Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 119.99637 * 2 1 4 4 C 1.50700 * 109.47110 * 269.99582 * 3 2 1 5 5 O 1.20835 * 119.99600 * 0.02562 * 4 3 2 6 6 O 1.34228 * 120.00368 * 180.02562 * 4 3 2 7 7 C 1.45198 * 117.00205 * 180.02562 * 6 4 3 8 8 C 1.52991 * 109.47075 * 179.97438 * 7 6 4 9 9 C 1.50701 * 115.55544 * 294.88682 * 8 7 6 10 10 H 1.07995 * 119.99892 * 95.15843 * 9 8 7 11 11 C 1.37875 * 119.99625 * 274.89404 * 9 8 7 12 12 N 1.31516 * 120.00645 * 6.38641 * 11 9 8 13 13 Si 1.86804 * 119.99966 * 186.39037 * 11 9 8 14 14 H 1.48497 * 109.46911 * 59.99497 * 13 11 9 15 15 H 1.48501 * 109.47278 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.46934 * 299.99733 * 13 11 9 17 17 C 1.52999 * 117.50107 * 80.55676 * 8 7 6 18 18 C 1.53002 * 117.49851 * 149.21518 * 8 7 6 19 19 C 1.39675 * 120.00377 * 179.97438 * 2 1 3 20 20 C 1.38907 * 120.07764 * 179.72346 * 19 2 1 21 21 C 1.38105 * 119.92362 * 179.77274 * 20 19 2 22 22 C 1.38281 * 120.07456 * 0.50648 * 21 20 19 23 23 C 1.38288 * 120.15169 * 359.74480 * 22 21 20 24 24 C 1.38102 * 120.07204 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47584 * 90.00681 * 1 2 3 26 26 H 1.09007 * 109.46832 * 210.00188 * 1 2 3 27 27 H 1.08998 * 109.47683 * 330.00025 * 1 2 3 28 28 H 1.09004 * 109.47197 * 150.00179 * 3 2 1 29 29 H 1.08998 * 109.47207 * 30.00061 * 3 2 1 30 30 H 1.09001 * 109.46840 * 59.99792 * 7 6 4 31 31 H 1.09000 * 109.47129 * 299.99899 * 7 6 4 32 32 H 0.96998 * 120.00543 * 180.02562 * 12 11 9 33 33 H 1.08998 * 117.50651 * 215.00344 * 17 8 7 34 34 H 1.09007 * 117.49575 * 0.02562 * 17 8 7 35 35 H 1.09004 * 117.50100 * 359.97438 * 18 8 7 36 36 H 1.09000 * 117.49932 * 144.97481 * 18 8 7 37 37 H 1.08004 * 120.03345 * 0.02562 * 20 19 2 38 38 H 1.08002 * 119.95781 * 180.25249 * 21 20 19 39 39 H 1.08002 * 119.92144 * 179.72373 * 22 21 20 40 40 H 1.07996 * 119.95996 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.03419 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0557 1.0239 -2.3392 6 8 3.1088 2.8464 -1.6662 7 6 3.3142 3.2032 -3.0586 8 6 4.0781 4.5263 -3.1387 9 6 3.3498 5.7311 -2.6009 10 1 3.5167 6.0533 -1.5837 11 6 2.4745 6.4250 -3.4092 12 7 2.1790 5.9656 -4.6055 13 14 1.7084 8.0180 -2.8051 14 1 2.7806 9.0019 -2.5093 15 1 0.8111 8.5649 -3.8544 16 1 0.9249 7.7539 -1.5715 17 6 5.5961 4.4780 -2.9538 18 6 5.0015 4.7373 -4.3403 19 6 2.1634 -1.2096 0.0005 20 6 3.5525 -1.2114 -0.0053 21 6 4.2399 -2.4092 0.0000 22 6 3.5469 -3.6058 0.0005 23 6 2.1640 -3.6077 0.0010 24 6 1.4704 -2.4135 0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 3.1499 1.1385 0.5138 29 1 1.6083 2.0284 0.5138 30 1 2.3484 3.3112 -3.5522 31 1 3.8895 2.4206 -3.5531 32 1 1.5635 6.4540 -5.1743 33 1 6.0680 5.3174 -2.4432 34 1 6.0506 3.5034 -2.7756 35 1 5.0650 3.9333 -5.0735 36 1 5.0818 5.7474 -4.7420 37 1 4.0942 -0.2771 -0.0098 38 1 5.3199 -2.4112 -0.0003 39 1 4.0870 -4.5411 0.0002 40 1 1.6260 -4.5441 0.0010 41 1 0.3904 -2.4157 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091444380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = -34.951706 kcal Electronic energy + Delta-G solvation = -22616.934783 eV Core-core repulsion = 19269.574681 eV Total energy + Delta-G solvation = -3347.360102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53248 -40.28748 -38.63421 -37.26197 -36.63226 -34.03784 -32.15667 -31.14770 -30.06382 -28.49057 -27.31739 -26.03553 -23.37544 -23.01313 -22.49669 -21.26890 -21.17751 -18.85116 -18.64287 -18.32562 -17.42050 -17.16336 -16.59510 -16.48333 -16.32227 -15.72181 -15.34946 -15.03914 -14.76037 -14.58796 -14.40762 -14.01871 -13.73754 -13.52248 -13.49063 -12.99130 -12.92103 -12.84967 -12.78797 -12.42144 -12.28866 -12.11364 -11.80598 -11.70284 -11.67121 -11.48232 -10.83665 -10.79066 -10.50014 -10.10261 -9.80843 -8.33561 -8.14674 -6.26530 0.55238 0.67854 1.23980 1.42623 1.43856 1.51515 1.64340 2.24837 2.41926 3.02058 3.14320 3.40609 3.80639 3.87095 3.96310 4.11992 4.12982 4.26881 4.36147 4.36633 4.39513 4.45300 4.60043 4.63909 4.64187 4.71051 4.81052 4.84235 4.89192 4.94368 5.15268 5.15815 5.33623 5.43809 5.55840 5.61428 5.70418 5.73727 5.75475 5.96303 6.16231 6.34345 6.48736 6.79014 6.85706 7.42553 8.94086 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.003716 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.295915 B = 7533.991514 C = 8219.572649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.139 3.861 4 C 0.423 3.577 5 O -0.546 6.546 6 O -0.347 6.347 7 C 0.132 3.868 8 C 0.006 3.994 9 C -0.505 4.505 10 H 0.059 0.941 11 C 0.022 3.978 12 N -0.912 5.912 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.270 1.270 17 C -0.176 4.176 18 C -0.150 4.150 19 C 0.199 3.801 20 C -0.216 4.216 21 C -0.082 4.082 22 C -0.186 4.186 23 C -0.079 4.079 24 C -0.204 4.204 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -15.101 12.369 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.329 5.329 3 C 0.013 3.987 4 C 0.265 3.735 5 O -0.436 6.436 6 O -0.262 6.262 7 C 0.058 3.942 8 C 0.006 3.994 9 C -0.543 4.543 10 H 0.077 0.923 11 C -0.178 4.178 12 N -0.549 5.549 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.195 1.195 17 C -0.213 4.213 18 C -0.188 4.188 19 C 0.099 3.901 20 C -0.239 4.239 21 C -0.101 4.101 22 C -0.205 4.205 23 C -0.098 4.098 24 C -0.226 4.226 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.541 -15.074 11.908 19.217 hybrid contribution -0.587 1.046 -0.757 1.419 sum -1.129 -14.027 11.151 17.955 Atomic orbital electron populations 1.21843 0.77806 1.04626 1.01025 1.46214 1.05846 1.01660 1.79181 1.21134 1.02155 0.87669 0.87772 1.25734 0.74137 0.78414 0.95176 1.90606 1.49578 1.55077 1.48348 1.86525 1.68245 1.39498 1.31931 1.22424 0.99013 0.95354 0.77433 1.18869 0.88406 0.91884 1.00285 1.20623 1.24892 1.10406 0.98339 0.92317 1.25754 0.96466 1.00546 0.95049 1.70111 1.34994 1.39741 1.10061 0.85676 0.78418 0.79990 0.77977 1.19313 1.21251 1.19466 1.23013 0.97147 1.01558 0.99545 1.22483 1.05174 1.00367 0.90743 1.18103 0.91618 0.86157 0.94265 1.20895 0.92522 0.99453 1.10981 1.21179 1.00544 0.91852 0.96505 1.21247 0.94635 0.98420 1.06237 1.21240 0.94556 0.97769 0.96191 1.20943 1.00510 0.91034 1.10151 0.95145 0.88852 0.89362 0.84604 0.83720 0.94577 0.94100 0.93041 0.89348 0.89197 0.90754 0.91108 0.86576 0.84550 0.84283 0.83723 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 10.23 127.77 1.31 3.14 16 2 N -0.62 -15.71 2.50 -726.56 -1.81 -17.52 16 3 C 0.14 3.57 5.79 85.63 0.50 4.06 16 4 C 0.42 16.00 8.03 71.24 0.57 16.57 16 5 O -0.55 -24.44 16.18 21.94 0.35 -24.08 16 6 O -0.35 -15.03 10.16 -51.40 -0.52 -15.55 16 7 C 0.13 6.44 5.29 71.98 0.38 6.82 16 8 C 0.01 0.30 1.61 -52.93 -0.08 0.22 16 9 C -0.51 -27.43 8.77 25.60 0.22 -27.20 16 10 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 11 C 0.02 1.20 5.39 84.65 0.46 1.66 16 12 N -0.91 -52.34 12.93 21.45 0.28 -52.07 16 13 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 C -0.18 -7.39 9.96 30.62 0.30 -7.08 16 18 C -0.15 -7.00 9.43 30.62 0.29 -6.71 16 19 C 0.20 5.23 6.55 38.21 0.25 5.48 16 20 C -0.22 -5.61 9.20 22.40 0.21 -5.41 16 21 C -0.08 -1.83 10.04 22.25 0.22 -1.61 16 22 C -0.19 -3.69 10.04 22.29 0.22 -3.47 16 23 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 24 C -0.20 -4.65 9.21 22.40 0.21 -4.45 16 25 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 1.47 6.20 -2.38 -0.01 1.45 16 27 H 0.09 1.45 7.89 -2.39 -0.02 1.43 16 28 H 0.14 2.91 6.21 -2.39 -0.01 2.90 16 29 H 0.15 2.93 7.89 -2.39 -0.02 2.91 16 30 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.04 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.09 3.34 8.14 -2.38 -0.02 3.33 16 35 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.12 2.95 6.15 -2.91 -0.02 2.93 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.13 2.56 6.14 -2.91 -0.02 2.55 16 Total: -1.00 -68.81 349.91 6.62 -62.19 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.02 Total: 21.50 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 5.28 Total: -19.32 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.54 Total: -69.59 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.17 Total: -39.63 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.81 6.62 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091444380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.242 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds