Wall clock time and date at job start Tue Mar 31 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47288 * 2 1 4 4 C 1.46499 * 120.00162 * 270.53052 * 3 2 1 5 5 C 1.50693 * 109.47108 * 269.99893 * 4 3 2 6 6 H 1.08004 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00258 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99751 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00425 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46864 * 89.99948 * 9 7 5 11 11 H 1.48497 * 109.47066 * 209.99953 * 9 7 5 12 12 H 1.48496 * 109.46825 * 329.99728 * 9 7 5 13 13 C 1.34783 * 119.99699 * 90.52532 * 3 2 1 14 14 O 1.21282 * 119.99621 * 184.44594 * 13 3 2 15 15 C 1.50688 * 120.00330 * 4.45283 * 13 3 2 16 16 H 1.09009 * 109.72686 * 326.85951 * 15 13 3 17 17 C 1.53401 * 109.70188 * 87.43254 * 15 13 3 18 18 O 1.42821 * 108.38369 * 184.39192 * 17 15 13 19 19 C 1.35857 * 117.77619 * 310.48608 * 18 17 15 20 20 C 1.39140 * 118.49618 * 196.82969 * 19 18 17 21 21 C 1.37964 * 120.21465 * 180.72698 * 20 19 18 22 22 C 1.38298 * 119.95752 * 0.25675 * 21 20 19 23 23 C 1.38107 * 119.98239 * 359.90091 * 22 21 20 24 24 C 1.38369 * 121.79171 * 17.94516 * 19 18 17 25 25 C 1.50759 * 121.40945 * 358.75985 * 24 19 18 26 26 H 1.08992 * 109.47061 * 300.00045 * 1 2 3 27 27 H 1.08998 * 109.46906 * 60.00002 * 1 2 3 28 28 H 1.09005 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47539 * 240.00034 * 2 1 3 30 30 H 1.09007 * 109.46817 * 119.99755 * 2 1 3 31 31 H 1.09002 * 109.46787 * 29.99896 * 4 3 2 32 32 H 1.08995 * 109.47262 * 149.99219 * 4 3 2 33 33 H 0.97001 * 119.99752 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.68140 * 304.11589 * 17 15 13 35 35 H 1.08998 * 109.68345 * 64.63084 * 17 15 13 36 36 H 1.08005 * 119.89330 * 0.99997 * 20 19 18 37 37 H 1.07999 * 120.02535 * 180.24228 * 21 20 19 38 38 H 1.07995 * 120.00494 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.84045 * 180.02562 * 23 22 21 40 40 H 1.09006 * 109.43911 * 138.23284 * 25 24 19 41 41 H 1.08997 * 109.43560 * 258.14090 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2515 2.0758 -1.2686 5 6 3.6709 1.8403 -1.7168 6 1 4.3333 1.2343 -1.1164 7 6 4.1240 2.3985 -2.8932 8 7 3.3172 3.1361 -3.6246 9 14 5.8833 2.1061 -3.4491 10 1 5.9387 0.8876 -4.2960 11 1 6.3556 3.2756 -4.2329 12 1 6.7540 1.9228 -2.2603 13 6 2.2531 2.0130 1.1672 14 8 2.5798 3.1810 1.1696 15 6 2.1099 1.2681 2.4693 16 1 1.3153 0.5267 2.3836 17 6 3.4321 0.5711 2.8145 18 8 3.2358 -0.2077 3.9955 19 6 2.6479 0.3958 5.0614 20 6 2.7638 -0.2046 6.3113 21 6 2.1681 0.3698 7.4152 22 6 1.4488 1.5432 7.2797 23 6 1.3290 2.1400 6.0400 24 6 1.9257 1.5685 4.9283 25 6 1.7775 2.2527 3.5932 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5641 1.6940 -2.0235 32 1 2.0856 3.1445 -1.1336 33 1 3.6359 3.5285 -4.4525 34 1 3.7304 -0.0786 1.9917 35 1 4.2057 1.3183 2.9913 36 1 3.3255 -1.1208 6.4184 37 1 2.2633 -0.0967 8.3846 38 1 0.9818 1.9932 8.1433 39 1 0.7671 3.0565 5.9369 40 1 0.7519 2.6030 3.4769 41 1 2.4586 3.1022 3.5434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110512985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:47 Heat of formation + Delta-G solvation = -75.083850 kcal Electronic energy + Delta-G solvation = -23197.153012 eV Core-core repulsion = 19848.052650 eV Total energy + Delta-G solvation = -3349.100362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04336 -40.53427 -38.39710 -37.10205 -35.39411 -34.76465 -31.95566 -31.58661 -31.16867 -29.11701 -26.83920 -25.96809 -24.62969 -23.92992 -23.40772 -21.33126 -19.84393 -18.85423 -18.64190 -18.32671 -17.59019 -17.09313 -16.52107 -16.41224 -15.92681 -15.73668 -15.29639 -14.92150 -14.78997 -14.69552 -14.35731 -14.25698 -14.16057 -13.81572 -13.58122 -13.29369 -13.10321 -12.77334 -12.68308 -12.57748 -12.38943 -12.21345 -12.09251 -11.92569 -11.87214 -11.73918 -11.59928 -10.65943 -10.65018 -9.72712 -9.50999 -9.14404 -8.23835 -6.38776 0.37154 0.47367 1.36494 1.39218 1.49028 1.61400 2.11381 2.30279 2.42318 2.82140 3.06231 3.39643 3.51685 3.59197 3.81394 3.93765 4.03019 4.11240 4.28260 4.32843 4.36380 4.40410 4.49973 4.56691 4.61954 4.69487 4.85102 4.90129 4.93120 4.94714 5.03392 5.11271 5.20379 5.34082 5.36311 5.54043 5.54959 5.61312 5.81286 5.86555 6.03860 6.39331 6.65300 6.72905 7.23518 7.38780 8.83515 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024444 B = 0.003966 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.179642 B = 7058.753166 C = 7310.338779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.597 5.597 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.511 3.489 14 O -0.589 6.589 15 C -0.132 4.132 16 H 0.123 0.877 17 C 0.081 3.919 18 O -0.313 6.313 19 C 0.101 3.899 20 C -0.156 4.156 21 C -0.087 4.087 22 C -0.149 4.149 23 C -0.093 4.093 24 C -0.166 4.166 25 C -0.060 4.060 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.023 0.977 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -9.762 20.020 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.299 3.701 14 O -0.470 6.470 15 C -0.154 4.154 16 H 0.141 0.859 17 C 0.005 3.995 18 O -0.227 6.227 19 C 0.056 3.944 20 C -0.174 4.174 21 C -0.105 4.105 22 C -0.167 4.167 23 C -0.111 4.111 24 C -0.167 4.167 25 C -0.097 4.097 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.169 0.831 39 H 0.154 0.846 40 H 0.107 0.893 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.975 -9.270 19.798 22.420 hybrid contribution 0.754 0.674 -1.198 1.568 sum -4.221 -8.595 18.600 20.920 Atomic orbital electron populations 1.22163 0.94596 1.03613 1.01669 1.21811 0.95388 0.81415 1.04029 1.48273 1.63219 1.15060 1.06168 1.18744 0.95531 0.91566 0.80139 1.21715 0.97905 1.32001 1.06644 0.92483 1.25858 1.02306 0.94414 0.96497 1.70060 1.37744 1.34034 1.14943 0.85416 0.78983 0.78149 0.78289 1.18822 1.20788 1.19597 1.20655 0.76888 0.86770 0.85819 1.90637 1.49651 1.18847 1.87820 1.21934 1.01460 0.99688 0.92298 0.85877 1.22760 0.94576 0.95719 0.86406 1.86020 1.76186 1.39398 1.21139 1.19098 0.94213 0.93123 0.87930 1.20878 1.04315 1.02702 0.89504 1.21324 0.95251 0.95231 0.98679 1.21393 1.01021 0.96716 0.97590 1.21166 0.98269 0.99858 0.91847 1.19877 1.02896 0.97488 0.96390 1.20284 1.03359 0.96867 0.89232 0.92551 0.93878 0.88529 0.90274 0.88537 0.95894 0.98381 0.92409 0.85902 0.92223 0.84038 0.82326 0.83092 0.84557 0.89288 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 10.11 71.98 0.73 -3.40 16 2 C 0.10 2.92 5.74 86.38 0.50 3.42 16 3 N -0.60 -25.06 2.46 -826.17 -2.03 -27.09 16 4 C 0.26 14.03 5.20 85.63 0.45 14.48 16 5 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 9 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.51 21.21 6.79 87.65 0.59 21.81 16 14 O -0.59 -30.34 15.43 -3.04 -0.05 -30.38 16 15 C -0.13 -4.03 1.89 -11.39 -0.02 -4.06 16 16 H 0.12 3.21 6.03 -2.38 -0.01 3.19 16 17 C 0.08 2.35 6.09 72.12 0.44 2.79 16 18 O -0.31 -8.57 10.27 -91.94 -0.94 -9.51 16 19 C 0.10 2.59 6.47 22.52 0.15 2.74 16 20 C -0.16 -3.18 9.94 22.42 0.22 -2.95 16 21 C -0.09 -1.38 10.04 22.22 0.22 -1.16 16 22 C -0.15 -2.44 10.05 22.25 0.22 -2.22 16 23 C -0.09 -1.93 9.67 22.30 0.22 -1.72 16 24 C -0.17 -4.23 5.75 -19.75 -0.11 -4.35 16 25 C -0.06 -1.75 4.96 29.89 0.15 -1.60 16 26 H 0.06 1.37 7.66 -2.39 -0.02 1.35 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 30 H 0.10 2.38 5.59 -2.38 -0.01 2.36 16 31 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.00 -0.12 7.37 -2.39 -0.02 -0.14 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.12 3.31 7.54 -2.39 -0.02 3.29 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.07 2.41 7.42 -2.39 -0.02 2.39 16 Total: -1.00 -72.59 338.52 4.76 -67.83 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.02 Total: 14.34 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 4.45 Total: -6.03 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.74 Total: -82.83 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.99 Total: -39.90 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.59 4.76 -67.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.256 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds