Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 119.99637 * 2 1 4 4 C 1.50700 * 109.47110 * 269.99582 * 3 2 1 5 5 O 1.20835 * 119.99600 * 0.02562 * 4 3 2 6 6 O 1.34228 * 120.00368 * 180.02562 * 4 3 2 7 7 C 1.45198 * 117.00205 * 180.02562 * 6 4 3 8 8 C 1.52991 * 109.47075 * 179.97438 * 7 6 4 9 9 C 1.50701 * 115.55544 * 294.88682 * 8 7 6 10 10 H 1.07995 * 119.99892 * 95.15843 * 9 8 7 11 11 C 1.37875 * 119.99625 * 274.89404 * 9 8 7 12 12 N 1.31516 * 120.00645 * 6.38641 * 11 9 8 13 13 Si 1.86804 * 119.99966 * 186.39037 * 11 9 8 14 14 H 1.48497 * 109.46911 * 59.99497 * 13 11 9 15 15 H 1.48501 * 109.47278 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46934 * 299.99733 * 13 11 9 17 17 C 1.52999 * 117.50107 * 80.55676 * 8 7 6 18 18 C 1.53002 * 117.49851 * 149.21518 * 8 7 6 19 19 C 1.39675 * 120.00377 * 179.97438 * 2 1 3 20 20 C 1.38907 * 120.07764 * 179.72346 * 19 2 1 21 21 C 1.38105 * 119.92362 * 179.77274 * 20 19 2 22 22 C 1.38281 * 120.07456 * 0.50648 * 21 20 19 23 23 C 1.38288 * 120.15169 * 359.74480 * 22 21 20 24 24 C 1.38102 * 120.07204 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47584 * 90.00681 * 1 2 3 26 26 H 1.09007 * 109.46832 * 210.00188 * 1 2 3 27 27 H 1.08998 * 109.47683 * 330.00025 * 1 2 3 28 28 H 1.09004 * 109.47197 * 150.00179 * 3 2 1 29 29 H 1.08998 * 109.47207 * 30.00061 * 3 2 1 30 30 H 1.09001 * 109.46840 * 59.99792 * 7 6 4 31 31 H 1.09000 * 109.47129 * 299.99899 * 7 6 4 32 32 H 0.96998 * 120.00543 * 180.02562 * 12 11 9 33 33 H 1.08998 * 117.50651 * 215.00344 * 17 8 7 34 34 H 1.09007 * 117.49575 * 0.02562 * 17 8 7 35 35 H 1.09004 * 117.50100 * 359.97438 * 18 8 7 36 36 H 1.09000 * 117.49932 * 144.97481 * 18 8 7 37 37 H 1.08004 * 120.03345 * 0.02562 * 20 19 2 38 38 H 1.08002 * 119.95781 * 180.25249 * 21 20 19 39 39 H 1.08002 * 119.92144 * 179.72373 * 22 21 20 40 40 H 1.07996 * 119.95996 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.03419 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0557 1.0239 -2.3392 6 8 3.1088 2.8464 -1.6662 7 6 3.3142 3.2032 -3.0586 8 6 4.0781 4.5263 -3.1387 9 6 3.3498 5.7311 -2.6009 10 1 3.5167 6.0533 -1.5837 11 6 2.4745 6.4250 -3.4092 12 7 2.1790 5.9656 -4.6055 13 14 1.7084 8.0180 -2.8051 14 1 2.7806 9.0019 -2.5093 15 1 0.8111 8.5649 -3.8544 16 1 0.9249 7.7539 -1.5715 17 6 5.5961 4.4780 -2.9538 18 6 5.0015 4.7373 -4.3403 19 6 2.1634 -1.2096 0.0005 20 6 3.5525 -1.2114 -0.0053 21 6 4.2399 -2.4092 0.0000 22 6 3.5469 -3.6058 0.0005 23 6 2.1640 -3.6077 0.0010 24 6 1.4704 -2.4135 0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 3.1499 1.1385 0.5138 29 1 1.6083 2.0284 0.5138 30 1 2.3484 3.3112 -3.5522 31 1 3.8895 2.4206 -3.5531 32 1 1.5635 6.4540 -5.1743 33 1 6.0680 5.3174 -2.4432 34 1 6.0506 3.5034 -2.7756 35 1 5.0650 3.9333 -5.0735 36 1 5.0818 5.7474 -4.7420 37 1 4.0942 -0.2771 -0.0098 38 1 5.3199 -2.4112 -0.0003 39 1 4.0870 -4.5411 0.0002 40 1 1.6260 -4.5441 0.0010 41 1 0.3904 -2.4157 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091444380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = -19.468532 kcal Electronic energy + Delta-G solvation = -22616.263382 eV Core-core repulsion = 19269.574681 eV Total energy + Delta-G solvation = -3346.688701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13300 -39.16124 -36.94142 -36.01821 -35.08346 -31.98873 -31.22689 -30.16190 -29.00199 -26.80509 -25.44970 -24.86817 -22.37649 -21.47781 -21.13291 -20.01466 -19.27247 -17.80816 -17.17265 -16.55144 -15.98365 -15.63698 -15.45372 -15.16408 -14.65539 -14.39151 -14.13127 -13.71480 -13.58767 -13.57561 -13.03542 -12.59880 -12.43262 -12.11233 -12.05432 -11.69177 -11.63584 -11.44278 -10.99835 -10.88806 -10.82534 -10.58303 -10.35397 -10.29070 -9.87116 -9.81291 -9.52314 -8.90996 -8.85367 -8.49573 -8.23770 -7.36361 -6.09404 -4.15044 1.45278 1.60767 2.73258 2.80884 3.27620 3.32914 3.35091 3.50712 3.94328 4.36366 4.78153 4.83627 5.00372 5.10633 5.16286 5.20172 5.21232 5.27898 5.42670 5.47099 5.51182 5.60216 5.72857 5.74966 5.97411 5.99547 6.21885 6.24939 6.31514 6.48266 6.51342 6.63053 6.63763 6.70838 6.83756 7.00911 7.11705 7.25074 7.34235 7.42619 7.45474 7.83399 8.33744 8.44425 8.86387 9.50822 10.99937 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.003716 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.295915 B = 7533.991514 C = 8219.572649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.613 5.613 3 C 0.131 3.869 4 C 0.426 3.574 5 O -0.510 6.510 6 O -0.340 6.340 7 C 0.118 3.882 8 C 0.038 3.962 9 C -0.491 4.491 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.881 5.881 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.205 4.205 18 C -0.146 4.146 19 C 0.223 3.777 20 C -0.195 4.195 21 C -0.072 4.072 22 C -0.183 4.183 23 C -0.076 4.076 24 C -0.194 4.194 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -14.229 10.541 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.323 5.323 3 C 0.005 3.995 4 C 0.266 3.734 5 O -0.399 6.399 6 O -0.254 6.254 7 C 0.044 3.956 8 C 0.038 3.962 9 C -0.529 4.529 10 H 0.081 0.919 11 C -0.134 4.134 12 N -0.518 5.518 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.242 4.242 18 C -0.184 4.184 19 C 0.122 3.878 20 C -0.217 4.217 21 C -0.091 4.091 22 C -0.203 4.203 23 C -0.094 4.094 24 C -0.217 4.217 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.788 -14.181 10.055 17.402 hybrid contribution -0.526 0.910 -0.197 1.069 sum -1.314 -13.271 9.858 16.584 Atomic orbital electron populations 1.21712 0.78843 1.02529 1.01911 1.46044 1.05106 1.01923 1.79275 1.20906 1.00313 0.86742 0.91548 1.24433 0.75851 0.79946 0.93145 1.90627 1.48253 1.54352 1.46646 1.86511 1.67419 1.37896 1.33622 1.22867 1.01191 0.95383 0.76114 1.18768 0.86671 0.92126 0.98659 1.20347 1.24554 1.09540 0.98417 0.91897 1.25019 0.95950 0.97568 0.94905 1.69988 1.34271 1.38559 1.08964 0.86647 0.79153 0.83707 0.78444 1.20109 1.21283 1.20141 1.23004 0.99579 1.00132 1.01496 1.22546 1.04869 1.00956 0.89994 1.17808 0.91203 0.85507 0.93237 1.20721 0.92227 0.98852 1.09888 1.20874 0.99448 0.91930 0.96836 1.20877 0.94281 0.97712 1.07400 1.20853 0.94243 0.97030 0.97297 1.20655 0.99614 0.91031 1.10362 0.92815 0.91074 0.91232 0.86801 0.86470 0.90728 0.94475 0.92831 0.90044 0.91561 0.91674 0.89432 0.86257 0.86246 0.86660 0.86379 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.23 59.84 0.61 1.62 16 2 N -0.61 -8.12 2.50 -181.00 -0.45 -8.57 16 3 C 0.13 1.76 5.79 -5.19 -0.03 1.73 16 4 C 0.43 8.03 8.03 36.01 0.29 8.32 16 5 O -0.51 -11.16 16.18 -18.76 -0.30 -11.47 16 6 O -0.34 -7.32 10.16 -39.25 -0.40 -7.72 16 7 C 0.12 2.81 5.29 37.15 0.20 3.01 16 8 C 0.04 0.95 1.61 -155.66 -0.25 0.70 16 9 C -0.49 -13.26 8.77 -34.44 -0.30 -13.56 16 10 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 11 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 12 N -0.88 -24.79 12.93 55.43 0.72 -24.07 16 13 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 C -0.20 -4.44 9.96 -26.70 -0.27 -4.71 16 18 C -0.15 -3.40 9.43 -26.69 -0.25 -3.65 16 19 C 0.22 3.05 6.55 -83.79 -0.55 2.50 16 20 C -0.19 -2.61 9.20 -39.38 -0.36 -2.97 16 21 C -0.07 -0.86 10.04 -39.61 -0.40 -1.26 16 22 C -0.18 -2.02 10.04 -39.55 -0.40 -2.42 16 23 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 24 C -0.19 -2.37 9.21 -39.38 -0.36 -2.73 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.62 6.20 -51.92 -0.32 0.30 16 27 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 28 H 0.11 1.31 6.21 -51.93 -0.32 0.99 16 29 H 0.12 1.31 7.89 -51.93 -0.41 0.90 16 30 H 0.07 1.98 8.13 -51.93 -0.42 1.56 16 31 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 37 H 0.12 1.55 6.15 -52.48 -0.32 1.22 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.27 6.14 -52.49 -0.32 0.94 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.52 349.91 -8.63 -40.15 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.88 Total: 3.48 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.56 Total: -12.87 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.26 Total: -32.65 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.70 Total: -19.18 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.52 -8.63 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091444380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.677 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds