Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47324 * 2 1 4 4 C 1.46501 * 119.99862 * 270.40450 * 3 2 1 5 5 C 1.50705 * 109.47240 * 273.21697 * 4 3 2 6 6 H 1.07997 * 119.99912 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99653 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99603 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00541 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47313 * 89.99948 * 9 7 5 11 11 H 1.48502 * 109.47500 * 210.00052 * 9 7 5 12 12 H 1.48501 * 109.47243 * 330.00133 * 9 7 5 13 13 C 1.34775 * 120.00128 * 90.40792 * 3 2 1 14 14 O 1.21284 * 120.00294 * 5.13684 * 13 3 2 15 15 C 1.50706 * 120.00037 * 185.13845 * 13 3 2 16 16 H 1.09001 * 109.68824 * 33.72087 * 15 13 3 17 17 C 1.53402 * 109.69488 * 273.12545 * 15 13 3 18 18 O 1.42829 * 108.37538 * 175.60522 * 17 15 13 19 19 C 1.35843 * 117.92139 * 48.99571 * 18 17 15 20 20 C 1.39140 * 118.50793 * 162.60658 * 19 18 17 21 21 C 1.37971 * 120.21893 * 179.80919 * 20 19 18 22 22 C 1.38289 * 119.95650 * 0.29182 * 21 20 19 23 23 C 1.38105 * 119.98445 * 0.09741 * 22 21 20 24 24 C 1.38378 * 121.79953 * 343.15506 * 19 18 17 25 25 C 1.50775 * 121.40447 * 0.08629 * 24 19 18 26 26 H 1.09000 * 109.46879 * 303.71963 * 1 2 3 27 27 H 1.09002 * 109.46534 * 63.70773 * 1 2 3 28 28 H 1.08994 * 109.47483 * 183.71566 * 1 2 3 29 29 H 1.08998 * 109.46979 * 239.99729 * 2 1 3 30 30 H 1.09004 * 109.46765 * 120.00157 * 2 1 3 31 31 H 1.08994 * 109.47275 * 33.22081 * 4 3 2 32 32 H 1.08998 * 109.47254 * 153.22183 * 4 3 2 33 33 H 0.96996 * 119.99547 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.68548 * 295.33076 * 17 15 13 35 35 H 1.09007 * 109.68037 * 55.89236 * 17 15 13 36 36 H 1.08005 * 119.88697 * 0.07717 * 20 19 18 37 37 H 1.07999 * 120.01961 * 180.26310 * 21 20 19 38 38 H 1.07994 * 120.00709 * 180.08713 * 22 21 20 39 39 H 1.07996 * 119.84430 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.43611 * 102.45973 * 25 24 19 41 41 H 1.09001 * 109.43154 * 222.36810 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2541 2.0747 -1.2687 5 6 3.6491 1.7746 -1.7537 6 1 4.2952 1.1313 -1.1749 7 6 4.1000 2.3206 -2.9367 8 7 5.3172 2.0583 -3.3602 9 14 2.9821 3.4328 -3.9381 10 1 3.1686 4.8411 -3.5056 11 1 3.3213 3.3083 -5.3785 12 1 1.5677 3.0332 -3.7263 13 6 2.2509 2.0137 1.1671 14 8 2.1456 1.4117 2.2147 15 6 2.6416 3.4693 1.1706 16 1 2.1450 3.9847 0.3485 17 6 4.1627 3.5966 1.0183 18 8 4.4910 4.9833 0.9216 19 6 3.9611 5.8282 1.8439 20 6 4.5369 7.0851 2.0014 21 6 4.0246 7.9728 2.9250 22 6 2.9391 7.6113 3.7018 23 6 2.3700 6.3617 3.5539 24 6 2.8807 5.4660 2.6290 25 6 2.2361 4.1090 2.5007 26 1 -0.3633 0.5705 0.8548 27 1 -0.3632 0.4552 -0.9214 28 1 -0.3634 -1.0254 0.0666 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5308 1.7335 -2.0092 32 1 2.1440 3.1491 -1.1214 33 1 5.6342 2.4421 -4.1926 34 1 4.6564 3.1621 1.8875 35 1 4.4858 3.0790 0.1150 36 1 5.3849 7.3683 1.3955 37 1 4.4714 8.9491 3.0416 38 1 2.5366 8.3060 4.4241 39 1 1.5226 6.0816 4.1620 40 1 2.5627 3.4732 3.3235 41 1 1.1521 4.2178 2.5346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110512987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = -53.921988 kcal Electronic energy + Delta-G solvation = -23622.503115 eV Core-core repulsion = 20274.320400 eV Total energy + Delta-G solvation = -3348.182715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69321 -39.16348 -37.18614 -35.50590 -33.99011 -32.75985 -31.23935 -30.10855 -29.90005 -27.73273 -25.48977 -24.51055 -22.79112 -22.54253 -22.16277 -20.02171 -18.23544 -17.63808 -17.07267 -16.91873 -16.20842 -15.43516 -15.38429 -14.94748 -14.46579 -14.28058 -13.86093 -13.75525 -13.41267 -13.19669 -12.99792 -12.90351 -12.78332 -12.50882 -12.21165 -11.89534 -11.72174 -11.62404 -11.25279 -11.09801 -10.86892 -10.74369 -10.55394 -10.42248 -10.31616 -10.23731 -9.68546 -9.21482 -8.76291 -8.67390 -7.97126 -7.87084 -6.28481 -4.31241 1.41232 1.55650 3.09464 3.16314 3.22227 3.25473 3.54575 3.71848 3.92217 4.22319 4.79245 4.84226 4.98199 5.02162 5.08912 5.12117 5.24364 5.36325 5.49664 5.56756 5.62425 5.66942 5.74851 5.78207 5.84332 6.00575 6.07871 6.15274 6.23920 6.27836 6.35415 6.42899 6.47991 6.48961 6.58823 6.61711 6.66106 6.90943 7.22721 7.36545 7.73311 7.99968 8.31730 8.70434 8.78569 9.30508 10.83307 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.006302 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.044791 B = 4441.719834 C = 5816.405428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.586 5.586 4 C 0.203 3.797 5 C -0.547 4.547 6 H 0.080 0.920 7 C 0.082 3.918 8 N -0.884 5.884 9 Si 0.868 3.132 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.527 3.473 14 O -0.564 6.564 15 C -0.142 4.142 16 H 0.106 0.894 17 C 0.070 3.930 18 O -0.303 6.303 19 C 0.135 3.865 20 C -0.152 4.152 21 C -0.092 4.092 22 C -0.160 4.160 23 C -0.085 4.085 24 C -0.157 4.157 25 C -0.063 4.063 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.268 0.732 34 H 0.063 0.937 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 7.013 9.233 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.316 5.316 4 C 0.082 3.918 5 C -0.585 4.585 6 H 0.099 0.901 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.694 3.306 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.189 1.189 13 C 0.314 3.686 14 O -0.445 6.445 15 C -0.163 4.163 16 H 0.124 0.876 17 C -0.005 4.005 18 O -0.216 6.216 19 C 0.089 3.911 20 C -0.171 4.171 21 C -0.110 4.110 22 C -0.179 4.179 23 C -0.103 4.103 24 C -0.158 4.158 25 C -0.100 4.100 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.165 0.835 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.192 6.744 9.418 13.135 hybrid contribution -0.638 0.505 -0.749 1.106 sum -6.829 7.249 8.670 13.204 Atomic orbital electron populations 1.22123 0.96792 1.01496 1.01778 1.21296 0.93249 0.83324 1.03151 1.47949 1.63014 1.13674 1.06933 1.19929 0.98101 0.92676 0.81133 1.21299 0.97230 1.32234 1.07747 0.90149 1.24845 0.94839 0.95682 0.96910 1.69880 1.16410 1.43624 1.22179 0.86972 0.81556 0.81939 0.80142 1.19510 1.20795 1.18934 1.19984 0.76824 0.88201 0.83548 1.90602 1.54250 1.67888 1.31723 1.21922 0.99327 0.94993 1.00089 0.87608 1.23266 0.92176 0.78979 1.06112 1.86121 1.68188 1.18736 1.48597 1.18908 0.91753 0.91013 0.89383 1.20625 1.02094 0.92829 1.01540 1.20868 0.96154 0.98770 0.95238 1.20931 0.98323 0.96892 1.01730 1.20855 0.99283 0.93174 0.96987 1.19899 0.97847 0.97886 1.00130 1.20378 1.00349 0.92034 0.97263 0.92892 0.92705 0.92119 0.89992 0.90633 0.94753 0.94942 0.92189 0.91906 0.83463 0.85288 0.85790 0.86247 0.86047 0.89015 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 37.16 0.38 -2.01 16 2 C 0.11 1.96 6.19 -4.04 -0.03 1.94 16 3 N -0.59 -11.54 2.46 -175.06 -0.43 -11.97 16 4 C 0.20 4.32 4.04 -5.19 -0.02 4.29 16 5 C -0.55 -13.70 7.98 -34.44 -0.27 -13.98 16 6 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.88 -24.94 13.96 55.43 0.77 -24.17 16 9 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 13 C 0.53 10.36 6.79 -10.98 -0.07 10.28 16 14 O -0.56 -11.98 15.42 5.55 0.09 -11.89 16 15 C -0.14 -2.55 1.99 -91.53 -0.18 -2.73 16 16 H 0.11 1.92 6.15 -51.93 -0.32 1.60 16 17 C 0.07 1.32 6.28 37.37 0.23 1.55 16 18 O -0.30 -5.76 10.27 -19.25 -0.20 -5.96 16 19 C 0.14 2.27 6.47 -39.20 -0.25 2.01 16 20 C -0.15 -2.20 9.94 -39.34 -0.39 -2.59 16 21 C -0.09 -1.11 10.04 -39.66 -0.40 -1.51 16 22 C -0.16 -1.88 10.04 -39.61 -0.40 -2.28 16 23 C -0.08 -1.10 9.67 -39.53 -0.38 -1.48 16 24 C -0.16 -2.42 5.75 -104.43 -0.60 -3.02 16 25 C -0.06 -0.99 4.95 -27.81 -0.14 -1.13 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 30 H 0.08 1.34 7.35 -51.93 -0.38 0.96 16 31 H 0.03 0.73 7.15 -51.93 -0.37 0.35 16 32 H 0.03 0.68 5.11 -51.93 -0.27 0.42 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.15 3.17 5.91 -51.92 -0.31 2.86 16 36 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.09 1.50 7.42 -51.93 -0.39 1.12 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -28.78 332.63 -7.89 -36.67 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.84 Total: 6.02 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.62 Total: -8.59 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.34 Total: -36.13 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.11 Total: -17.85 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.78 -7.89 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.252 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds