Wall clock time and date at job start Tue Mar 31 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47138 * 2 1 4 4 C 1.46502 * 120.00159 * 269.99872 * 3 2 1 5 5 C 1.50696 * 109.47254 * 270.00013 * 4 3 2 6 6 H 1.07999 * 119.99840 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00004 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99493 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00039 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47347 * 89.99913 * 9 7 5 11 11 H 1.48503 * 109.46868 * 209.99974 * 9 7 5 12 12 H 1.48500 * 109.47417 * 329.99698 * 9 7 5 13 13 C 1.34780 * 120.00428 * 89.99527 * 3 2 1 14 14 O 1.21272 * 120.00530 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99402 * 0.02562 * 13 3 2 16 16 C 1.53002 * 109.46981 * 179.97438 * 15 13 3 17 17 C 1.50703 * 109.47361 * 180.02562 * 16 15 13 18 18 O 1.21250 * 119.99733 * 0.02562 * 17 16 15 19 19 C 1.47164 * 119.99851 * 180.02562 * 17 16 15 20 20 C 1.39855 * 120.16680 * 180.02562 * 19 17 16 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 1.08997 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47423 * 300.00222 * 1 2 3 27 27 H 1.08999 * 109.46685 * 60.00586 * 1 2 3 28 28 H 1.08992 * 109.47423 * 239.99777 * 2 1 3 29 29 H 1.09004 * 109.47121 * 119.99580 * 2 1 3 30 30 H 1.09002 * 109.46912 * 30.00069 * 4 3 2 31 31 H 1.08998 * 109.47090 * 149.99566 * 4 3 2 32 32 H 0.97001 * 119.99222 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47258 * 60.00050 * 15 13 3 34 34 H 1.08995 * 109.47316 * 300.00069 * 15 13 3 35 35 H 1.09001 * 109.46706 * 60.00174 * 16 15 13 36 36 H 1.08995 * 109.47529 * 300.00401 * 16 15 13 37 37 H 1.07999 * 120.09085 * 359.69867 * 20 19 17 38 38 H 1.08000 * 119.91186 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.91489 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 5.3914 2.1834 -3.2572 9 14 3.0129 3.4352 -3.9291 10 1 3.1164 4.8555 -3.5081 11 1 3.4059 3.3119 -5.3559 12 1 1.6132 2.9692 -3.7593 13 6 2.2429 2.0167 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0739 1.5325 4.9404 18 8 1.6706 0.3891 4.9404 19 6 2.3192 2.2264 6.2148 20 6 2.0888 1.5699 7.4281 21 6 2.3216 2.2266 8.6180 22 6 2.7825 3.5316 8.6138 23 6 3.0125 4.1882 7.4172 24 6 2.7846 3.5452 6.2189 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 5.7172 2.5733 -4.0835 33 1 2.6228 0.4188 2.5299 34 1 0.9444 1.0115 2.5302 35 1 1.6937 3.1307 3.5778 36 1 3.3719 2.5375 3.5772 37 1 1.7253 0.5530 7.4330 38 1 2.1445 1.7209 9.5557 39 1 2.9633 4.0405 9.5490 40 1 3.3718 5.2066 7.4221 41 1 2.9642 4.0589 5.2861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:23 Heat of formation + Delta-G solvation = -74.915040 kcal Electronic energy + Delta-G solvation = -22141.931652 eV Core-core repulsion = 18792.838610 eV Total energy + Delta-G solvation = -3349.093042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30758 -40.56090 -39.11386 -37.04627 -34.93780 -34.07112 -32.34375 -31.89449 -31.71911 -29.75141 -27.20521 -24.74230 -24.33685 -23.63543 -22.97402 -20.64400 -19.84643 -19.11509 -18.51283 -17.80090 -17.17739 -16.97165 -16.55265 -16.32814 -16.17665 -15.61766 -15.24392 -14.91556 -14.74622 -14.64344 -14.46704 -14.36791 -14.01109 -13.72003 -13.46255 -13.31003 -13.21525 -12.89781 -12.59954 -12.54160 -12.41624 -12.24001 -12.02812 -11.98153 -11.83110 -11.74478 -10.83751 -10.79183 -10.65817 -9.94685 -9.94217 -9.42602 -8.34377 -6.39540 -0.33576 0.43178 1.32725 1.36430 1.40330 1.45254 1.77413 2.24689 2.30929 2.85992 2.96286 3.00446 3.60697 3.88396 3.91493 4.04611 4.05133 4.13029 4.19216 4.32410 4.39694 4.48603 4.52985 4.60831 4.64484 4.75862 4.84659 4.90693 4.91597 4.96407 4.98864 5.01565 5.08529 5.36691 5.37903 5.46370 5.46889 5.51080 5.64824 5.96312 6.23569 6.43793 6.61743 6.69447 7.20640 7.39643 8.82761 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.003267 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.308067 B = 8567.836791 C = 9292.874496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.225 3.775 5 C -0.536 4.536 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.239 1.239 13 C 0.500 3.500 14 O -0.589 6.589 15 C -0.118 4.118 16 C -0.147 4.147 17 C 0.407 3.593 18 O -0.481 6.481 19 C -0.191 4.191 20 C -0.077 4.077 21 C -0.137 4.137 22 C -0.085 4.085 23 C -0.138 4.138 24 C -0.079 4.079 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.269 0.731 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 -0.160 22.438 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.102 3.898 5 C -0.575 4.575 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.289 3.711 14 O -0.470 6.470 15 C -0.157 4.157 16 C -0.184 4.184 17 C 0.287 3.713 18 O -0.359 6.359 19 C -0.191 4.191 20 C -0.095 4.095 21 C -0.155 4.155 22 C -0.103 4.103 23 C -0.156 4.156 24 C -0.097 4.097 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.169 0.831 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.925 -0.163 22.271 24.807 hybrid contribution 0.375 0.401 -1.006 1.146 sum -10.550 0.238 21.265 23.739 Atomic orbital electron populations 1.22144 0.93956 1.03597 1.02088 1.21753 0.95670 0.81281 1.03751 1.48073 1.64004 1.15106 1.06007 1.19307 0.94752 0.93131 0.82570 1.21568 0.97072 1.32112 1.06755 0.95436 1.25866 0.96740 0.97207 0.98931 1.70058 1.17449 1.46629 1.24487 0.85695 0.80369 0.79055 0.77721 1.19946 1.20028 1.16229 1.21177 0.76855 0.86560 0.86494 1.90617 1.47926 1.20338 1.88149 1.21445 1.05390 0.99244 0.89643 1.21749 1.05405 1.00107 0.91171 1.22611 0.71767 0.86367 0.90533 1.90486 1.35822 1.19301 1.90273 1.20516 1.07506 0.96733 0.94392 1.21580 0.95928 1.00133 0.91903 1.21479 1.00106 0.95628 0.98286 1.21855 0.94657 0.94403 0.99398 1.21532 1.00560 1.01580 0.91928 1.21765 0.94821 0.92931 1.00215 0.88957 0.92143 0.93175 0.90909 0.89093 0.93501 0.96092 0.92251 0.88218 0.86843 0.86812 0.87865 0.85322 0.83036 0.82595 0.83114 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 3.04 5.93 86.38 0.51 3.55 16 3 N -0.60 -24.86 2.46 -826.16 -2.03 -26.89 16 4 C 0.22 11.09 4.23 85.63 0.36 11.45 16 5 C -0.54 -31.99 9.94 25.60 0.25 -31.74 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 9 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 13 C 0.50 20.22 7.67 87.66 0.67 20.90 16 14 O -0.59 -28.60 15.56 -3.00 -0.05 -28.64 16 15 C -0.12 -3.46 3.54 29.85 0.11 -3.36 16 16 C -0.15 -3.85 3.60 29.85 0.11 -3.74 16 17 C 0.41 10.19 7.12 28.03 0.20 10.39 16 18 O -0.48 -14.02 15.98 -2.94 -0.05 -14.07 16 19 C -0.19 -4.11 5.87 -20.15 -0.12 -4.23 16 20 C -0.08 -1.48 9.60 22.58 0.22 -1.26 16 21 C -0.14 -1.89 10.03 22.23 0.22 -1.67 16 22 C -0.09 -1.02 10.04 22.35 0.22 -0.79 16 23 C -0.14 -1.94 10.03 22.23 0.22 -1.71 16 24 C -0.08 -1.45 9.47 22.58 0.21 -1.24 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 29 H 0.09 2.43 6.44 -2.39 -0.02 2.42 16 30 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 31 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 32 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 33 H 0.10 2.85 7.36 -2.39 -0.02 2.84 16 34 H 0.11 2.87 7.15 -2.39 -0.02 2.86 16 35 H 0.11 2.80 8.04 -2.39 -0.02 2.78 16 36 H 0.10 2.83 8.05 -2.39 -0.02 2.81 16 37 H 0.13 2.47 7.65 -2.91 -0.02 2.45 16 38 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.14 2.39 7.05 -2.91 -0.02 2.37 16 Total: -1.00 -78.51 346.78 5.42 -73.10 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.96 Total: 15.40 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.40 Total: -5.45 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -1.73 Total: -86.94 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.09 Total: -42.71 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -78.51 5.42 -73.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.820 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds