Wall clock time and date at job start Tue Mar 31 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47138 * 2 1 4 4 C 1.46502 * 120.00159 * 269.99872 * 3 2 1 5 5 C 1.50696 * 109.47254 * 270.00013 * 4 3 2 6 6 H 1.07999 * 119.99840 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00004 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99493 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00039 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47347 * 89.99913 * 9 7 5 11 11 H 1.48503 * 109.46868 * 209.99974 * 9 7 5 12 12 H 1.48500 * 109.47417 * 329.99698 * 9 7 5 13 13 C 1.34780 * 120.00428 * 89.99527 * 3 2 1 14 14 O 1.21272 * 120.00530 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99402 * 0.02562 * 13 3 2 16 16 C 1.53002 * 109.46981 * 179.97438 * 15 13 3 17 17 C 1.50703 * 109.47361 * 180.02562 * 16 15 13 18 18 O 1.21250 * 119.99733 * 0.02562 * 17 16 15 19 19 C 1.47164 * 119.99851 * 180.02562 * 17 16 15 20 20 C 1.39855 * 120.16680 * 180.02562 * 19 17 16 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47423 * 300.00222 * 1 2 3 27 27 H 1.08999 * 109.46685 * 60.00586 * 1 2 3 28 28 H 1.08992 * 109.47423 * 239.99777 * 2 1 3 29 29 H 1.09004 * 109.47121 * 119.99580 * 2 1 3 30 30 H 1.09002 * 109.46912 * 30.00069 * 4 3 2 31 31 H 1.08998 * 109.47090 * 149.99566 * 4 3 2 32 32 H 0.97001 * 119.99222 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47258 * 60.00050 * 15 13 3 34 34 H 1.08995 * 109.47316 * 300.00069 * 15 13 3 35 35 H 1.09001 * 109.46706 * 60.00174 * 16 15 13 36 36 H 1.08995 * 109.47529 * 300.00401 * 16 15 13 37 37 H 1.07999 * 120.09085 * 359.69867 * 20 19 17 38 38 H 1.08000 * 119.91186 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.91489 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 5.3914 2.1834 -3.2572 9 14 3.0129 3.4352 -3.9291 10 1 3.1164 4.8555 -3.5081 11 1 3.4059 3.3119 -5.3559 12 1 1.6132 2.9692 -3.7593 13 6 2.2429 2.0167 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0739 1.5325 4.9404 18 8 1.6706 0.3891 4.9404 19 6 2.3192 2.2264 6.2148 20 6 2.0888 1.5699 7.4281 21 6 2.3216 2.2266 8.6180 22 6 2.7825 3.5316 8.6138 23 6 3.0125 4.1882 7.4172 24 6 2.7846 3.5452 6.2189 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 5.7172 2.5733 -4.0835 33 1 2.6228 0.4188 2.5299 34 1 0.9444 1.0115 2.5302 35 1 1.6937 3.1307 3.5778 36 1 3.3719 2.5375 3.5772 37 1 1.7253 0.5530 7.4330 38 1 2.1445 1.7209 9.5557 39 1 2.9633 4.0405 9.5490 40 1 3.3718 5.2066 7.4221 41 1 2.9642 4.0589 5.2861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:23 Heat of formation + Delta-G solvation = -53.849907 kcal Electronic energy + Delta-G solvation = -22141.018200 eV Core-core repulsion = 18792.838610 eV Total energy + Delta-G solvation = -3348.179589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28208 -39.15124 -38.24988 -35.42172 -33.14295 -32.55753 -31.44296 -31.18594 -30.26941 -28.03230 -25.91371 -23.59229 -22.93711 -22.67047 -21.69966 -19.70955 -18.36474 -17.50835 -16.91625 -16.56062 -15.87466 -15.78094 -15.38567 -15.35888 -14.53183 -14.48434 -14.01391 -13.92484 -13.75699 -13.43231 -13.22976 -12.86181 -12.61647 -12.37906 -12.09026 -11.97719 -11.89032 -11.73587 -11.40290 -11.28671 -11.08961 -10.91983 -10.62244 -10.47192 -10.14580 -9.79063 -9.53107 -9.28298 -9.24332 -9.00207 -8.58014 -7.70462 -6.07852 -4.06356 0.44208 1.09063 2.26562 3.29567 3.35501 3.36058 3.37259 3.56167 3.64899 4.06323 4.40334 4.53383 4.65038 4.76858 4.83730 5.04914 5.11395 5.16534 5.19401 5.26976 5.31933 5.39444 5.57440 5.59497 5.70173 5.71344 5.79907 5.96217 6.02096 6.07836 6.10027 6.14405 6.15383 6.19095 6.45300 6.59458 6.73376 6.96034 7.37072 7.40874 7.62578 8.27638 8.48346 8.93714 8.99819 9.52658 11.05644 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.003267 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.308067 B = 8567.836791 C = 9292.874496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.216 3.784 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.545 6.545 15 C -0.131 4.131 16 C -0.150 4.150 17 C 0.398 3.602 18 O -0.455 6.455 19 C -0.168 4.168 20 C -0.064 4.064 21 C -0.136 4.136 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.070 4.070 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -0.601 20.904 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.095 3.905 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.423 6.423 15 C -0.171 4.171 16 C -0.187 4.187 17 C 0.276 3.724 18 O -0.330 6.330 19 C -0.169 4.169 20 C -0.082 4.082 21 C -0.154 4.154 22 C -0.110 4.110 23 C -0.152 4.152 24 C -0.088 4.088 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.898 -0.564 20.714 22.551 hybrid contribution -0.353 0.559 -0.644 0.923 sum -9.250 -0.004 20.069 22.099 Atomic orbital electron populations 1.22221 0.96774 1.01632 1.02129 1.21462 0.93422 0.83776 1.03232 1.47936 1.63914 1.13442 1.07047 1.19644 0.97274 0.93371 0.80223 1.21341 0.95355 1.32825 1.07088 0.90779 1.24863 0.95002 0.95841 0.97364 1.69906 1.15138 1.45090 1.23555 0.86842 0.81478 0.81570 0.79742 1.19927 1.21099 1.19083 1.20312 0.78114 0.86870 0.85210 1.90650 1.46056 1.18250 1.87392 1.21501 1.04028 0.99454 0.92104 1.21779 1.05545 1.00104 0.91313 1.22623 0.72738 0.86876 0.90188 1.90502 1.34146 1.18368 1.89991 1.20596 1.05383 0.95936 0.94949 1.21454 0.95376 0.99988 0.91384 1.21155 1.00959 0.95237 0.98088 1.21439 0.96488 0.94704 0.98365 1.21200 1.01144 1.00559 0.92271 1.21630 0.94665 0.93299 0.99202 0.91955 0.92928 0.92331 0.89786 0.91134 0.95307 0.94613 0.92590 0.88751 0.88974 0.87538 0.87285 0.84948 0.85513 0.85675 0.85273 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.66 16 3 N -0.59 -12.23 2.46 -175.06 -0.43 -12.66 16 4 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 5 C -0.53 -15.23 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 9 Si 0.88 21.65 27.47 -169.99 -4.67 16.99 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 10.19 7.67 -10.98 -0.08 10.10 16 14 O -0.55 -12.91 15.56 5.56 0.09 -12.82 16 15 C -0.13 -1.96 3.54 -27.88 -0.10 -2.06 16 16 C -0.15 -1.97 3.60 -27.88 -0.10 -2.07 16 17 C 0.40 5.01 7.12 -30.69 -0.22 4.80 16 18 O -0.45 -6.70 15.98 5.58 0.09 -6.61 16 19 C -0.17 -1.85 5.87 -105.07 -0.62 -2.47 16 20 C -0.06 -0.64 9.60 -39.10 -0.38 -1.02 16 21 C -0.14 -1.10 10.03 -39.65 -0.40 -1.50 16 22 C -0.09 -0.69 10.04 -39.46 -0.40 -1.08 16 23 C -0.13 -1.09 10.03 -39.65 -0.40 -1.48 16 24 C -0.07 -0.67 9.47 -39.11 -0.37 -1.04 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.07 0.99 6.44 -51.93 -0.33 0.66 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.09 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.09 1.25 7.15 -51.93 -0.37 0.88 16 35 H 0.11 1.32 8.04 -51.93 -0.42 0.90 16 36 H 0.11 1.45 8.05 -51.93 -0.42 1.03 16 37 H 0.13 1.29 7.65 -52.49 -0.40 0.89 16 38 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 1.19 7.05 -52.49 -0.37 0.82 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -34.88 346.78 -8.00 -42.88 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.92 Total: 0.36 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.16 Total: -6.32 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.34 Total: -39.71 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.18 Total: -19.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.88 -8.00 -42.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.966 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds