Wall clock time and date at job start Tue Mar 31 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47324 * 2 1 4 4 C 1.46501 * 119.99862 * 270.40450 * 3 2 1 5 5 C 1.50705 * 109.47240 * 273.21697 * 4 3 2 6 6 H 1.07997 * 119.99912 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99653 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99603 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00541 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47313 * 89.99948 * 9 7 5 11 11 H 1.48502 * 109.47500 * 210.00052 * 9 7 5 12 12 H 1.48501 * 109.47243 * 330.00133 * 9 7 5 13 13 C 1.34775 * 120.00128 * 90.40792 * 3 2 1 14 14 O 1.21284 * 120.00294 * 5.13684 * 13 3 2 15 15 C 1.50706 * 120.00037 * 185.13845 * 13 3 2 16 16 H 1.09001 * 109.68824 * 33.72087 * 15 13 3 17 17 C 1.53402 * 109.69488 * 273.12545 * 15 13 3 18 18 O 1.42829 * 108.37538 * 175.60522 * 17 15 13 19 19 C 1.35843 * 117.92139 * 48.99571 * 18 17 15 20 20 C 1.39140 * 118.50793 * 162.60658 * 19 18 17 21 21 C 1.37971 * 120.21893 * 179.80919 * 20 19 18 22 22 C 1.38289 * 119.95650 * 0.29182 * 21 20 19 23 23 C 1.38105 * 119.98445 * 0.09741 * 22 21 20 24 24 C 1.38378 * 121.79953 * 343.15506 * 19 18 17 25 25 C 1.50775 * 121.40447 * 0.08629 * 24 19 18 26 26 H 1.09000 * 109.46879 * 303.71963 * 1 2 3 27 27 H 1.09002 * 109.46534 * 63.70773 * 1 2 3 28 28 H 1.08994 * 109.47483 * 183.71566 * 1 2 3 29 29 H 1.08998 * 109.46979 * 239.99729 * 2 1 3 30 30 H 1.09004 * 109.46765 * 120.00157 * 2 1 3 31 31 H 1.08994 * 109.47275 * 33.22081 * 4 3 2 32 32 H 1.08998 * 109.47254 * 153.22183 * 4 3 2 33 33 H 0.96996 * 119.99547 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.68548 * 295.33076 * 17 15 13 35 35 H 1.09007 * 109.68037 * 55.89236 * 17 15 13 36 36 H 1.08005 * 119.88697 * 0.07717 * 20 19 18 37 37 H 1.07999 * 120.01961 * 180.26310 * 21 20 19 38 38 H 1.07994 * 120.00709 * 180.08713 * 22 21 20 39 39 H 1.07996 * 119.84430 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.43611 * 102.45973 * 25 24 19 41 41 H 1.09001 * 109.43154 * 222.36810 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2541 2.0747 -1.2687 5 6 3.6491 1.7746 -1.7537 6 1 4.2952 1.1313 -1.1749 7 6 4.1000 2.3206 -2.9367 8 7 5.3172 2.0583 -3.3602 9 14 2.9821 3.4328 -3.9381 10 1 3.1686 4.8411 -3.5056 11 1 3.3213 3.3083 -5.3785 12 1 1.5677 3.0332 -3.7263 13 6 2.2509 2.0137 1.1671 14 8 2.1456 1.4117 2.2147 15 6 2.6416 3.4693 1.1706 16 1 2.1450 3.9847 0.3485 17 6 4.1627 3.5966 1.0183 18 8 4.4910 4.9833 0.9216 19 6 3.9611 5.8282 1.8439 20 6 4.5369 7.0851 2.0014 21 6 4.0246 7.9728 2.9250 22 6 2.9391 7.6113 3.7018 23 6 2.3700 6.3617 3.5539 24 6 2.8807 5.4660 2.6290 25 6 2.2361 4.1090 2.5007 26 1 -0.3633 0.5705 0.8548 27 1 -0.3632 0.4552 -0.9214 28 1 -0.3634 -1.0254 0.0666 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5308 1.7335 -2.0092 32 1 2.1440 3.1491 -1.1214 33 1 5.6342 2.4421 -4.1926 34 1 4.6564 3.1621 1.8875 35 1 4.4858 3.0790 0.1150 36 1 5.3849 7.3683 1.3955 37 1 4.4714 8.9491 3.0416 38 1 2.5366 8.3060 4.4241 39 1 1.5226 6.0816 4.1620 40 1 2.5627 3.4732 3.3235 41 1 1.1521 4.2178 2.5346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110512987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:50 Heat of formation + Delta-G solvation = -69.893854 kcal Electronic energy + Delta-G solvation = -23623.195707 eV Core-core repulsion = 20274.320400 eV Total energy + Delta-G solvation = -3348.875307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03268 -40.61467 -38.38027 -37.12787 -35.35505 -34.66023 -32.59986 -31.31472 -31.11538 -29.51890 -26.78560 -25.85928 -24.59065 -23.80364 -23.34006 -21.28670 -19.82266 -19.09540 -18.76037 -18.43176 -17.63424 -16.87032 -16.59331 -16.45429 -16.06749 -15.60520 -15.25775 -15.02205 -14.75615 -14.64551 -14.45718 -14.28168 -14.15494 -13.93304 -13.67873 -13.36670 -13.23103 -12.70042 -12.63475 -12.62634 -12.33862 -12.13494 -12.04150 -11.91179 -11.78465 -11.67701 -11.54670 -10.85811 -10.70671 -9.72501 -9.52244 -9.12308 -8.31716 -6.38148 0.37321 0.48322 1.37891 1.39935 1.46986 1.51042 2.10192 2.32170 2.36954 2.82877 3.02716 3.43178 3.57232 3.62352 3.81829 3.95207 4.04492 4.21364 4.28931 4.34598 4.37034 4.47093 4.50593 4.57799 4.65852 4.68643 4.73323 4.80793 4.91724 4.93148 4.95468 5.02605 5.11747 5.28453 5.38795 5.42020 5.53724 5.59981 5.65172 5.90501 6.13799 6.46249 6.53075 6.66524 7.13729 7.28609 8.83751 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.006302 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.044791 B = 4441.719834 C = 5816.405428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.212 3.788 5 C -0.537 4.537 6 H 0.037 0.963 7 C 0.027 3.973 8 N -0.936 5.936 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.237 1.237 13 C 0.525 3.475 14 O -0.581 6.581 15 C -0.136 4.136 16 H 0.105 0.895 17 C 0.078 3.922 18 O -0.326 6.326 19 C 0.096 3.904 20 C -0.166 4.166 21 C -0.085 4.085 22 C -0.149 4.149 23 C -0.086 4.086 24 C -0.170 4.170 25 C -0.054 4.054 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.268 0.732 34 H 0.060 0.940 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 9.249 10.363 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 N -0.320 5.320 4 C 0.090 3.910 5 C -0.576 4.576 6 H 0.055 0.945 7 C -0.173 4.173 8 N -0.575 5.575 9 Si 0.753 3.247 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.160 1.160 13 C 0.313 3.687 14 O -0.463 6.463 15 C -0.157 4.157 16 H 0.123 0.877 17 C 0.003 3.997 18 O -0.240 6.240 19 C 0.051 3.949 20 C -0.184 4.184 21 C -0.103 4.103 22 C -0.167 4.167 23 C -0.104 4.104 24 C -0.171 4.171 25 C -0.091 4.091 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.148 0.852 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.101 0.899 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.881 8.970 10.568 16.462 hybrid contribution 0.274 -0.168 -0.966 1.018 sum -8.607 8.802 9.602 15.612 Atomic orbital electron populations 1.22024 0.93963 1.03228 1.01764 1.21479 0.95539 0.82064 1.02600 1.48028 1.63029 1.14534 1.06423 1.19740 0.95814 0.93437 0.82013 1.21394 0.98506 1.30654 1.07000 0.94485 1.25662 0.96113 0.97269 0.98212 1.70029 1.18702 1.45721 1.22998 0.85979 0.80960 0.79696 0.78114 1.19385 1.20932 1.15951 1.20267 0.76290 0.88861 0.83239 1.90583 1.55011 1.68496 1.32176 1.21870 0.98261 0.93954 1.01638 0.87710 1.22899 0.93080 0.79579 1.04161 1.86059 1.69191 1.18480 1.50269 1.19295 0.93373 0.91650 0.90544 1.20876 1.02480 0.92545 1.02512 1.21296 0.95843 0.99484 0.93693 1.21409 0.97267 0.96725 1.01311 1.21192 0.99806 0.93197 0.96237 1.19966 0.97922 0.98130 1.01113 1.20310 1.01393 0.92163 0.95273 0.93439 0.92129 0.89472 0.90368 0.91417 0.93342 0.93917 0.92259 0.92196 0.86835 0.85154 0.82410 0.82556 0.83566 0.89931 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 10.24 71.98 0.74 -3.38 16 2 C 0.11 3.64 6.19 86.38 0.53 4.18 16 3 N -0.59 -23.34 2.46 -826.15 -2.03 -25.37 16 4 C 0.21 8.95 4.04 85.63 0.35 9.30 16 5 C -0.54 -27.84 7.98 25.60 0.20 -27.64 16 6 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 7 C 0.03 1.47 5.47 84.65 0.46 1.93 16 8 N -0.94 -54.95 13.96 21.45 0.30 -54.65 16 9 Si 0.93 40.09 27.47 68.60 1.88 41.98 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 13 C 0.53 20.85 6.79 87.66 0.60 21.45 16 14 O -0.58 -24.84 15.42 -3.04 -0.05 -24.88 16 15 C -0.14 -4.94 1.99 -11.38 -0.02 -4.96 16 16 H 0.10 3.79 6.15 -2.39 -0.01 3.78 16 17 C 0.08 3.13 6.28 72.12 0.45 3.59 16 18 O -0.33 -12.92 10.27 -91.78 -0.94 -13.86 16 19 C 0.10 3.21 6.47 22.52 0.15 3.36 16 20 C -0.17 -4.61 9.94 22.42 0.22 -4.38 16 21 C -0.09 -1.76 10.04 22.22 0.22 -1.54 16 22 C -0.15 -2.84 10.04 22.25 0.22 -2.62 16 23 C -0.09 -1.96 9.67 22.30 0.22 -1.75 16 24 C -0.17 -5.05 5.75 -19.74 -0.11 -5.16 16 25 C -0.05 -1.67 4.95 29.89 0.15 -1.52 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 30 H 0.07 2.43 7.35 -2.39 -0.02 2.41 16 31 H 0.05 1.95 7.15 -2.39 -0.02 1.93 16 32 H 0.04 1.75 5.11 -2.39 -0.01 1.74 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.11 5.28 5.91 -2.38 -0.01 5.27 16 36 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 40 H 0.08 2.68 7.42 -2.39 -0.02 2.66 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -64.89 332.63 4.51 -60.38 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.97 Total: 25.57 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 4.38 Total: -9.16 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.73 Total: -80.03 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.99 Total: -38.74 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.88 Total: 41.98 kcal Total: -64.89 4.51 -60.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110512987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.516 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds