Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46654 * 2 1 4 4 C 1.37096 * 119.99536 * 264.76821 * 3 2 1 5 5 H 1.08005 * 119.99680 * 138.85525 * 4 3 2 6 6 C 1.38947 * 120.00463 * 318.85537 * 4 3 2 7 7 N 1.31409 * 119.99970 * 341.82496 * 6 4 3 8 8 Si 1.86800 * 120.00158 * 161.83113 * 6 4 3 9 9 H 1.48503 * 109.47194 * 89.99927 * 8 6 4 10 10 H 1.48505 * 109.47264 * 209.99783 * 8 6 4 11 11 H 1.48496 * 109.47304 * 329.99959 * 8 6 4 12 12 C 1.34775 * 120.00043 * 84.77378 * 3 2 1 13 13 O 1.21287 * 119.99743 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00129 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47005 * 180.02562 * 14 12 3 16 16 H 1.08998 * 109.21043 * 305.39250 * 15 14 12 17 17 O 1.42722 * 109.34363 * 65.00396 * 15 14 12 18 18 C 1.43212 * 113.13116 * 172.06000 * 17 15 14 19 19 C 1.52970 * 108.48599 * 289.32800 * 18 17 15 20 20 C 1.50744 * 109.77086 * 49.17314 * 19 18 17 21 21 C 1.38605 * 118.76618 * 163.02156 * 20 19 18 22 22 C 1.38065 * 120.27281 * 179.78413 * 21 20 19 23 23 C 1.38256 * 119.86786 * 359.97438 * 22 21 20 24 24 C 1.38054 * 119.89433 * 0.09592 * 23 22 21 25 25 C 1.37903 * 121.35376 * 342.97348 * 20 19 18 26 26 H 1.09001 * 109.46854 * 299.99735 * 1 2 3 27 27 H 1.08992 * 109.46968 * 60.00156 * 1 2 3 28 28 H 1.09000 * 109.46595 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47225 * 240.00439 * 2 1 3 30 30 H 1.09001 * 109.47486 * 119.99616 * 2 1 3 31 31 H 0.96998 * 120.00520 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46890 * 60.00104 * 14 12 3 33 33 H 1.09004 * 109.47165 * 300.00593 * 14 12 3 34 34 H 1.08993 * 109.63098 * 49.02921 * 18 17 15 35 35 H 1.08994 * 109.63453 * 169.62839 * 18 17 15 36 36 H 1.09000 * 109.41615 * 169.26404 * 19 18 17 37 37 H 1.08996 * 109.42221 * 289.14320 * 19 18 17 38 38 H 1.07992 * 119.86007 * 359.77006 * 21 20 19 39 39 H 1.08002 * 120.06465 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.05603 * 180.12208 * 23 22 21 41 41 H 1.08000 * 119.85106 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0741 3.0219 -1.3535 6 6 3.0370 1.2843 -2.1606 7 7 3.6791 0.1820 -1.8452 8 14 3.0497 1.9005 -3.9240 9 1 4.2053 2.8121 -4.1215 10 1 3.1658 0.7462 -4.8510 11 1 1.7883 2.6333 -4.2014 12 6 2.1426 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7789 1.3816 2.4619 15 6 2.0099 2.3545 3.6199 16 1 3.0363 2.7195 3.5824 17 8 1.1114 3.4566 3.4977 18 6 1.1310 4.3272 4.6347 19 6 0.4791 3.6012 5.8128 20 6 1.0725 2.2227 5.9538 21 6 0.8931 1.5379 7.1455 22 6 1.4195 0.2718 7.3067 23 6 2.1279 -0.3159 6.2751 24 6 2.3083 0.3661 5.0883 25 6 1.7825 1.6385 4.9260 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5138 0.8900 31 1 4.1593 -0.3120 -2.5281 32 1 2.4004 0.4969 2.6007 33 1 0.7294 1.0881 2.4381 34 1 2.1614 4.5796 4.8849 35 1 0.5725 5.2358 4.4100 36 1 0.6537 4.1664 6.7283 37 1 -0.5935 3.5169 5.6379 38 1 0.3396 1.9968 7.9512 39 1 1.2780 -0.2586 8.2368 40 1 2.5393 -1.3069 6.3972 41 1 2.8622 -0.0935 4.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115046242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -54.041947 kcal Electronic energy + Delta-G solvation = -23434.315111 eV Core-core repulsion = 20086.127194 eV Total energy + Delta-G solvation = -3348.187917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32384 -38.39481 -37.22125 -34.86841 -33.46795 -32.17381 -31.81018 -29.79449 -29.32914 -28.25122 -25.14086 -23.86415 -23.52540 -22.25962 -21.52995 -19.93067 -18.67813 -17.20594 -16.64657 -16.19336 -15.84261 -15.46108 -15.18561 -14.85699 -14.40042 -14.11678 -13.90953 -13.51341 -13.45861 -12.99271 -12.83158 -12.75257 -12.29194 -12.12901 -11.96149 -11.73652 -11.62441 -11.38260 -11.05138 -10.98782 -10.85746 -10.72094 -10.45459 -10.29418 -10.22916 -10.02114 -9.30636 -8.84208 -8.76012 -8.58364 -8.20462 -7.31159 -6.24337 -3.91510 1.33933 1.37153 3.22748 3.30357 3.35916 3.72306 3.99615 4.16065 4.23881 4.64495 4.69767 4.83399 4.99210 5.04206 5.09386 5.12277 5.28700 5.40283 5.46651 5.54794 5.64037 5.68168 5.82831 5.88396 5.91376 5.97413 6.04256 6.10206 6.16340 6.27138 6.31948 6.44666 6.49668 6.51166 6.59111 6.67089 6.94410 6.99439 7.28371 7.52916 7.66214 8.39798 8.62818 9.30757 9.50543 10.14849 10.81170 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.004328 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.564223 B = 6467.943531 C = 7029.326811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.447 5.447 4 C -0.304 4.304 5 H 0.086 0.914 6 C 0.037 3.963 7 N -0.875 5.875 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.468 3.532 13 O -0.568 6.568 14 C -0.128 4.128 15 C 0.149 3.851 16 H 0.078 0.922 17 O -0.350 6.350 18 C 0.058 3.942 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.109 4.109 25 C -0.105 4.105 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.266 0.734 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -1.788 15.644 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.167 5.167 4 C -0.432 4.432 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.513 5.513 8 Si 0.743 3.257 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.256 3.744 13 O -0.450 6.450 14 C -0.168 4.168 15 C 0.091 3.909 16 H 0.095 0.905 17 O -0.268 6.268 18 C -0.019 4.019 19 C -0.152 4.152 20 C -0.075 4.075 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.106 4.106 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.390 -1.332 15.350 16.324 hybrid contribution 0.171 -0.137 -0.507 0.552 sum -5.220 -1.469 14.843 15.803 Atomic orbital electron populations 1.22234 0.98355 1.00211 1.01626 1.21425 0.91543 0.85782 1.03217 1.43423 1.56755 1.11701 1.04822 1.19349 1.34388 0.98444 0.91001 0.89620 1.25394 0.94197 0.96612 1.00447 1.69923 1.29863 1.17693 1.33860 0.86112 0.78929 0.78271 0.82430 1.20362 1.20930 1.19450 1.20163 0.81767 0.87854 0.84613 1.90527 1.49452 1.18373 1.86687 1.21807 1.03509 0.97979 0.93504 1.20588 0.94267 0.86325 0.89723 0.90462 1.88227 1.62516 1.36917 1.39106 1.22541 1.00156 0.93258 0.85939 1.21168 1.01040 0.93063 0.99969 1.19539 0.98052 0.96414 0.93449 1.21021 1.00766 0.95246 0.96934 1.21060 0.98707 0.95471 0.98934 1.21089 0.99534 0.99957 0.93521 1.21177 0.99621 0.94038 0.97864 1.20439 0.98180 0.95461 0.96480 0.93781 0.92439 0.93242 0.87959 0.93593 0.92438 0.88736 0.89485 0.92913 0.88612 0.90123 0.89863 0.86285 0.86274 0.86010 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.15 37.16 0.38 -2.70 16 2 C 0.10 2.30 5.41 -4.03 -0.02 2.27 16 3 N -0.45 -11.53 2.50 -114.81 -0.29 -11.82 16 4 C -0.30 -8.60 8.84 -14.93 -0.13 -8.73 16 5 H 0.09 2.55 7.82 -52.48 -0.41 2.14 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.91 16 7 N -0.88 -23.93 11.61 55.50 0.64 -23.28 16 8 Si 0.92 20.99 29.59 -169.99 -5.03 15.96 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.47 11.75 7.47 -10.99 -0.08 11.67 16 13 O -0.57 -16.28 15.31 -9.00 -0.14 -16.41 16 14 C -0.13 -2.47 3.72 -27.89 -0.10 -2.57 16 15 C 0.15 2.71 2.28 -27.90 -0.06 2.64 16 16 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 17 O -0.35 -6.66 9.66 -49.79 -0.48 -7.14 16 18 C 0.06 0.82 6.85 37.14 0.25 1.08 16 19 C -0.12 -1.36 6.00 -27.88 -0.17 -1.53 16 20 C -0.07 -1.00 5.78 -104.59 -0.60 -1.61 16 21 C -0.12 -1.39 9.67 -39.51 -0.38 -1.77 16 22 C -0.12 -1.34 10.05 -39.64 -0.40 -1.74 16 23 C -0.12 -1.43 10.05 -39.64 -0.40 -1.82 16 24 C -0.11 -1.48 9.08 -39.50 -0.36 -1.84 16 25 C -0.11 -1.59 5.47 -104.61 -0.57 -2.17 16 26 H 0.04 0.78 6.60 -51.93 -0.34 0.44 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.47 5.76 -51.93 -0.30 2.17 16 30 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.09 1.64 5.56 -51.93 -0.29 1.35 16 33 H 0.09 1.60 6.54 -51.93 -0.34 1.26 16 34 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.65 6.44 -52.49 -0.34 1.31 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -32.79 330.32 -8.77 -41.56 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.71 Total: 4.06 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.74 Total: -7.90 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.36 Total: -35.10 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.62 Total: -23.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.79 -8.77 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115046242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.486 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds