Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46509 * 109.46917 * 2 1 4 4 C 1.46500 * 120.00112 * 85.07812 * 3 2 1 5 5 C 1.50695 * 109.46992 * 89.99916 * 4 3 2 6 6 H 1.08001 * 119.99934 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00446 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47252 * 59.99941 * 9 7 5 11 11 H 1.48498 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46766 * 300.00206 * 9 7 5 13 13 C 1.34778 * 119.99853 * 265.08108 * 3 2 1 14 14 O 1.21274 * 119.99797 * 185.14610 * 13 3 2 15 15 C 1.50695 * 119.99987 * 5.14566 * 13 3 2 16 16 H 1.09003 * 109.44187 * 24.85087 * 15 13 3 17 17 C 1.53073 * 109.43885 * 264.93038 * 15 13 3 18 18 C 1.53404 * 108.29519 * 191.74710 * 17 15 13 19 19 O 1.42831 * 108.37339 * 64.74604 * 18 17 15 20 20 C 1.35843 * 117.85706 * 310.85644 * 19 18 17 21 21 C 1.39151 * 118.49281 * 197.01340 * 20 19 18 22 22 C 1.37972 * 120.21337 * 180.17899 * 21 20 19 23 23 C 1.38288 * 119.96149 * 0.02562 * 22 21 20 24 24 C 1.38108 * 119.97798 * 359.92658 * 23 22 21 25 25 C 1.38308 * 121.79952 * 17.10955 * 20 19 18 26 26 H 1.09003 * 109.47275 * 64.99196 * 1 2 3 27 27 H 1.09000 * 109.47052 * 184.99254 * 1 2 3 28 28 H 1.08999 * 109.47423 * 304.98771 * 1 2 3 29 29 H 1.09001 * 109.47064 * 240.00204 * 2 1 3 30 30 H 1.08994 * 109.47438 * 119.99532 * 2 1 3 31 31 H 1.08993 * 109.47504 * 210.00185 * 4 3 2 32 32 H 1.09006 * 109.47041 * 330.00181 * 4 3 2 33 33 H 0.96996 * 120.00243 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.69936 * 311.44975 * 17 15 13 35 35 H 1.09008 * 109.69807 * 72.00678 * 17 15 13 36 36 H 1.09004 * 109.68817 * 184.46992 * 18 17 15 37 37 H 1.09003 * 109.68454 * 305.03149 * 18 17 15 38 38 H 1.07994 * 119.89474 * 0.16106 * 21 20 19 39 39 H 1.07996 * 120.01891 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.01118 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.84059 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1598 2.1082 1.2640 5 6 3.5429 1.8857 1.8193 6 1 4.2463 1.2651 1.2840 7 6 3.9108 2.4750 3.0102 8 7 3.0544 3.2310 3.6619 9 14 5.6255 2.1997 3.6983 10 1 6.6340 2.6942 2.7268 11 1 5.7690 2.9364 4.9796 12 1 5.8366 0.7490 3.9356 13 6 2.3372 1.9833 -1.1629 14 8 2.8289 3.0919 -1.1570 15 6 2.0830 1.2788 -2.4706 16 1 1.2815 0.5515 -2.3410 17 6 3.3574 0.5582 -2.9173 18 6 3.1698 0.1041 -4.3705 19 8 3.0485 1.2656 -5.1930 20 6 2.1732 2.2294 -4.8052 21 6 1.7722 3.1775 -5.7415 22 6 0.8874 4.1743 -5.3849 23 6 0.3971 4.2330 -4.0932 24 6 0.7923 3.2931 -3.1617 25 6 1.6796 2.2891 -3.5146 26 1 -0.3634 0.4344 -0.9313 27 1 -0.3633 -1.0238 0.0894 28 1 -0.3634 0.5892 0.8419 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 2.0051 3.1730 1.0902 32 1 1.4193 1.7452 1.9768 33 1 3.3133 3.6459 4.4996 34 1 4.2064 1.2386 -2.8516 35 1 3.5316 -0.3091 -2.2803 36 1 4.0332 -0.4812 -4.6868 37 1 2.2661 -0.4998 -4.4527 38 1 2.1549 3.1331 -6.7503 39 1 0.5778 4.9082 -6.1142 40 1 -0.2952 5.0131 -3.8132 41 1 0.4077 3.3408 -2.1536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103210115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = -72.514697 kcal Electronic energy + Delta-G solvation = -23635.536538 eV Core-core repulsion = 20286.547583 eV Total energy + Delta-G solvation = -3348.988955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10179 -40.34353 -38.42718 -37.01768 -35.47610 -34.67926 -31.66142 -31.56986 -31.19973 -29.43745 -27.27839 -24.96226 -24.82184 -24.10254 -23.38834 -21.20022 -19.97841 -18.74245 -18.65187 -18.22571 -17.68584 -17.09665 -16.83877 -16.35143 -15.89969 -15.70534 -15.11739 -14.99125 -14.75340 -14.54042 -14.34419 -14.30228 -14.11650 -13.71338 -13.37434 -13.20340 -13.14088 -12.94207 -12.65028 -12.56133 -12.45751 -12.18320 -12.10882 -11.93094 -11.77163 -11.75406 -11.58582 -10.66337 -10.55290 -9.76075 -9.48055 -9.12786 -8.24196 -6.38840 0.33346 0.46647 1.34045 1.38644 1.45731 1.73045 2.21145 2.35847 2.42786 2.81011 3.05379 3.39929 3.61911 3.68500 3.77584 4.02423 4.09929 4.15508 4.20523 4.36692 4.39073 4.46320 4.51975 4.55069 4.59769 4.67035 4.82883 4.94929 4.96003 4.97014 5.03587 5.05894 5.18422 5.31757 5.36667 5.49211 5.55147 5.59286 5.82699 5.85131 6.04357 6.46141 6.67347 6.75752 7.26025 7.44601 8.82801 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.004690 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.557740 B = 5968.187739 C = 6053.590565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.601 5.601 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.258 1.258 13 C 0.509 3.491 14 O -0.588 6.588 15 C -0.058 4.058 16 H 0.127 0.873 17 C -0.149 4.149 18 C 0.067 3.933 19 O -0.326 6.326 20 C 0.124 3.876 21 C -0.159 4.159 22 C -0.081 4.081 23 C -0.161 4.161 24 C -0.086 4.086 25 C -0.157 4.157 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.075 0.925 31 H -0.008 1.008 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.139 0.861 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -9.423 -18.015 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.206 1.206 11 H -0.203 1.203 12 H -0.182 1.182 13 C 0.297 3.703 14 O -0.469 6.469 15 C -0.079 4.079 16 H 0.145 0.855 17 C -0.187 4.187 18 C -0.007 4.007 19 O -0.241 6.241 20 C 0.079 3.921 21 C -0.177 4.177 22 C -0.098 4.098 23 C -0.179 4.179 24 C -0.104 4.104 25 C -0.158 4.158 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.010 0.990 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.131 0.869 36 H 0.159 0.841 37 H 0.110 0.890 38 H 0.169 0.831 39 H 0.180 0.820 40 H 0.156 0.844 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.479 -8.780 -17.970 20.737 hybrid contribution 0.743 0.476 1.517 1.755 sum -4.736 -8.304 -16.453 19.029 Atomic orbital electron populations 1.22173 0.94666 1.03600 1.01680 1.21820 0.95393 0.81356 1.04035 1.48300 1.63316 1.15119 1.06431 1.18678 0.95842 0.90740 0.80437 1.21652 0.99384 1.30714 1.06235 0.92950 1.25848 1.01712 0.94444 0.97082 1.70042 1.37122 1.32816 1.16864 0.85494 0.79000 0.79118 0.77359 1.20608 1.20279 1.18209 1.20863 0.77635 0.85862 0.85907 1.90655 1.45359 1.22956 1.87894 1.20283 1.01050 0.96909 0.89678 0.85527 1.22233 0.95332 1.01598 0.99506 1.23260 1.05440 0.84950 0.87082 1.85945 1.57807 1.29108 1.51221 1.18813 0.90554 0.91005 0.91738 1.20904 1.01010 0.96054 0.99746 1.21286 0.95037 0.97296 0.96228 1.21267 1.02844 0.99750 0.94075 1.20938 0.96294 0.94488 0.98728 1.19460 1.02413 1.00394 0.93546 0.92272 0.88398 0.94292 0.87925 0.90650 0.98999 0.95794 0.92414 0.92853 0.86892 0.84110 0.89010 0.83058 0.81974 0.84359 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.12 71.98 0.73 -3.33 16 2 C 0.10 2.88 5.70 86.38 0.49 3.38 16 3 N -0.60 -25.75 2.46 -826.17 -2.03 -27.78 16 4 C 0.26 14.50 5.14 85.63 0.44 14.95 16 5 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 9 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.51 21.96 5.62 87.66 0.49 22.45 16 14 O -0.59 -32.20 15.45 -3.01 -0.05 -32.24 16 15 C -0.06 -1.80 1.88 -12.24 -0.02 -1.82 16 16 H 0.13 3.09 5.70 -2.39 -0.01 3.08 16 17 C -0.15 -3.81 5.40 30.75 0.17 -3.64 16 18 C 0.07 1.25 7.03 72.12 0.51 1.75 16 19 O -0.33 -8.41 10.27 -91.79 -0.94 -9.35 16 20 C 0.12 3.59 6.47 22.51 0.15 3.74 16 21 C -0.16 -3.90 9.94 22.43 0.22 -3.68 16 22 C -0.08 -1.84 10.04 22.22 0.22 -1.61 16 23 C -0.16 -4.41 10.05 22.25 0.22 -4.19 16 24 C -0.09 -2.90 8.57 22.32 0.19 -2.71 16 25 C -0.16 -5.08 5.11 -19.75 -0.10 -5.18 16 26 H 0.06 1.37 7.44 -2.39 -0.02 1.36 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 2.30 5.60 -2.39 -0.01 2.28 16 30 H 0.08 2.38 8.11 -2.39 -0.02 2.36 16 31 H -0.01 -0.52 7.50 -2.39 -0.02 -0.54 16 32 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.11 2.31 7.40 -2.38 -0.02 2.29 16 36 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.10 3.61 7.34 -2.91 -0.02 3.59 16 Total: -1.00 -79.39 336.35 4.72 -74.66 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.02 Total: 14.26 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.41 Total: -10.39 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -1.74 Total: -84.45 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.99 Total: -41.59 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.39 4.72 -74.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.148 kcal (2) G-P(sol) polarization free energy of solvation -79.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds