Wall clock time and date at job start Tue Mar 31 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47349 * 2 1 4 4 C 1.37094 * 119.99673 * 94.63895 * 3 2 1 5 5 H 1.08007 * 119.99749 * 217.88570 * 4 3 2 6 6 C 1.38952 * 120.00590 * 38.15623 * 4 3 2 7 7 N 1.31412 * 119.99722 * 19.21541 * 6 4 3 8 8 Si 1.86798 * 120.00305 * 199.21283 * 6 4 3 9 9 H 1.48493 * 109.47041 * 90.00065 * 8 6 4 10 10 H 1.48501 * 109.46909 * 210.00193 * 8 6 4 11 11 H 1.48501 * 109.46977 * 329.99691 * 8 6 4 12 12 C 1.34769 * 120.00077 * 274.63055 * 3 2 1 13 13 O 1.21300 * 120.00196 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00167 * 0.02562 * 12 3 2 15 15 C 1.52996 * 109.47199 * 179.97438 * 14 12 3 16 16 H 1.08997 * 109.34061 * 54.99918 * 15 14 12 17 17 O 1.42725 * 109.33775 * 295.32520 * 15 14 12 18 18 C 1.43171 * 113.17022 * 187.88033 * 17 15 14 19 19 C 1.52972 * 108.31999 * 70.94454 * 18 17 15 20 20 C 1.50745 * 109.75433 * 310.72352 * 19 18 17 21 21 C 1.38595 * 118.76018 * 196.87572 * 20 19 18 22 22 C 1.38078 * 120.27281 * 180.24765 * 21 20 19 23 23 C 1.38255 * 119.86353 * 359.97438 * 22 21 20 24 24 C 1.38060 * 119.89751 * 359.91621 * 23 22 21 25 25 C 1.37906 * 121.35137 * 16.95893 * 20 19 18 26 26 H 1.08994 * 109.46703 * 300.00114 * 1 2 3 27 27 H 1.08997 * 109.47115 * 59.99634 * 1 2 3 28 28 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47085 * 240.00093 * 2 1 3 30 30 H 1.08997 * 109.47115 * 120.00366 * 2 1 3 31 31 H 0.96994 * 120.00097 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46890 * 299.99776 * 14 12 3 33 33 H 1.09002 * 109.46911 * 59.99467 * 14 12 3 34 34 H 1.08997 * 109.73858 * 311.27465 * 18 17 15 35 35 H 1.09000 * 109.67365 * 190.57173 * 18 17 15 36 36 H 1.09002 * 109.42525 * 190.63927 * 19 18 17 37 37 H 1.08995 * 109.42673 * 70.80945 * 19 18 17 38 38 H 1.07993 * 119.86406 * 0.21663 * 21 20 19 39 39 H 1.07998 * 120.06392 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.05293 * 179.91158 * 23 22 21 41 41 H 1.07999 * 119.84926 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3374 1.9954 1.1834 5 1 2.1083 3.0409 1.3281 6 6 2.9606 1.2743 2.1946 7 7 3.5796 0.1496 1.9140 8 14 2.9186 1.9038 3.9529 9 1 1.7214 1.3617 4.6442 10 1 4.1442 1.4626 4.6659 11 1 2.8569 3.3875 3.9461 12 6 2.1542 2.0479 -1.1633 13 8 2.5581 3.1917 -1.1633 14 6 1.8031 1.3729 -2.4642 15 6 2.0456 2.3417 -3.6232 16 1 3.0733 2.7027 -3.5829 17 8 1.1512 3.4481 -3.5093 18 6 1.1819 4.3168 -4.6470 19 6 0.5277 3.5909 -5.8239 20 6 1.1136 2.2086 -5.9593 21 6 0.9306 1.5202 -7.1482 22 6 1.4495 0.2502 -7.3042 23 6 2.1549 -0.3371 -6.2702 24 6 2.3395 0.3489 -5.0864 25 6 1.8196 1.6244 -4.9287 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0143 -0.3539 2.6199 32 1 2.4259 0.4877 -2.5938 33 1 0.7534 1.0797 -2.4496 34 1 2.2146 4.5613 -4.8956 35 1 0.6289 5.2298 -4.4266 36 1 0.7073 4.1520 -6.7410 37 1 -0.5457 3.5142 -5.6511 38 1 0.3796 1.9789 -7.9558 39 1 1.3052 -0.2830 -8.2322 40 1 2.5608 -1.3308 -6.3884 41 1 2.8910 -0.1104 -4.2794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115046244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:54 Heat of formation + Delta-G solvation = -53.500258 kcal Electronic energy + Delta-G solvation = -23434.966461 eV Core-core repulsion = 20086.802034 eV Total energy + Delta-G solvation = -3348.164427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32668 -38.39992 -37.22486 -34.88426 -33.46697 -32.16730 -31.80152 -29.79664 -29.33967 -28.25144 -25.15022 -23.86581 -23.52556 -22.25120 -21.53276 -19.93317 -18.67506 -17.20521 -16.65628 -16.19844 -15.84853 -15.47611 -15.19056 -14.83474 -14.39866 -14.12020 -13.90792 -13.51305 -13.45866 -12.99408 -12.81790 -12.75135 -12.29842 -12.12620 -11.95921 -11.73834 -11.63062 -11.38761 -11.04442 -11.01319 -10.85177 -10.72457 -10.45323 -10.27323 -10.20486 -10.01743 -9.30407 -8.85967 -8.76060 -8.58429 -8.20946 -7.35130 -6.24558 -3.89542 1.33827 1.37047 3.22227 3.30429 3.35809 3.72175 3.99072 4.15763 4.23010 4.64528 4.69819 4.83367 4.99185 5.03868 5.09381 5.12500 5.28631 5.40117 5.46703 5.54748 5.63986 5.67758 5.82818 5.88634 5.91406 5.97725 6.04149 6.10137 6.16392 6.27507 6.32819 6.44741 6.49813 6.51186 6.59351 6.67094 6.95729 6.99345 7.31831 7.53238 7.66803 8.37132 8.62068 9.29928 9.51071 10.14042 10.80041 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.004324 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.835172 B = 6474.087819 C = 7047.010180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.446 5.446 4 C -0.302 4.302 5 H 0.089 0.911 6 C 0.035 3.965 7 N -0.875 5.875 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.466 3.534 13 O -0.569 6.569 14 C -0.127 4.127 15 C 0.150 3.850 16 H 0.078 0.922 17 O -0.350 6.350 18 C 0.058 3.942 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.109 4.109 25 C -0.106 4.106 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.266 0.734 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.335 -1.758 -15.734 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.166 5.166 4 C -0.430 4.430 5 H 0.106 0.894 6 C -0.168 4.168 7 N -0.514 5.514 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.254 3.746 13 O -0.452 6.452 14 C -0.167 4.167 15 C 0.091 3.909 16 H 0.095 0.905 17 O -0.268 6.268 18 C -0.019 4.019 19 C -0.153 4.153 20 C -0.074 4.074 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.106 4.106 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.141 -1.295 -15.438 16.323 hybrid contribution 0.111 -0.143 0.500 0.532 sum -5.030 -1.438 -14.937 15.827 Atomic orbital electron populations 1.22219 0.98370 1.00184 1.01574 1.21495 0.91596 0.85737 1.03568 1.43456 1.56627 1.11791 1.04756 1.19431 1.36878 0.96932 0.89794 0.89357 1.25361 0.94398 0.96629 1.00453 1.69910 1.31825 1.16444 1.33183 0.86074 0.77500 0.79507 0.82518 1.20436 1.21098 1.19375 1.20135 0.81962 0.87886 0.84627 1.90531 1.49520 1.18366 1.86756 1.21789 1.03502 0.97964 0.93447 1.20589 0.94319 0.86230 0.89723 0.90481 1.88218 1.62531 1.36704 1.39309 1.22538 1.00126 0.93317 0.85898 1.21173 1.01089 0.93014 0.99988 1.19536 0.98048 0.96394 0.93451 1.21022 1.00781 0.95195 0.96972 1.21062 0.98745 0.95445 0.98918 1.21089 0.99537 0.99948 0.93534 1.21179 0.99638 0.93996 0.97892 1.20447 0.98216 0.95456 0.96471 0.92470 0.93843 0.93256 0.93628 0.87420 0.92414 0.88760 0.89508 0.92906 0.88610 0.90146 0.89861 0.86284 0.86272 0.86012 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.16 37.16 0.38 -2.71 16 2 C 0.10 2.21 5.43 -4.04 -0.02 2.19 16 3 N -0.45 -11.52 2.53 -114.81 -0.29 -11.81 16 4 C -0.30 -8.55 8.90 -14.93 -0.13 -8.68 16 5 H 0.09 2.63 7.76 -52.48 -0.41 2.22 16 6 C 0.03 0.94 4.96 -17.47 -0.09 0.85 16 7 N -0.87 -23.82 11.44 55.50 0.63 -23.19 16 8 Si 0.92 20.98 29.60 -169.99 -5.03 15.95 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.47 11.69 7.47 -10.99 -0.08 11.61 16 13 O -0.57 -16.29 15.27 -9.34 -0.14 -16.43 16 14 C -0.13 -2.45 3.71 -27.88 -0.10 -2.55 16 15 C 0.15 2.71 2.28 -27.91 -0.06 2.65 16 16 H 0.08 1.50 7.95 -51.93 -0.41 1.09 16 17 O -0.35 -6.66 9.62 -50.11 -0.48 -7.14 16 18 C 0.06 0.83 6.85 37.14 0.25 1.08 16 19 C -0.12 -1.37 6.00 -27.88 -0.17 -1.53 16 20 C -0.07 -1.00 5.78 -104.59 -0.60 -1.60 16 21 C -0.12 -1.39 9.67 -39.51 -0.38 -1.78 16 22 C -0.12 -1.34 10.05 -39.63 -0.40 -1.74 16 23 C -0.12 -1.42 10.05 -39.64 -0.40 -1.82 16 24 C -0.11 -1.48 9.08 -39.50 -0.36 -1.84 16 25 C -0.11 -1.60 5.46 -104.61 -0.57 -2.17 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.78 6.67 -51.93 -0.35 0.43 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.90 6.63 -51.93 -0.34 0.56 16 30 H 0.11 2.61 5.54 -51.93 -0.29 2.32 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.09 1.63 5.59 -51.93 -0.29 1.34 16 33 H 0.09 1.60 6.60 -51.93 -0.34 1.26 16 34 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.64 6.46 -52.49 -0.34 1.30 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -32.67 330.10 -8.78 -41.45 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.71 Total: 4.23 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.74 Total: -8.05 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.34 Total: -34.99 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.62 Total: -23.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.67 -8.78 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115046244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.047 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds