Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47288 * 2 1 4 4 C 1.46499 * 120.00162 * 270.53052 * 3 2 1 5 5 C 1.50693 * 109.47108 * 269.99893 * 4 3 2 6 6 H 1.08004 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00258 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99751 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00425 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46864 * 89.99948 * 9 7 5 11 11 H 1.48497 * 109.47066 * 209.99953 * 9 7 5 12 12 H 1.48496 * 109.46825 * 329.99728 * 9 7 5 13 13 C 1.34783 * 119.99699 * 90.52532 * 3 2 1 14 14 O 1.21282 * 119.99621 * 184.44594 * 13 3 2 15 15 C 1.50688 * 120.00330 * 4.45283 * 13 3 2 16 16 H 1.09009 * 109.72686 * 326.85951 * 15 13 3 17 17 C 1.53401 * 109.70188 * 87.43254 * 15 13 3 18 18 O 1.42821 * 108.38369 * 184.39192 * 17 15 13 19 19 C 1.35857 * 117.77619 * 310.48608 * 18 17 15 20 20 C 1.39140 * 118.49618 * 196.82969 * 19 18 17 21 21 C 1.37964 * 120.21465 * 180.72698 * 20 19 18 22 22 C 1.38298 * 119.95752 * 0.25675 * 21 20 19 23 23 C 1.38107 * 119.98239 * 359.90091 * 22 21 20 24 24 C 1.38369 * 121.79171 * 17.94516 * 19 18 17 25 25 C 1.50759 * 121.40945 * 358.75985 * 24 19 18 26 26 H 1.08992 * 109.47061 * 300.00045 * 1 2 3 27 27 H 1.08998 * 109.46906 * 60.00002 * 1 2 3 28 28 H 1.09005 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47539 * 240.00034 * 2 1 3 30 30 H 1.09007 * 109.46817 * 119.99755 * 2 1 3 31 31 H 1.09002 * 109.46787 * 29.99896 * 4 3 2 32 32 H 1.08995 * 109.47262 * 149.99219 * 4 3 2 33 33 H 0.97001 * 119.99752 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.68140 * 304.11589 * 17 15 13 35 35 H 1.08998 * 109.68345 * 64.63084 * 17 15 13 36 36 H 1.08005 * 119.89330 * 0.99997 * 20 19 18 37 37 H 1.07999 * 120.02535 * 180.24228 * 21 20 19 38 38 H 1.07995 * 120.00494 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.84045 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.43911 * 138.23284 * 25 24 19 41 41 H 1.08997 * 109.43560 * 258.14090 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2515 2.0758 -1.2686 5 6 3.6709 1.8403 -1.7168 6 1 4.3333 1.2343 -1.1164 7 6 4.1240 2.3985 -2.8932 8 7 3.3172 3.1361 -3.6246 9 14 5.8833 2.1061 -3.4491 10 1 5.9387 0.8876 -4.2960 11 1 6.3556 3.2756 -4.2329 12 1 6.7540 1.9228 -2.2603 13 6 2.2531 2.0130 1.1672 14 8 2.5798 3.1810 1.1696 15 6 2.1099 1.2681 2.4693 16 1 1.3153 0.5267 2.3836 17 6 3.4321 0.5711 2.8145 18 8 3.2358 -0.2077 3.9955 19 6 2.6479 0.3958 5.0614 20 6 2.7638 -0.2046 6.3113 21 6 2.1681 0.3698 7.4152 22 6 1.4488 1.5432 7.2797 23 6 1.3290 2.1400 6.0400 24 6 1.9257 1.5685 4.9283 25 6 1.7775 2.2527 3.5932 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5641 1.6940 -2.0235 32 1 2.0856 3.1445 -1.1336 33 1 3.6359 3.5285 -4.4525 34 1 3.7304 -0.0786 1.9917 35 1 4.2057 1.3183 2.9913 36 1 3.3255 -1.1208 6.4184 37 1 2.2633 -0.0967 8.3846 38 1 0.9818 1.9932 8.1433 39 1 0.7671 3.0565 5.9369 40 1 0.7519 2.6030 3.4769 41 1 2.4586 3.1022 3.5434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110512985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = -56.437630 kcal Electronic energy + Delta-G solvation = -23196.344452 eV Core-core repulsion = 19848.052650 eV Total energy + Delta-G solvation = -3348.291801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90675 -39.07911 -37.42805 -35.45327 -34.10493 -32.79449 -30.81515 -30.30366 -30.12644 -27.25295 -25.74668 -24.47613 -23.06108 -22.72481 -22.30963 -20.16055 -18.36538 -17.86281 -17.00966 -16.50420 -16.33900 -15.58514 -15.50474 -14.84548 -14.64420 -14.27212 -14.13232 -13.73235 -13.52338 -13.38085 -13.26198 -13.07349 -12.72885 -12.34655 -12.07317 -11.81111 -11.73435 -11.47473 -11.24730 -11.04278 -10.94094 -10.82200 -10.74267 -10.53921 -10.53472 -10.17610 -9.68912 -9.01805 -8.82707 -8.47495 -8.20887 -7.74057 -6.08538 -4.13913 1.23524 1.35005 3.12012 3.27374 3.32177 3.34649 3.38534 3.66743 3.83126 4.40395 4.60125 4.67727 4.75916 4.85446 4.94899 5.07390 5.16828 5.26107 5.28917 5.33323 5.39250 5.53874 5.57310 5.61137 5.64257 5.74609 5.89695 5.95858 6.03301 6.14926 6.19519 6.21208 6.39722 6.44423 6.46363 6.69448 7.00807 7.38801 7.40462 7.47817 7.87423 8.18123 8.33147 8.82827 8.99096 9.51525 10.99497 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.003966 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.179642 B = 7058.753166 C = 7310.338779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.515 3.485 14 O -0.537 6.537 15 C -0.149 4.149 16 H 0.102 0.898 17 C 0.076 3.924 18 O -0.312 6.312 19 C 0.130 3.870 20 C -0.150 4.150 21 C -0.094 4.094 22 C -0.155 4.155 23 C -0.085 4.085 24 C -0.150 4.150 25 C -0.064 4.064 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 -7.631 17.696 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.324 5.324 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.301 3.699 14 O -0.414 6.414 15 C -0.171 4.171 16 H 0.120 0.880 17 C 0.001 3.999 18 O -0.226 6.226 19 C 0.084 3.916 20 C -0.168 4.168 21 C -0.112 4.112 22 C -0.173 4.173 23 C -0.103 4.103 24 C -0.151 4.151 25 C -0.102 4.102 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.977 -7.089 17.452 19.484 hybrid contribution 0.825 -0.005 -0.586 1.012 sum -4.152 -7.094 16.866 18.763 Atomic orbital electron populations 1.22217 0.96642 1.01544 1.02353 1.21495 0.93723 0.84165 1.02815 1.48271 1.63183 1.13332 1.07660 1.19300 0.96382 0.93690 0.77998 1.21419 0.97019 1.31956 1.06384 0.92456 1.24936 0.97850 0.94847 0.96408 1.69937 1.35642 1.33178 1.14463 0.86499 0.84555 0.77725 0.78675 1.20596 1.21060 1.19873 1.19850 0.78367 0.87178 0.84544 1.90669 1.47448 1.16342 1.86925 1.22042 1.00183 0.99681 0.95171 0.88020 1.22887 0.95599 0.95860 0.85591 1.86024 1.75709 1.39623 1.21215 1.18771 0.93125 0.92277 0.87384 1.20581 1.04148 1.02189 0.89915 1.20889 0.96806 0.95630 0.97844 1.20995 1.01922 0.96995 0.97375 1.20917 0.98359 0.99301 0.91710 1.19934 1.01457 0.97012 0.96684 1.20380 1.03678 0.97697 0.88412 0.93102 0.91930 0.92050 0.89735 0.91544 0.94929 0.93757 0.92668 0.86676 0.90770 0.85351 0.85652 0.86038 0.85766 0.89851 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.11 37.16 0.38 -1.90 16 2 C 0.10 1.60 5.74 -4.04 -0.02 1.58 16 3 N -0.59 -12.12 2.46 -175.07 -0.43 -12.55 16 4 C 0.25 6.26 5.20 -5.20 -0.03 6.24 16 5 C -0.53 -14.65 9.39 -34.45 -0.32 -14.97 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.52 10.34 6.79 -10.99 -0.07 10.27 16 14 O -0.54 -13.04 15.43 5.56 0.09 -12.95 16 15 C -0.15 -2.28 1.89 -91.53 -0.17 -2.45 16 16 H 0.10 1.41 6.03 -51.92 -0.31 1.09 16 17 C 0.08 1.11 6.09 37.37 0.23 1.34 16 18 O -0.31 -4.45 10.27 -19.29 -0.20 -4.65 16 19 C 0.13 1.76 6.47 -39.20 -0.25 1.51 16 20 C -0.15 -1.73 9.94 -39.35 -0.39 -2.12 16 21 C -0.09 -0.92 10.04 -39.66 -0.40 -1.32 16 22 C -0.15 -1.54 10.05 -39.61 -0.40 -1.94 16 23 C -0.08 -0.96 9.67 -39.53 -0.38 -1.34 16 24 C -0.15 -1.99 5.75 -104.44 -0.60 -2.59 16 25 C -0.06 -0.93 4.96 -27.82 -0.14 -1.07 16 26 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 30 H 0.07 0.89 5.59 -51.92 -0.29 0.60 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.29 7.37 -51.93 -0.38 0.90 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.12 1.60 7.54 -51.93 -0.39 1.20 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.53 7.42 -51.93 -0.39 1.14 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -32.03 338.52 -8.33 -40.36 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.93 Total: 0.79 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.68 Total: -7.12 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.31 Total: -38.05 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.11 Total: -17.60 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.03 -8.33 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.078 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds