Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00519 * 2 1 4 4 C 1.52997 * 109.46952 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47686 * 66.81984 * 4 3 2 6 6 C 1.46496 * 119.99816 * 272.84858 * 5 4 3 7 7 C 1.50697 * 109.47893 * 89.99581 * 6 5 4 8 8 H 1.08001 * 119.99527 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00412 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99781 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99898 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47566 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47081 * 119.99811 * 11 9 7 14 14 H 1.48498 * 109.47258 * 239.99549 * 11 9 7 15 15 C 1.34780 * 120.00124 * 92.84214 * 5 4 3 16 16 O 1.21281 * 120.00024 * 5.33119 * 15 5 4 17 17 C 1.50692 * 119.99759 * 185.33388 * 15 5 4 18 18 H 1.09005 * 112.51527 * 43.86021 * 17 15 5 19 19 C 1.52886 * 113.16502 * 173.76263 * 17 15 5 20 20 C 1.51428 * 84.73169 * 115.22278 * 19 17 15 21 21 C 1.38957 * 145.53021 * 179.97438 * 20 19 17 22 22 C 1.37972 * 120.32500 * 180.02562 * 21 20 19 23 23 C 1.38242 * 120.17379 * 359.97438 * 22 21 20 24 24 C 1.38171 * 119.75182 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.12588 * 0.02562 * 24 23 22 26 26 H 1.09007 * 109.46648 * 59.99762 * 1 2 3 27 27 H 1.08995 * 109.47742 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46750 * 300.00407 * 1 2 3 29 29 H 1.08998 * 109.46786 * 300.00053 * 3 2 1 30 30 H 1.08993 * 109.46909 * 59.99752 * 3 2 1 31 31 H 1.09005 * 109.46739 * 186.81733 * 4 3 2 32 32 H 1.09003 * 109.47279 * 306.81491 * 4 3 2 33 33 H 1.09010 * 109.47061 * 210.00267 * 6 5 4 34 34 H 1.09004 * 109.47168 * 329.99272 * 6 5 4 35 35 H 0.97001 * 119.99445 * 180.02562 * 10 9 7 36 36 H 1.09006 * 113.99311 * 229.16478 * 19 17 15 37 37 H 1.08997 * 113.98808 * 1.27900 * 19 17 15 38 38 H 1.07995 * 119.83789 * 0.02562 * 21 20 19 39 39 H 1.08000 * 119.91550 * 179.97438 * 22 21 20 40 40 H 1.08011 * 120.12048 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.93357 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9789 0.6041 -1.2706 6 6 4.0488 -0.8509 -1.4262 7 6 2.7294 -1.3651 -1.9417 8 1 1.9198 -0.6767 -2.1345 9 6 2.5557 -2.7141 -2.1671 10 7 3.5417 -3.5522 -1.9327 11 14 0.9204 -3.3512 -2.8067 12 1 -0.0172 -2.2141 -2.9881 13 1 1.1300 -4.0331 -4.1091 14 1 0.3481 -4.3132 -1.8309 15 6 4.3225 1.4088 -2.2958 16 8 4.3577 2.6107 -2.1378 17 6 4.6627 0.8150 -3.6383 18 1 3.9679 0.0294 -3.9355 19 6 4.8810 1.8688 -4.7242 20 6 6.3062 1.3573 -4.7385 21 6 7.5653 1.4900 -5.3111 22 6 8.6049 0.6796 -4.9034 23 6 8.4008 -0.2709 -3.9206 24 6 7.1509 -0.4072 -3.3477 25 6 6.1083 0.4033 -3.7561 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 1.6887 1.8463 0.8899 31 1 3.9784 2.1730 0.1213 32 1 3.8494 0.5417 0.8218 33 1 4.8386 -1.1031 -2.1339 34 1 4.2656 -1.3095 -0.4614 35 1 3.4196 -4.5013 -2.0916 36 1 4.3317 1.6760 -5.6458 37 1 4.7822 2.8955 -4.3716 38 1 7.7309 2.2310 -6.0790 39 1 9.5807 0.7882 -5.3533 40 1 9.2151 -0.9051 -3.6024 41 1 6.9882 -1.1486 -2.5793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090984479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -27.191680 kcal Electronic energy + Delta-G solvation = -23716.807530 eV Core-core repulsion = 20369.783928 eV Total energy + Delta-G solvation = -3347.023602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03646 -40.08167 -38.55877 -36.63536 -36.10982 -34.46334 -31.86239 -31.21803 -28.92541 -28.44455 -27.17298 -26.12530 -24.73709 -23.85666 -22.67113 -21.37544 -19.66780 -18.68414 -18.35313 -17.60971 -17.18809 -17.04227 -16.42805 -16.30747 -16.07423 -15.97233 -15.46437 -15.09472 -14.92401 -14.21489 -13.89871 -13.84672 -13.67606 -13.45730 -13.24320 -13.12264 -12.91338 -12.82983 -12.69393 -12.67523 -12.51675 -12.04437 -11.86947 -11.83380 -11.46292 -11.41087 -10.85994 -10.46852 -10.35205 -9.71870 -9.48201 -9.42876 -8.06224 -6.10894 0.39881 0.47709 1.40583 1.43555 1.53051 1.63447 2.29251 2.50623 2.86715 3.04457 3.24539 3.29899 3.51811 3.65709 3.80679 4.20953 4.23569 4.25158 4.26317 4.39929 4.46745 4.54664 4.58615 4.63962 4.69039 4.75289 4.84895 4.86239 4.88863 4.97441 5.01363 5.10824 5.21929 5.30828 5.50766 5.60016 5.78437 5.84430 5.89424 6.11495 6.22311 6.45060 6.61095 6.96674 7.27654 7.54658 9.01710 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.006263 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.396822 B = 4469.953505 C = 5489.541282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.055 3.945 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.257 3.743 7 C -0.488 4.488 8 H 0.060 0.940 9 C 0.013 3.987 10 N -0.931 5.931 11 Si 0.944 3.056 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.530 3.470 16 O -0.588 6.588 17 C -0.070 4.070 18 H 0.109 0.891 19 C -0.050 4.050 20 C -0.131 4.131 21 C -0.106 4.106 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.138 4.138 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.260 0.740 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 8.483 -2.883 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.023 4.023 4 C -0.008 4.008 5 N -0.320 5.320 6 C 0.137 3.863 7 C -0.527 4.527 8 H 0.078 0.922 9 C -0.184 4.184 10 N -0.573 5.573 11 Si 0.771 3.229 12 H -0.190 1.190 13 H -0.212 1.212 14 H -0.211 1.211 15 C 0.319 3.681 16 O -0.471 6.471 17 C -0.091 4.091 18 H 0.127 0.873 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.123 4.123 25 C -0.139 4.139 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.168 0.832 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.781 8.721 -2.767 9.900 hybrid contribution -1.279 -0.918 0.110 1.578 sum 2.502 7.803 -2.658 8.615 Atomic orbital electron populations 1.22720 0.81567 1.02325 0.99946 1.88292 1.19564 1.26799 1.95107 1.22834 0.93852 0.85521 1.00103 1.21548 0.93283 0.99940 0.86078 1.48159 1.62759 1.08726 1.12327 1.19090 0.97043 0.73900 0.96294 1.21509 0.98206 0.92102 1.40865 0.92209 1.25516 0.99152 0.97173 0.96579 1.70036 1.33024 1.03157 1.51046 0.85707 0.81188 0.78315 0.77660 1.19032 1.21246 1.21064 1.20303 0.75676 0.85921 0.86187 1.90534 1.56700 1.15561 1.84343 1.21352 0.94737 0.99422 0.93595 0.87322 1.21706 0.90310 0.98962 0.97696 1.22530 0.96023 0.97282 0.97242 1.20869 0.90569 1.00405 1.00497 1.21369 0.99834 0.94936 0.96962 1.21317 0.95830 0.99521 0.97228 1.20502 0.92665 0.98612 1.00506 1.21335 0.94647 0.98335 0.99583 0.94904 0.90684 0.92359 0.95059 0.90437 0.88479 0.89994 0.95360 0.97179 0.93138 0.86366 0.87893 0.83671 0.82106 0.83173 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 11.01 113.37 1.25 2.24 16 2 O -0.38 -15.13 7.42 -148.98 -1.10 -16.23 16 3 C 0.05 1.90 6.27 71.98 0.45 2.35 16 4 C 0.11 4.26 5.93 86.38 0.51 4.77 16 5 N -0.59 -25.74 2.45 -826.16 -2.02 -27.76 16 6 C 0.26 12.74 4.74 85.63 0.41 13.15 16 7 C -0.49 -25.47 6.90 25.60 0.18 -25.29 16 8 H 0.06 3.17 6.78 -2.91 -0.02 3.15 16 9 C 0.01 0.72 5.46 84.65 0.46 1.19 16 10 N -0.93 -52.99 13.29 21.45 0.28 -52.71 16 11 Si 0.94 43.07 29.54 68.60 2.03 45.09 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 C 0.53 22.83 7.15 87.65 0.63 23.45 16 16 O -0.59 -26.33 15.20 -3.03 -0.05 -26.37 16 17 C -0.07 -2.78 2.89 -14.66 -0.04 -2.82 16 18 H 0.11 4.70 7.27 -2.38 -0.02 4.68 16 19 C -0.05 -1.60 7.91 30.04 0.24 -1.36 16 20 C -0.13 -4.27 7.32 -21.78 -0.16 -4.43 16 21 C -0.11 -2.77 10.05 22.38 0.22 -2.55 16 22 C -0.11 -2.70 10.03 22.21 0.22 -2.48 16 23 C -0.12 -3.37 10.06 22.25 0.22 -3.14 16 24 C -0.10 -3.77 9.72 22.25 0.22 -3.55 16 25 C -0.14 -5.28 6.26 -19.82 -0.12 -5.40 16 26 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.10 3.38 7.28 -2.38 -0.02 3.36 16 32 H 0.08 2.96 7.93 -2.39 -0.02 2.94 16 33 H 0.03 1.47 5.38 -2.38 -0.01 1.46 16 34 H 0.01 0.55 7.92 -2.38 -0.02 0.53 16 35 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.12 3.11 8.14 -2.38 -0.02 3.10 16 37 H 0.10 3.36 7.03 -2.39 -0.02 3.34 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.15 3.26 8.06 -2.90 -0.02 3.23 16 41 H 0.10 4.06 7.48 -2.91 -0.02 4.04 16 Total: -1.00 -65.42 339.29 4.84 -60.58 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 1.02 Total: 21.29 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.68 Total: -3.88 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -1.74 Total: -80.47 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.15 Total: -42.61 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.42 4.84 -60.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090984479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.389 kcal (2) G-P(sol) polarization free energy of solvation -65.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds