Wall clock time and date at job start Tue Mar 31 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46509 * 109.46917 * 2 1 4 4 C 1.46500 * 120.00112 * 85.07812 * 3 2 1 5 5 C 1.50695 * 109.46992 * 89.99916 * 4 3 2 6 6 H 1.08001 * 119.99934 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00446 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47252 * 59.99941 * 9 7 5 11 11 H 1.48498 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46766 * 300.00206 * 9 7 5 13 13 C 1.34778 * 119.99853 * 265.08108 * 3 2 1 14 14 O 1.21274 * 119.99797 * 185.14610 * 13 3 2 15 15 C 1.50695 * 119.99987 * 5.14566 * 13 3 2 16 16 H 1.09003 * 109.44187 * 24.85087 * 15 13 3 17 17 C 1.53073 * 109.43885 * 264.93038 * 15 13 3 18 18 C 1.53404 * 108.29519 * 191.74710 * 17 15 13 19 19 O 1.42831 * 108.37339 * 64.74604 * 18 17 15 20 20 C 1.35843 * 117.85706 * 310.85644 * 19 18 17 21 21 C 1.39151 * 118.49281 * 197.01340 * 20 19 18 22 22 C 1.37972 * 120.21337 * 180.17899 * 21 20 19 23 23 C 1.38288 * 119.96149 * 0.02562 * 22 21 20 24 24 C 1.38108 * 119.97798 * 359.92658 * 23 22 21 25 25 C 1.38308 * 121.79952 * 17.10955 * 20 19 18 26 26 H 1.09003 * 109.47275 * 64.99196 * 1 2 3 27 27 H 1.09000 * 109.47052 * 184.99254 * 1 2 3 28 28 H 1.08999 * 109.47423 * 304.98771 * 1 2 3 29 29 H 1.09001 * 109.47064 * 240.00204 * 2 1 3 30 30 H 1.08994 * 109.47438 * 119.99532 * 2 1 3 31 31 H 1.08993 * 109.47504 * 210.00185 * 4 3 2 32 32 H 1.09006 * 109.47041 * 330.00181 * 4 3 2 33 33 H 0.96996 * 120.00243 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.69936 * 311.44975 * 17 15 13 35 35 H 1.09008 * 109.69807 * 72.00678 * 17 15 13 36 36 H 1.09004 * 109.68817 * 184.46992 * 18 17 15 37 37 H 1.09003 * 109.68454 * 305.03149 * 18 17 15 38 38 H 1.07994 * 119.89474 * 0.16106 * 21 20 19 39 39 H 1.07996 * 120.01891 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.01118 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.84059 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1598 2.1082 1.2640 5 6 3.5429 1.8857 1.8193 6 1 4.2463 1.2651 1.2840 7 6 3.9108 2.4750 3.0102 8 7 3.0544 3.2310 3.6619 9 14 5.6255 2.1997 3.6983 10 1 6.6340 2.6942 2.7268 11 1 5.7690 2.9364 4.9796 12 1 5.8366 0.7490 3.9356 13 6 2.3372 1.9833 -1.1629 14 8 2.8289 3.0919 -1.1570 15 6 2.0830 1.2788 -2.4706 16 1 1.2815 0.5515 -2.3410 17 6 3.3574 0.5582 -2.9173 18 6 3.1698 0.1041 -4.3705 19 8 3.0485 1.2656 -5.1930 20 6 2.1732 2.2294 -4.8052 21 6 1.7722 3.1775 -5.7415 22 6 0.8874 4.1743 -5.3849 23 6 0.3971 4.2330 -4.0932 24 6 0.7923 3.2931 -3.1617 25 6 1.6796 2.2891 -3.5146 26 1 -0.3634 0.4344 -0.9313 27 1 -0.3633 -1.0238 0.0894 28 1 -0.3634 0.5892 0.8419 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 2.0051 3.1730 1.0902 32 1 1.4193 1.7452 1.9768 33 1 3.3133 3.6459 4.4996 34 1 4.2064 1.2386 -2.8516 35 1 3.5316 -0.3091 -2.2803 36 1 4.0332 -0.4812 -4.6868 37 1 2.2661 -0.4998 -4.4527 38 1 2.1549 3.1331 -6.7503 39 1 0.5778 4.9082 -6.1142 40 1 -0.2952 5.0131 -3.8132 41 1 0.4077 3.3408 -2.1536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103210115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:05 Heat of formation + Delta-G solvation = -51.359925 kcal Electronic energy + Delta-G solvation = -23634.619198 eV Core-core repulsion = 20286.547583 eV Total energy + Delta-G solvation = -3348.071616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91273 -38.84473 -37.39207 -35.34738 -34.10685 -32.68927 -30.57974 -30.11636 -30.10407 -27.66057 -25.84332 -23.76744 -23.13154 -22.83210 -22.10774 -20.05165 -18.48956 -17.63143 -16.89017 -16.57660 -16.34712 -15.71974 -15.50400 -14.90152 -14.41963 -14.22306 -13.88005 -13.75174 -13.45873 -13.23312 -13.11853 -12.98708 -12.68694 -12.10934 -12.01525 -11.91215 -11.56688 -11.40882 -11.20129 -11.02421 -10.90512 -10.80681 -10.75581 -10.57946 -10.46344 -10.14153 -9.66144 -8.92308 -8.61354 -8.43880 -8.05019 -7.68933 -6.04997 -4.09545 1.43247 1.56772 3.28283 3.31015 3.32524 3.35786 3.39882 3.74288 4.01013 4.43991 4.58630 4.72374 4.79212 4.91404 5.09668 5.16426 5.23095 5.27772 5.30281 5.36196 5.45719 5.53096 5.56567 5.60536 5.63326 5.74021 5.87955 6.02675 6.07193 6.13938 6.20385 6.38226 6.46549 6.58642 6.68629 6.87150 7.04786 7.40899 7.49788 7.52449 7.91062 8.22448 8.38814 8.88792 9.06956 9.55466 11.03111 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.004690 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.557740 B = 5968.187739 C = 6053.590565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.514 3.486 14 O -0.527 6.527 15 C -0.070 4.070 16 H 0.099 0.901 17 C -0.150 4.150 18 C 0.066 3.934 19 O -0.318 6.318 20 C 0.134 3.866 21 C -0.156 4.156 22 C -0.089 4.089 23 C -0.153 4.153 24 C -0.060 4.060 25 C -0.134 4.134 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -7.197 -15.880 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.299 3.701 14 O -0.403 6.403 15 C -0.092 4.092 16 H 0.117 0.883 17 C -0.187 4.187 18 C -0.009 4.009 19 O -0.232 6.232 20 C 0.089 3.911 21 C -0.174 4.174 22 C -0.107 4.107 23 C -0.172 4.172 24 C -0.078 4.078 25 C -0.135 4.135 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.757 -6.491 -15.825 18.047 hybrid contribution 0.881 -0.254 0.880 1.271 sum -4.876 -6.746 -14.945 17.107 Atomic orbital electron populations 1.22237 0.96728 1.01653 1.02293 1.21455 0.93684 0.84333 1.02517 1.48285 1.63302 1.13261 1.08010 1.19253 0.96832 0.92814 0.78220 1.21373 0.98544 1.30592 1.05873 0.92589 1.24923 0.97456 0.94916 0.96741 1.69917 1.35023 1.32065 1.16432 0.86574 0.84588 0.78162 0.78191 1.20200 1.21160 1.20269 1.19926 0.79297 0.86456 0.84409 1.90702 1.42595 1.20112 1.86859 1.20314 0.99008 0.96780 0.93077 0.88309 1.22188 0.97981 1.01837 0.96739 1.22958 1.02667 0.85625 0.89661 1.85957 1.58145 1.28465 1.50641 1.18602 0.90460 0.90111 0.91880 1.20485 1.01368 0.96664 0.98894 1.20870 0.96285 0.97195 0.96390 1.20987 1.02559 0.99999 0.93615 1.20938 0.94882 0.92770 0.99178 1.19349 1.01635 0.99794 0.92705 0.93099 0.92123 0.91793 0.91707 0.89962 0.94089 0.94956 0.92673 0.89456 0.89194 0.87270 0.91720 0.85498 0.85666 0.85970 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.12 37.16 0.38 -1.86 16 2 C 0.10 1.62 5.70 -4.04 -0.02 1.59 16 3 N -0.60 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.40 5.14 -5.20 -0.03 6.38 16 5 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.51 10.64 5.62 -10.99 -0.06 10.58 16 14 O -0.53 -13.47 15.45 5.56 0.09 -13.38 16 15 C -0.07 -1.10 1.88 -92.85 -0.17 -1.28 16 16 H 0.10 1.31 5.70 -51.93 -0.30 1.02 16 17 C -0.15 -2.04 5.40 -26.48 -0.14 -2.18 16 18 C 0.07 0.73 7.03 37.37 0.26 0.99 16 19 O -0.32 -4.48 10.27 -19.25 -0.20 -4.67 16 20 C 0.13 2.04 6.47 -39.22 -0.25 1.79 16 21 C -0.16 -2.09 9.94 -39.34 -0.39 -2.48 16 22 C -0.09 -1.11 10.04 -39.66 -0.40 -1.51 16 23 C -0.15 -2.13 10.05 -39.61 -0.40 -2.52 16 24 C -0.06 -0.97 8.57 -39.51 -0.34 -1.31 16 25 C -0.13 -2.17 5.11 -104.44 -0.53 -2.70 16 26 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.82 5.60 -51.93 -0.29 0.53 16 30 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 31 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 35 H 0.09 1.05 7.40 -51.92 -0.38 0.66 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.12 2.08 7.34 -52.49 -0.39 1.70 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -33.86 336.35 -8.18 -42.04 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.90 Total: 0.66 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.52 Total: -8.00 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.31 Total: -38.61 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.11 Total: -18.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.86 -8.18 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.320 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds