Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46654 * 2 1 4 4 C 1.37096 * 119.99536 * 264.76821 * 3 2 1 5 5 H 1.08005 * 119.99680 * 138.85525 * 4 3 2 6 6 C 1.38947 * 120.00463 * 318.85537 * 4 3 2 7 7 N 1.31409 * 119.99970 * 341.82496 * 6 4 3 8 8 Si 1.86800 * 120.00158 * 161.83113 * 6 4 3 9 9 H 1.48503 * 109.47194 * 89.99927 * 8 6 4 10 10 H 1.48505 * 109.47264 * 209.99783 * 8 6 4 11 11 H 1.48496 * 109.47304 * 329.99959 * 8 6 4 12 12 C 1.34775 * 120.00043 * 84.77378 * 3 2 1 13 13 O 1.21287 * 119.99743 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00129 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47005 * 180.02562 * 14 12 3 16 16 H 1.08998 * 109.21043 * 305.39250 * 15 14 12 17 17 O 1.42722 * 109.34363 * 65.00396 * 15 14 12 18 18 C 1.43212 * 113.13116 * 172.06000 * 17 15 14 19 19 C 1.52970 * 108.48599 * 289.32800 * 18 17 15 20 20 C 1.50744 * 109.77086 * 49.17314 * 19 18 17 21 21 C 1.38605 * 118.76618 * 163.02156 * 20 19 18 22 22 C 1.38065 * 120.27281 * 179.78413 * 21 20 19 23 23 C 1.38256 * 119.86786 * 359.97438 * 22 21 20 24 24 C 1.38054 * 119.89433 * 0.09592 * 23 22 21 25 25 C 1.37903 * 121.35376 * 342.97348 * 20 19 18 26 26 H 1.09001 * 109.46854 * 299.99735 * 1 2 3 27 27 H 1.08992 * 109.46968 * 60.00156 * 1 2 3 28 28 H 1.09000 * 109.46595 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47225 * 240.00439 * 2 1 3 30 30 H 1.09001 * 109.47486 * 119.99616 * 2 1 3 31 31 H 0.96998 * 120.00520 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46890 * 60.00104 * 14 12 3 33 33 H 1.09004 * 109.47165 * 300.00593 * 14 12 3 34 34 H 1.08993 * 109.63098 * 49.02921 * 18 17 15 35 35 H 1.08994 * 109.63453 * 169.62839 * 18 17 15 36 36 H 1.09000 * 109.41615 * 169.26404 * 19 18 17 37 37 H 1.08996 * 109.42221 * 289.14320 * 19 18 17 38 38 H 1.07992 * 119.86007 * 359.77006 * 21 20 19 39 39 H 1.08002 * 120.06465 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.05603 * 180.12208 * 23 22 21 41 41 H 1.08000 * 119.85106 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0741 3.0219 -1.3535 6 6 3.0370 1.2843 -2.1606 7 7 3.6791 0.1820 -1.8452 8 14 3.0497 1.9005 -3.9240 9 1 4.2053 2.8121 -4.1215 10 1 3.1658 0.7462 -4.8510 11 1 1.7883 2.6333 -4.2014 12 6 2.1426 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7789 1.3816 2.4619 15 6 2.0099 2.3545 3.6199 16 1 3.0363 2.7195 3.5824 17 8 1.1114 3.4566 3.4977 18 6 1.1310 4.3272 4.6347 19 6 0.4791 3.6012 5.8128 20 6 1.0725 2.2227 5.9538 21 6 0.8931 1.5379 7.1455 22 6 1.4195 0.2718 7.3067 23 6 2.1279 -0.3159 6.2751 24 6 2.3083 0.3661 5.0883 25 6 1.7825 1.6385 4.9260 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5138 0.8900 31 1 4.1593 -0.3120 -2.5281 32 1 2.4004 0.4969 2.6007 33 1 0.7294 1.0881 2.4381 34 1 2.1614 4.5796 4.8849 35 1 0.5725 5.2358 4.4100 36 1 0.6537 4.1664 6.7283 37 1 -0.5935 3.5169 5.6379 38 1 0.3396 1.9968 7.9512 39 1 1.2780 -0.2586 8.2368 40 1 2.5393 -1.3069 6.3972 41 1 2.8622 -0.0935 4.2831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115046242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -72.846925 kcal Electronic energy + Delta-G solvation = -23435.130556 eV Core-core repulsion = 20086.127194 eV Total energy + Delta-G solvation = -3349.003362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49129 -40.18625 -38.40667 -36.82851 -34.73774 -33.94060 -33.10034 -31.15735 -30.86295 -29.52520 -26.97398 -25.15698 -24.66475 -23.89631 -22.74083 -20.96893 -20.51829 -18.74177 -18.31107 -17.70879 -17.10324 -16.96349 -16.66453 -16.27333 -15.91459 -15.57185 -15.23042 -14.93479 -14.61328 -14.50306 -14.20878 -14.06333 -13.77208 -13.55674 -13.40104 -13.09923 -12.98281 -12.84598 -12.65135 -12.61853 -12.45276 -12.16053 -12.04980 -11.82590 -11.78849 -11.51792 -10.86954 -10.54183 -10.29295 -9.68045 -9.52045 -9.35379 -8.31736 -6.07540 0.38166 0.45869 1.38121 1.40678 1.53605 2.11438 2.31260 2.75336 2.89543 3.03983 3.08177 3.64379 3.72013 3.87982 3.97998 4.11206 4.17035 4.23362 4.29006 4.32863 4.37479 4.50460 4.60127 4.63789 4.65706 4.71892 4.81163 4.86647 4.93393 4.99782 5.05561 5.09763 5.19434 5.29972 5.47209 5.54264 5.55644 5.61022 5.67029 6.10105 6.24296 6.29818 6.60372 7.23283 7.50551 8.13940 8.72302 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025435 B = 0.004328 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.564223 B = 6467.943531 C = 7029.326811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.459 5.459 4 C -0.340 4.340 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.980 3.020 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.268 1.268 12 C 0.453 3.547 13 O -0.617 6.617 14 C -0.111 4.111 15 C 0.156 3.844 16 H 0.045 0.955 17 O -0.386 6.386 18 C 0.048 3.952 19 C -0.107 4.107 20 C -0.089 4.089 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.129 4.129 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.273 0.727 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -3.433 17.652 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 N -0.178 5.178 4 C -0.469 4.469 5 H 0.074 0.926 6 C -0.197 4.197 7 N -0.530 5.530 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.190 1.190 11 H -0.193 1.193 12 C 0.242 3.758 13 O -0.503 6.503 14 C -0.151 4.151 15 C 0.097 3.903 16 H 0.063 0.937 17 O -0.305 6.305 18 C -0.029 4.029 19 C -0.144 4.144 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.129 4.129 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.578 -3.016 17.368 18.816 hybrid contribution 0.574 0.374 -1.070 1.271 sum -6.005 -2.642 16.298 17.569 Atomic orbital electron populations 1.22117 0.95571 1.02459 1.01109 1.21547 0.93802 0.83596 1.03068 1.43728 1.56653 1.13003 1.04464 1.19297 1.36458 0.98013 0.93093 0.92578 1.26118 0.93138 0.96637 1.03832 1.69982 1.29571 1.18194 1.35240 0.85165 0.78665 0.78202 0.77656 1.20539 1.18965 1.19255 1.21117 0.80859 0.87516 0.86278 1.90475 1.51553 1.20606 1.87670 1.21702 1.04236 0.98401 0.90772 1.20345 0.92576 0.86232 0.91118 0.93679 1.88149 1.62633 1.37917 1.41817 1.22824 1.00599 0.93537 0.85907 1.21143 1.00870 0.92497 0.99852 1.19802 0.97992 0.97246 0.93842 1.21361 1.00395 0.95425 0.96623 1.21508 0.96991 0.95231 0.99765 1.21403 0.99204 1.00848 0.92743 1.21268 1.00042 0.93827 0.99046 1.20207 1.00843 0.96326 0.95563 0.93152 0.94078 0.89507 0.90131 0.91549 0.91774 0.86928 0.88310 0.93412 0.87235 0.87030 0.89189 0.83321 0.82956 0.83583 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 10.15 71.98 0.73 -4.85 16 2 C 0.10 4.54 5.41 86.38 0.47 5.01 16 3 N -0.46 -24.56 2.50 -635.53 -1.59 -26.15 16 4 C -0.34 -20.12 8.84 84.04 0.74 -19.38 16 5 H 0.06 3.56 7.82 -2.91 -0.02 3.54 16 6 C 0.01 0.28 4.95 84.93 0.42 0.70 16 7 N -0.89 -49.24 11.61 21.66 0.25 -48.99 16 8 Si 0.98 43.64 29.59 68.60 2.03 45.67 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 C 0.45 23.83 7.47 87.66 0.65 24.49 16 13 O -0.62 -37.74 15.31 10.87 0.17 -37.57 16 14 C -0.11 -4.42 3.72 29.85 0.11 -4.31 16 15 C 0.16 5.89 2.28 29.84 0.07 5.95 16 16 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 17 O -0.39 -15.34 9.66 -135.06 -1.30 -16.64 16 18 C 0.05 1.37 6.85 71.97 0.49 1.86 16 19 C -0.11 -2.33 6.00 29.85 0.18 -2.15 16 20 C -0.09 -2.23 5.78 -19.84 -0.11 -2.34 16 21 C -0.12 -2.30 9.67 22.32 0.22 -2.09 16 22 C -0.12 -2.06 10.05 22.23 0.22 -1.83 16 23 C -0.12 -2.51 10.05 22.23 0.22 -2.29 16 24 C -0.12 -3.23 9.08 22.32 0.20 -3.03 16 25 C -0.13 -3.87 5.47 -19.86 -0.11 -3.98 16 26 H 0.05 1.74 6.60 -2.39 -0.02 1.72 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.08 3.92 5.76 -2.39 -0.01 3.90 16 30 H 0.07 2.59 6.66 -2.39 -0.02 2.58 16 31 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.11 3.96 5.56 -2.39 -0.01 3.94 16 33 H 0.10 3.65 6.54 -2.38 -0.02 3.63 16 34 H 0.05 1.37 8.07 -2.39 -0.02 1.35 16 35 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.12 3.18 6.44 -2.91 -0.02 3.16 16 Total: -1.00 -75.19 330.32 5.09 -70.10 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.03 Total: 21.82 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.51 Total: -8.23 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.34 Total: -75.14 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -1.14 Total: -54.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.19 5.09 -70.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115046242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.752 kcal (2) G-P(sol) polarization free energy of solvation -75.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds