062 3.938 4 C -0.177 4.177 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.050 4.050 8 C -0.148 4.148 9 C -0.006 4.006 10 N -0.381 5.381 11 C 0.347 3.653 12 O -0.524 6.524 13 C -0.606 4.606 14 H 0.112 0.888 15 C -0.187 4.187 16 N -0.455 5.455 17 Si 0.814 3.186 18 H -0.201 1.201 19 H -0.177 1.177 20 H -0.177 1.177 21 C -0.006 4.006 22 C -0.154 4.154 23 C -0.103 4.103 24 C -0.229 4.229 25 H 0.138 0.862 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.161 0.839 29 H 0.169 0.831 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.133 0.867 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.485 -21.978 -3.545 22.268 hybrid contribution -0.728 0.943 -0.155 1.201 sum -1.212 -21.036 -3.699 21.393 Atomic orbital electron populations 1.23293 0.76830 1.05445 1.01942 1.86023 1.23126 1.26834 1.88878 1.19224 0.92915 0.84310 0.97316 1.20656 0.91378 0.99259 1.06378 1.21115 1.00856 0.90226 0.97041 1.19814 0.93458 0.94952 1.02944 1.20003 1.00308 0.90525 0.94201 1.21859 0.99463 0.94672 0.98818 1.21256 0.98888 0.92800 0.87649 1.48060 1.69004 1.14960 1.06109 1.18658 0.76418 0.79978 0.90286 1.90533 1.60925 1.64968 1.35928 1.21493 1.41587 1.04752 0.92779 0.88752 1.27007 0.93126 0.97146 1.01411 1.70199 1.31609 1.14061 1.29636 0.85119 0.79522 0.77329 0.76649 1.20108 1.17705 1.17673 1.21553 0.99238 0.93032 0.86804 1.21854 0.99998 0.95113 0.98397 1.20910 0.94691 0.97082 0.97611 1.21360 1.00757 0.92018 1.08759 0.86155 0.92218 0.92116 0.83885 0.83096 0.88756 0.89832 0.93820 0.91962 0.93641 0.91706 0.90172 0.91757 0.89061 0.93377 0.86749 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.78 10.50 -92.40 -0.97 -7.75 16 3 C 0.11 2.37 6.69 22.51 0.15 2.52 16 4 C -0.16 -3.22 9.99 22.37 0.22 -3.00 16 5 C -0.07 -1.49 9.66 22.25 0.22 -1.27 16 6 C -0.11 -2.63 4.78 -19.85 -0.09 -2.73 16 7 C -0.03 -0.82 2.32 -11.51 -0.03 -0.85 16 8 C -0.11 -3.42 5.15 30.67 0.16 -3.26 16 9 C 0.12 4.68 6.42 86.36 0.55 5.23 16 10 N -0.64 -29.71 2.98 -824.81 -2.46 -32.17 16 11 C 0.54 32.01 7.61 86.36 0.66 32.66 16 12 O -0.64 -43.70 14.48 -4.32 -0.06 -43.76 16 13 C -0.57 -32.39 8.87 24.83 0.22 -32.17 16 14 H 0.09 4.76 5.65 -2.91 -0.02 4.74 16 15 C 0.03 1.56 5.50 85.30 0.47 2.03 16 16 N -0.83 -51.30 11.85 21.84 0.26 -51.05 16 17 Si 0.99 41.04 29.56 68.60 2.03 43.07 16 18 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 21 C 0.12 4.15 6.32 86.22 0.54 4.70 16 22 C -0.12 -3.31 5.14 30.53 0.16 -3.15 16 23 C -0.08 -2.11 8.73 22.26 0.19 -1.92 16 24 C -0.21 -4.68 9.04 22.37 0.20 -4.48 16 25 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 27 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 28 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.15 2.25 7.94 -2.91 -0.02 2.23 16 30 H 0.09 2.10 7.87 -2.39 -0.02 2.08 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.04 1.53 7.42 -2.39 -0.02 1.51 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 34 H 0.04 2.14 7.03 -2.39 -0.02 2.12 16 35 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 36 H 0.08 3.05 5.30 -2.39 -0.01 3.04 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.56 7.45 -2.38 -0.02 1.54 16 40 H 0.11 3.05 7.12 -2.91 -0.02 3.03 16 41 H 0.14 2.55 6.30 -2.91 -0.02 2.53 16 Total: -1.00 -78.42 331.20 4.57 -73.85 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.03 Total: 22.13 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 4.74 Total: -4.31 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -2.20 Total: -83.21 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -1.03 Total: -51.51 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -78.42 4.57 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082255002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.425 kcal (2) G-P(sol) polarization free energy of solvation -78.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds