Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00519 * 2 1 4 4 C 1.52997 * 109.46952 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47686 * 66.81984 * 4 3 2 6 6 C 1.46496 * 119.99816 * 272.84858 * 5 4 3 7 7 C 1.50697 * 109.47893 * 89.99581 * 6 5 4 8 8 H 1.08001 * 119.99527 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00412 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99781 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99898 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47566 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47081 * 119.99811 * 11 9 7 14 14 H 1.48498 * 109.47258 * 239.99549 * 11 9 7 15 15 C 1.34780 * 120.00124 * 92.84214 * 5 4 3 16 16 O 1.21281 * 120.00024 * 5.33119 * 15 5 4 17 17 C 1.50692 * 119.99759 * 185.33388 * 15 5 4 18 18 H 1.09005 * 112.51527 * 43.86021 * 17 15 5 19 19 C 1.52886 * 113.16502 * 173.76263 * 17 15 5 20 20 C 1.51428 * 84.73169 * 115.22278 * 19 17 15 21 21 C 1.38957 * 145.53021 * 179.97438 * 20 19 17 22 22 C 1.37972 * 120.32500 * 180.02562 * 21 20 19 23 23 C 1.38242 * 120.17379 * 359.97438 * 22 21 20 24 24 C 1.38171 * 119.75182 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.12588 * 0.02562 * 24 23 22 26 26 H 1.09007 * 109.46648 * 59.99762 * 1 2 3 27 27 H 1.08995 * 109.47742 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46750 * 300.00407 * 1 2 3 29 29 H 1.08998 * 109.46786 * 300.00053 * 3 2 1 30 30 H 1.08993 * 109.46909 * 59.99752 * 3 2 1 31 31 H 1.09005 * 109.46739 * 186.81733 * 4 3 2 32 32 H 1.09003 * 109.47279 * 306.81491 * 4 3 2 33 33 H 1.09010 * 109.47061 * 210.00267 * 6 5 4 34 34 H 1.09004 * 109.47168 * 329.99272 * 6 5 4 35 35 H 0.97001 * 119.99445 * 180.02562 * 10 9 7 36 36 H 1.09006 * 113.99311 * 229.16478 * 19 17 15 37 37 H 1.08997 * 113.98808 * 1.27900 * 19 17 15 38 38 H 1.07995 * 119.83789 * 0.02562 * 21 20 19 39 39 H 1.08000 * 119.91550 * 179.97438 * 22 21 20 40 40 H 1.08011 * 120.12048 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.93357 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9789 0.6041 -1.2706 6 6 4.0488 -0.8509 -1.4262 7 6 2.7294 -1.3651 -1.9417 8 1 1.9198 -0.6767 -2.1345 9 6 2.5557 -2.7141 -2.1671 10 7 3.5417 -3.5522 -1.9327 11 14 0.9204 -3.3512 -2.8067 12 1 -0.0172 -2.2141 -2.9881 13 1 1.1300 -4.0331 -4.1091 14 1 0.3481 -4.3132 -1.8309 15 6 4.3225 1.4088 -2.2958 16 8 4.3577 2.6107 -2.1378 17 6 4.6627 0.8150 -3.6383 18 1 3.9679 0.0294 -3.9355 19 6 4.8810 1.8688 -4.7242 20 6 6.3062 1.3573 -4.7385 21 6 7.5653 1.4900 -5.3111 22 6 8.6049 0.6796 -4.9034 23 6 8.4008 -0.2709 -3.9206 24 6 7.1509 -0.4072 -3.3477 25 6 6.1083 0.4033 -3.7561 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 1.6887 1.8463 0.8899 31 1 3.9784 2.1730 0.1213 32 1 3.8494 0.5417 0.8218 33 1 4.8386 -1.1031 -2.1339 34 1 4.2656 -1.3095 -0.4614 35 1 3.4196 -4.5013 -2.0916 36 1 4.3317 1.6760 -5.6458 37 1 4.7822 2.8955 -4.3716 38 1 7.7309 2.2310 -6.0790 39 1 9.5807 0.7882 -5.3533 40 1 9.2151 -0.9051 -3.6024 41 1 6.9882 -1.1486 -2.5793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090984479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -11.251900 kcal Electronic energy + Delta-G solvation = -23716.116329 eV Core-core repulsion = 20369.783928 eV Total energy + Delta-G solvation = -3346.332401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63099 -38.57638 -37.08055 -35.04132 -34.67360 -32.49168 -30.56838 -29.72724 -27.28067 -26.90924 -25.79909 -24.71491 -22.80952 -22.45611 -21.34714 -20.08275 -18.08754 -16.81852 -16.76376 -16.25196 -15.58979 -15.52194 -15.02989 -14.62957 -14.55493 -14.43533 -14.18622 -13.51717 -13.48175 -12.75258 -12.47107 -12.35713 -12.19169 -11.95263 -11.75098 -11.52756 -11.44255 -11.32259 -11.24215 -10.83856 -10.79130 -10.60249 -10.44570 -10.08331 -9.99320 -9.55687 -9.28068 -8.89836 -8.47976 -8.40919 -8.17598 -7.68870 -6.01969 -4.01470 1.62269 1.70852 3.25756 3.27975 3.36962 3.39858 3.88277 4.11760 4.44154 4.46799 4.57240 4.76331 5.03329 5.27884 5.31908 5.36834 5.41582 5.60073 5.68917 5.77248 5.83963 5.87468 5.89514 5.91874 5.96785 6.01024 6.11854 6.20632 6.22563 6.35131 6.40505 6.54337 6.67016 6.77989 6.85294 7.11188 7.27912 7.32324 7.60069 7.83847 7.94745 8.23112 8.37574 8.90357 9.07183 9.60851 11.06604 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.006263 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.396822 B = 4469.953505 C = 5489.541282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.343 6.343 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.586 5.586 6 C 0.238 3.762 7 C -0.497 4.497 8 H 0.066 0.934 9 C 0.060 3.940 10 N -0.899 5.899 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.533 3.467 16 O -0.575 6.575 17 C -0.062 4.062 18 H 0.132 0.868 19 C -0.063 4.063 20 C -0.123 4.123 21 C -0.106 4.106 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.080 4.080 25 C -0.100 4.100 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.026 0.974 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.148 7.337 -1.826 8.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.261 6.261 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.119 3.881 7 C -0.536 4.536 8 H 0.084 0.916 9 C -0.141 4.141 10 N -0.539 5.539 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.212 1.212 15 C 0.321 3.679 16 O -0.457 6.457 17 C -0.082 4.082 18 H 0.150 0.850 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.098 4.098 25 C -0.100 4.100 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.333 7.555 -1.717 8.434 hybrid contribution -1.204 -0.594 -0.255 1.367 sum 2.129 6.960 -1.972 7.541 Atomic orbital electron populations 1.22591 0.83241 1.02047 0.98353 1.88368 1.17526 1.25366 1.94810 1.22847 0.94879 0.86122 0.99053 1.21329 0.92181 0.99567 0.87131 1.48174 1.62492 1.09747 1.11098 1.19517 0.98008 0.72426 0.98190 1.21434 0.98062 0.92253 1.41891 0.91560 1.24856 0.96362 0.96820 0.96054 1.69929 1.31336 1.03021 1.49626 0.86584 0.84482 0.78807 0.78361 1.19854 1.21331 1.21197 1.19967 0.76289 0.86084 0.85591 1.90563 1.56025 1.15201 1.83885 1.21325 0.94331 0.98861 0.93717 0.85047 1.21750 0.89999 1.00296 0.97934 1.22422 0.94951 0.97674 0.97268 1.20438 0.91584 0.99970 1.00429 1.20874 0.98356 0.96655 0.98301 1.20965 0.96543 0.99030 0.97491 1.20394 0.91179 0.98388 0.99826 1.21252 0.94876 0.96334 0.97563 0.95030 0.90239 0.95509 0.93835 0.94029 0.89562 0.90304 0.94254 0.94791 0.93043 0.88771 0.87526 0.86889 0.86229 0.85826 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.34 -6.90 7.42 -35.23 -0.26 -7.16 16 3 C 0.05 0.87 6.27 37.16 0.23 1.10 16 4 C 0.12 2.25 5.93 -4.04 -0.02 2.23 16 5 N -0.59 -12.38 2.45 -175.06 -0.43 -12.81 16 6 C 0.24 5.64 4.74 -5.20 -0.02 5.61 16 7 C -0.50 -12.65 6.90 -34.44 -0.24 -12.89 16 8 H 0.07 1.73 6.78 -52.49 -0.36 1.37 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -24.91 13.29 55.43 0.74 -24.18 16 11 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.53 11.19 7.15 -10.99 -0.08 11.11 16 16 O -0.57 -12.76 15.20 5.56 0.08 -12.67 16 17 C -0.06 -1.19 2.89 -96.59 -0.28 -1.46 16 18 H 0.13 2.69 7.27 -51.93 -0.38 2.31 16 19 C -0.06 -1.02 7.91 -27.58 -0.22 -1.24 16 20 C -0.12 -2.07 7.32 -107.59 -0.79 -2.86 16 21 C -0.11 -1.55 10.05 -39.41 -0.40 -1.95 16 22 C -0.12 -1.69 10.03 -39.68 -0.40 -2.09 16 23 C -0.12 -1.80 10.06 -39.60 -0.40 -2.20 16 24 C -0.08 -1.40 9.72 -39.61 -0.38 -1.79 16 25 C -0.10 -1.86 6.26 -104.55 -0.65 -2.52 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.51 7.28 -51.93 -0.38 1.13 16 32 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 33 H 0.04 0.96 5.38 -51.92 -0.28 0.68 16 34 H 0.03 0.87 7.92 -51.93 -0.41 0.46 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.11 1.77 7.03 -51.93 -0.37 1.41 16 38 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 41 H 0.13 2.25 7.48 -52.49 -0.39 1.86 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -29.88 339.29 -8.32 -38.20 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.91 Total: 3.52 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.63 Total: -5.77 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.31 Total: -36.99 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.18 Total: -19.83 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.88 -8.32 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090984479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.951 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds