Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47349 * 2 1 4 4 C 1.37094 * 119.99673 * 94.63895 * 3 2 1 5 5 H 1.08007 * 119.99749 * 217.88570 * 4 3 2 6 6 C 1.38952 * 120.00590 * 38.15623 * 4 3 2 7 7 N 1.31412 * 119.99722 * 19.21541 * 6 4 3 8 8 Si 1.86798 * 120.00305 * 199.21283 * 6 4 3 9 9 H 1.48493 * 109.47041 * 90.00065 * 8 6 4 10 10 H 1.48501 * 109.46909 * 210.00193 * 8 6 4 11 11 H 1.48501 * 109.46977 * 329.99691 * 8 6 4 12 12 C 1.34769 * 120.00077 * 274.63055 * 3 2 1 13 13 O 1.21300 * 120.00196 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00167 * 0.02562 * 12 3 2 15 15 C 1.52996 * 109.47199 * 179.97438 * 14 12 3 16 16 H 1.08997 * 109.34061 * 54.99918 * 15 14 12 17 17 O 1.42725 * 109.33775 * 295.32520 * 15 14 12 18 18 C 1.43171 * 113.17022 * 187.88033 * 17 15 14 19 19 C 1.52972 * 108.31999 * 70.94454 * 18 17 15 20 20 C 1.50745 * 109.75433 * 310.72352 * 19 18 17 21 21 C 1.38595 * 118.76018 * 196.87572 * 20 19 18 22 22 C 1.38078 * 120.27281 * 180.24765 * 21 20 19 23 23 C 1.38255 * 119.86353 * 359.97438 * 22 21 20 24 24 C 1.38060 * 119.89751 * 359.91621 * 23 22 21 25 25 C 1.37906 * 121.35137 * 16.95893 * 20 19 18 26 26 H 1.08994 * 109.46703 * 300.00114 * 1 2 3 27 27 H 1.08997 * 109.47115 * 59.99634 * 1 2 3 28 28 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47085 * 240.00093 * 2 1 3 30 30 H 1.08997 * 109.47115 * 120.00366 * 2 1 3 31 31 H 0.96994 * 120.00097 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46890 * 299.99776 * 14 12 3 33 33 H 1.09002 * 109.46911 * 59.99467 * 14 12 3 34 34 H 1.08997 * 109.73858 * 311.27465 * 18 17 15 35 35 H 1.09000 * 109.67365 * 190.57173 * 18 17 15 36 36 H 1.09002 * 109.42525 * 190.63927 * 19 18 17 37 37 H 1.08995 * 109.42673 * 70.80945 * 19 18 17 38 38 H 1.07993 * 119.86406 * 0.21663 * 21 20 19 39 39 H 1.07998 * 120.06392 * 180.02562 * 22 21 20 40 40 H 1.07995 * 120.05293 * 179.91158 * 23 22 21 41 41 H 1.07999 * 119.84926 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3374 1.9954 1.1834 5 1 2.1083 3.0409 1.3281 6 6 2.9606 1.2743 2.1946 7 7 3.5796 0.1496 1.9140 8 14 2.9186 1.9038 3.9529 9 1 1.7214 1.3617 4.6442 10 1 4.1442 1.4626 4.6659 11 1 2.8569 3.3875 3.9461 12 6 2.1542 2.0479 -1.1633 13 8 2.5581 3.1917 -1.1633 14 6 1.8031 1.3729 -2.4642 15 6 2.0456 2.3417 -3.6232 16 1 3.0733 2.7027 -3.5829 17 8 1.1512 3.4481 -3.5093 18 6 1.1819 4.3168 -4.6470 19 6 0.5277 3.5909 -5.8239 20 6 1.1136 2.2086 -5.9593 21 6 0.9306 1.5202 -7.1482 22 6 1.4495 0.2502 -7.3042 23 6 2.1549 -0.3371 -6.2702 24 6 2.3395 0.3489 -5.0864 25 6 1.8196 1.6244 -4.9287 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.0143 -0.3539 2.6199 32 1 2.4259 0.4877 -2.5938 33 1 0.7534 1.0797 -2.4496 34 1 2.2146 4.5613 -4.8956 35 1 0.6289 5.2298 -4.4266 36 1 0.7073 4.1520 -6.7410 37 1 -0.5457 3.5142 -5.6511 38 1 0.3796 1.9789 -7.9558 39 1 1.3052 -0.2830 -8.2322 40 1 2.5608 -1.3308 -6.3884 41 1 2.8910 -0.1104 -4.2794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115046244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -72.164302 kcal Electronic energy + Delta-G solvation = -23435.775795 eV Core-core repulsion = 20086.802034 eV Total energy + Delta-G solvation = -3348.973761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49317 -40.19060 -38.40849 -36.84345 -34.73449 -33.92945 -33.09637 -31.16929 -30.86383 -29.52509 -26.98096 -25.15681 -24.66262 -23.89309 -22.74202 -20.97048 -20.51226 -18.74541 -18.32073 -17.71748 -17.11315 -16.95493 -16.65095 -16.27463 -15.91051 -15.57502 -15.23008 -14.93345 -14.60748 -14.50154 -14.20676 -14.06251 -13.77893 -13.56392 -13.39614 -13.10219 -12.98381 -12.83765 -12.64755 -12.61446 -12.43854 -12.17189 -12.04750 -11.83036 -11.78942 -11.51899 -10.86666 -10.53909 -10.29405 -9.68020 -9.52074 -9.39119 -8.31426 -6.05136 0.38146 0.45883 1.38397 1.41037 1.53058 2.10827 2.30899 2.75367 2.89308 3.04334 3.08273 3.64429 3.72027 3.88047 3.98014 4.10958 4.17129 4.23487 4.29171 4.32794 4.37363 4.50554 4.60258 4.63856 4.66093 4.71909 4.81232 4.86620 4.93443 4.99772 5.05328 5.09752 5.19412 5.31284 5.47306 5.54391 5.57725 5.61000 5.67052 6.10108 6.23342 6.29731 6.59329 7.22874 7.51122 8.13544 8.71529 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.004324 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.835172 B = 6474.087819 C = 7047.010180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.458 5.458 4 C -0.340 4.340 5 H 0.057 0.943 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.981 3.019 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.451 3.549 13 O -0.618 6.618 14 C -0.111 4.111 15 C 0.156 3.844 16 H 0.046 0.954 17 O -0.386 6.386 18 C 0.048 3.952 19 C -0.107 4.107 20 C -0.089 4.089 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.129 4.129 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.273 0.727 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 -3.456 -17.713 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.178 5.178 4 C -0.468 4.468 5 H 0.075 0.925 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.804 3.196 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.203 1.203 12 C 0.240 3.760 13 O -0.504 6.504 14 C -0.150 4.150 15 C 0.098 3.902 16 H 0.064 0.936 17 O -0.305 6.305 18 C -0.029 4.029 19 C -0.144 4.144 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.131 0.869 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.341 -3.035 -17.427 18.791 hybrid contribution 0.520 0.380 1.061 1.241 sum -5.820 -2.655 -16.366 17.572 Atomic orbital electron populations 1.22104 0.95653 1.02399 1.01044 1.21617 0.93811 0.83594 1.03452 1.43754 1.56527 1.13074 1.04398 1.19345 1.39162 0.96341 0.91929 0.92472 1.26080 0.93296 0.96689 1.03741 1.69972 1.31422 1.16947 1.34541 0.85134 0.78336 0.78379 0.77702 1.18699 1.19978 1.20261 1.21092 0.81038 0.87560 0.86288 1.90480 1.51613 1.20601 1.87735 1.21687 1.04235 0.98383 0.90713 1.20350 0.92641 0.86144 0.91113 0.93639 1.88140 1.62668 1.37711 1.42012 1.22819 1.00580 0.93598 0.85857 1.21146 1.00908 0.92450 0.99881 1.19798 0.98003 0.97225 0.93845 1.21361 1.00405 0.95384 0.96668 1.21510 0.97031 0.95215 0.99742 1.21405 0.99190 1.00846 0.92761 1.21272 1.00055 0.93770 0.99074 1.20215 1.00877 0.96315 0.95556 0.94151 0.93203 0.89560 0.91534 0.89564 0.91736 0.86921 0.88370 0.93372 0.87259 0.87056 0.89218 0.83337 0.82961 0.83577 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 10.16 71.98 0.73 -4.87 16 2 C 0.10 4.35 5.43 86.38 0.47 4.82 16 3 N -0.46 -24.52 2.53 -635.53 -1.61 -26.12 16 4 C -0.34 -20.07 8.90 84.04 0.75 -19.32 16 5 H 0.06 3.65 7.76 -2.91 -0.02 3.63 16 6 C 0.00 0.23 4.96 84.93 0.42 0.65 16 7 N -0.89 -48.89 11.44 21.66 0.25 -48.64 16 8 Si 0.98 43.59 29.60 68.60 2.03 45.62 16 9 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.45 23.71 7.47 87.66 0.66 24.36 16 13 O -0.62 -37.78 15.27 11.14 0.17 -37.61 16 14 C -0.11 -4.38 3.71 29.85 0.11 -4.27 16 15 C 0.16 5.89 2.28 29.83 0.07 5.96 16 16 H 0.05 1.93 7.95 -2.39 -0.02 1.92 16 17 O -0.39 -15.36 9.62 -134.75 -1.30 -16.66 16 18 C 0.05 1.37 6.85 71.97 0.49 1.87 16 19 C -0.11 -2.34 6.00 29.85 0.18 -2.16 16 20 C -0.09 -2.23 5.78 -19.84 -0.11 -2.34 16 21 C -0.12 -2.31 9.67 22.32 0.22 -2.09 16 22 C -0.12 -2.06 10.05 22.24 0.22 -1.83 16 23 C -0.12 -2.50 10.05 22.23 0.22 -2.28 16 24 C -0.12 -3.22 9.08 22.32 0.20 -3.02 16 25 C -0.13 -3.87 5.46 -19.86 -0.11 -3.98 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.73 6.67 -2.39 -0.02 1.72 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.07 2.60 6.63 -2.38 -0.02 2.58 16 30 H 0.09 4.21 5.54 -2.39 -0.01 4.20 16 31 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.11 3.95 5.59 -2.39 -0.01 3.94 16 33 H 0.10 3.63 6.60 -2.39 -0.02 3.61 16 34 H 0.05 1.38 8.07 -2.39 -0.02 1.36 16 35 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.12 3.16 6.46 -2.91 -0.02 3.15 16 Total: -1.00 -74.92 330.10 5.09 -69.83 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 1.03 Total: 22.10 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 4.52 Total: -8.52 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.36 Total: -74.76 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -1.13 Total: -54.27 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -74.92 5.09 -69.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115046244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.333 kcal (2) G-P(sol) polarization free energy of solvation -74.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds