Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47271 * 2 1 4 4 C 1.36908 * 120.00096 * 294.25397 * 3 2 1 5 5 H 1.07993 * 119.99994 * 153.25048 * 4 3 2 6 6 C 1.39020 * 119.99698 * 332.97408 * 4 3 2 7 7 N 1.31381 * 120.00217 * 22.47792 * 6 4 3 8 8 Si 1.86800 * 120.00011 * 202.46697 * 6 4 3 9 9 H 1.48509 * 109.46906 * 90.00310 * 8 6 4 10 10 H 1.48501 * 109.47528 * 210.00274 * 8 6 4 11 11 H 1.48498 * 109.47070 * 330.00855 * 8 6 4 12 12 C 1.34773 * 119.99882 * 114.25659 * 3 2 1 13 13 O 1.21624 * 120.00098 * 166.03184 * 12 3 2 14 14 C 1.47431 * 120.00385 * 346.02834 * 12 3 2 15 15 C 1.39769 * 120.19453 * 322.80523 * 14 12 3 16 16 C 1.37765 * 119.90105 * 179.97438 * 15 14 12 17 17 C 1.38565 * 120.31018 * 0.02562 * 16 15 14 18 18 C 1.38077 * 120.39466 * 359.97438 * 17 16 15 19 19 C 1.38690 * 120.09227 * 359.70286 * 18 17 16 20 20 O 1.35653 * 120.15098 * 180.29409 * 19 18 17 21 21 C 1.42900 * 117.00697 * 5.55958 * 20 19 18 22 22 C 1.53782 * 113.61631 * 255.45288 * 21 20 19 23 23 C 1.53787 * 87.07751 * 220.01236 * 22 21 20 24 24 C 1.53777 * 113.61911 * 157.94687 * 21 20 19 25 25 H 1.08997 * 109.47076 * 226.41231 * 1 2 3 26 26 H 1.09002 * 109.46625 * 346.40428 * 1 2 3 27 27 H 1.08990 * 109.47372 * 106.40350 * 1 2 3 28 28 H 1.08996 * 109.46941 * 240.00144 * 2 1 3 29 29 H 1.09004 * 109.47331 * 120.00158 * 2 1 3 30 30 H 0.97002 * 120.00296 * 180.02562 * 7 6 4 31 31 H 1.08004 * 120.05146 * 359.97438 * 15 14 12 32 32 H 1.08006 * 119.84755 * 180.02562 * 16 15 14 33 33 H 1.07989 * 119.80447 * 179.97438 * 17 16 15 34 34 H 1.08001 * 119.95282 * 179.97438 * 18 17 16 35 35 H 1.09005 * 112.84420 * 26.75406 * 21 20 19 36 36 H 1.09001 * 113.61226 * 334.56038 * 22 21 20 37 37 H 1.08996 * 113.61410 * 105.46781 * 22 21 20 38 38 H 1.08999 * 113.61387 * 270.88020 * 23 22 21 39 39 H 1.09005 * 113.60662 * 139.97832 * 23 22 21 40 40 H 1.08994 * 113.61985 * 254.53534 * 24 21 20 41 41 H 1.09008 * 113.61255 * 25.35634 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7874 2.1889 -1.0810 5 1 1.7373 3.2602 -0.9537 6 6 1.6231 1.6305 -2.3434 7 7 1.2501 0.3765 -2.4636 8 14 1.9323 2.6632 -3.8690 9 1 3.3563 2.5376 -4.2714 10 1 1.0619 2.1871 -4.9740 11 1 1.6249 4.0858 -3.5744 12 6 2.6951 1.8566 1.0641 13 8 3.3161 2.8985 0.9739 14 6 2.6825 1.1139 2.3377 15 6 1.5214 0.4593 2.7582 16 6 1.5166 -0.2333 3.9491 17 6 2.6579 -0.2841 4.7332 18 6 3.8118 0.3581 4.3298 19 6 3.8371 1.0546 3.1307 20 8 4.9718 1.6809 2.7303 21 6 6.1395 1.4819 3.5298 22 6 6.4952 2.6902 4.4121 23 6 7.9669 2.4115 4.0637 24 6 7.4541 1.7444 2.7764 25 1 -0.3633 -0.7085 0.7443 26 1 -0.3633 0.9989 0.2416 27 1 -0.3633 -0.2902 -0.9857 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.1358 -0.0133 -3.3445 31 1 0.6293 0.4964 2.1506 32 1 0.6190 -0.7392 4.2731 33 1 2.6449 -0.8291 5.6654 34 1 4.6972 0.3142 4.9467 35 1 6.1268 0.5346 4.0690 36 1 6.1264 3.6390 4.0224 37 1 6.2611 2.5449 5.4666 38 1 8.4545 1.7191 4.7499 39 1 8.5516 3.3139 3.8847 40 1 7.9940 0.8357 2.5106 41 1 7.3471 2.4337 1.9387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118217063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = 0.480842 kcal Electronic energy + Delta-G solvation = -23600.685614 eV Core-core repulsion = 20254.861983 eV Total energy + Delta-G solvation = -3345.823631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25092 -38.84054 -37.41706 -35.95332 -34.89358 -31.98858 -30.46384 -29.57546 -29.20768 -25.68687 -25.47704 -25.10722 -22.91261 -21.87629 -21.70038 -19.78792 -19.21656 -17.89607 -16.78101 -16.27961 -15.88693 -15.49995 -14.94087 -14.72679 -14.23713 -14.14585 -14.05908 -13.67641 -13.29941 -12.76859 -12.61010 -12.42968 -12.35640 -11.94362 -11.63108 -11.37393 -11.32694 -11.19708 -11.17046 -11.02326 -10.72127 -10.66037 -10.35703 -10.25707 -10.19681 -10.14676 -9.78979 -8.68138 -8.50681 -8.25943 -7.76019 -7.67767 -6.29109 -3.75612 1.49324 1.79634 3.22034 3.30828 3.35572 3.57545 3.80404 4.15562 4.42442 4.54644 4.57316 4.76955 4.80419 4.85571 5.12256 5.16634 5.21219 5.33905 5.51251 5.59732 5.71485 5.76832 5.80795 5.83938 5.94702 5.95790 6.08569 6.20581 6.28586 6.33296 6.59804 6.65754 6.68796 6.76920 6.84008 6.89789 7.14810 7.41628 7.61914 7.73292 7.87042 8.21925 8.62271 9.27227 9.49219 10.10327 10.66198 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.005632 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.941819 B = 4970.775710 C = 6335.879460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.100 3.900 3 N -0.440 5.440 4 C -0.296 4.296 5 H 0.095 0.905 6 C 0.041 3.959 7 N -0.861 5.861 8 Si 0.915 3.085 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.488 3.512 13 O -0.572 6.572 14 C -0.130 4.130 15 C -0.060 4.060 16 C -0.170 4.170 17 C -0.080 4.080 18 C -0.224 4.224 19 C 0.164 3.836 20 O -0.270 6.270 21 C 0.048 3.952 22 C -0.155 4.155 23 C -0.140 4.140 24 C -0.131 4.131 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -4.125 12.468 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 N -0.159 5.159 4 C -0.423 4.423 5 H 0.113 0.887 6 C -0.163 4.163 7 N -0.500 5.500 8 Si 0.741 3.259 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.195 1.195 12 C 0.277 3.723 13 O -0.456 6.456 14 C -0.134 4.134 15 C -0.079 4.079 16 C -0.189 4.189 17 C -0.099 4.099 18 C -0.242 4.242 19 C 0.117 3.883 20 O -0.181 6.181 21 C -0.009 4.009 22 C -0.192 4.192 23 C -0.177 4.177 24 C -0.168 4.168 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.789 -3.607 12.042 13.840 hybrid contribution 0.033 0.133 -0.514 0.532 sum 5.822 -3.473 11.528 13.374 Atomic orbital electron populations 1.22023 0.96921 0.99657 1.01354 1.22216 0.94403 0.84071 1.01572 1.43643 1.46230 1.11338 1.14651 1.19465 1.46643 0.91522 0.84666 0.88702 1.25381 0.95802 0.96088 0.99022 1.69933 1.42355 1.13763 1.23960 0.86118 0.78583 0.80388 0.80762 1.20332 1.21197 1.19451 1.17652 0.83689 0.87236 0.83741 1.90627 1.44844 1.26002 1.84147 1.19783 0.92500 1.03330 0.97825 1.21552 0.97444 0.93486 0.95437 1.20909 0.98594 1.03401 0.95967 1.20881 0.92434 0.97666 0.98875 1.21079 1.00088 1.05437 0.97629 1.19034 0.86490 0.90957 0.91831 1.86425 1.15667 1.65579 1.50473 1.24175 0.84470 0.98562 0.93699 1.23493 0.96036 0.99961 0.99743 1.22647 0.96247 1.01215 0.97626 1.23158 0.93685 1.01730 0.98226 0.95626 0.93419 0.90718 0.87084 0.94290 0.92292 0.84282 0.86097 0.86315 0.85725 0.88716 0.88680 0.91250 0.90056 0.90562 0.90813 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 7.89 37.16 0.29 -2.67 16 2 C 0.10 2.33 4.83 -4.04 -0.02 2.31 16 3 N -0.44 -11.63 2.61 -116.03 -0.30 -11.93 16 4 C -0.30 -8.30 8.62 -15.00 -0.13 -8.43 16 5 H 0.10 2.80 7.73 -52.49 -0.41 2.39 16 6 C 0.04 1.07 5.42 -17.45 -0.09 0.97 16 7 N -0.86 -22.07 8.38 55.50 0.47 -21.60 16 8 Si 0.91 21.00 29.61 -169.99 -5.03 15.97 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.49 12.93 7.03 -12.52 -0.09 12.85 16 13 O -0.57 -17.08 15.93 -11.65 -0.19 -17.27 16 14 C -0.13 -2.85 5.03 -104.85 -0.53 -3.38 16 15 C -0.06 -1.12 7.52 -39.18 -0.29 -1.41 16 16 C -0.17 -2.56 10.02 -39.63 -0.40 -2.96 16 17 C -0.08 -1.11 10.03 -39.52 -0.40 -1.51 16 18 C -0.22 -3.46 9.00 -39.47 -0.36 -3.81 16 19 C 0.16 3.24 6.66 -38.68 -0.26 2.98 16 20 O -0.27 -5.45 8.85 -35.56 -0.31 -5.76 16 21 C 0.05 0.69 3.64 -25.92 -0.09 0.59 16 22 C -0.15 -1.91 7.91 -25.92 -0.21 -2.12 16 23 C -0.14 -1.42 8.08 -25.91 -0.21 -1.63 16 24 C -0.13 -1.66 7.91 -25.92 -0.21 -1.87 16 25 H 0.02 0.44 7.82 -51.93 -0.41 0.04 16 26 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 27 H 0.07 1.65 6.84 -51.93 -0.35 1.30 16 28 H 0.11 2.80 5.76 -51.93 -0.30 2.50 16 29 H 0.04 0.83 5.15 -51.93 -0.27 0.56 16 30 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 31 H 0.14 2.58 4.98 -52.48 -0.26 2.32 16 32 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.57 5.94 -52.49 -0.31 1.26 16 35 H 0.10 1.17 6.03 -51.93 -0.31 0.86 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -31.61 327.50 -8.95 -40.56 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.54 Total: 5.19 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.98 Total: -10.09 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.16 Total: -33.54 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.50 Total: -23.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.61 -8.95 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118217063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds