Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47271 * 2 1 4 4 C 1.36908 * 120.00096 * 294.25397 * 3 2 1 5 5 H 1.07993 * 119.99994 * 153.25048 * 4 3 2 6 6 C 1.39020 * 119.99698 * 332.97408 * 4 3 2 7 7 N 1.31381 * 120.00217 * 22.47792 * 6 4 3 8 8 Si 1.86800 * 120.00011 * 202.46697 * 6 4 3 9 9 H 1.48509 * 109.46906 * 90.00310 * 8 6 4 10 10 H 1.48501 * 109.47528 * 210.00274 * 8 6 4 11 11 H 1.48498 * 109.47070 * 330.00855 * 8 6 4 12 12 C 1.34773 * 119.99882 * 114.25659 * 3 2 1 13 13 O 1.21624 * 120.00098 * 166.03184 * 12 3 2 14 14 C 1.47431 * 120.00385 * 346.02834 * 12 3 2 15 15 C 1.39769 * 120.19453 * 322.80523 * 14 12 3 16 16 C 1.37765 * 119.90105 * 179.97438 * 15 14 12 17 17 C 1.38565 * 120.31018 * 0.02562 * 16 15 14 18 18 C 1.38077 * 120.39466 * 359.97438 * 17 16 15 19 19 C 1.38690 * 120.09227 * 359.70286 * 18 17 16 20 20 O 1.35653 * 120.15098 * 180.29409 * 19 18 17 21 21 C 1.42900 * 117.00697 * 5.55958 * 20 19 18 22 22 C 1.53782 * 113.61631 * 255.45288 * 21 20 19 23 23 C 1.53787 * 87.07751 * 220.01236 * 22 21 20 24 24 C 1.53777 * 113.61911 * 157.94687 * 21 20 19 25 25 H 1.08997 * 109.47076 * 226.41231 * 1 2 3 26 26 H 1.09002 * 109.46625 * 346.40428 * 1 2 3 27 27 H 1.08990 * 109.47372 * 106.40350 * 1 2 3 28 28 H 1.08996 * 109.46941 * 240.00144 * 2 1 3 29 29 H 1.09004 * 109.47331 * 120.00158 * 2 1 3 30 30 H 0.97002 * 120.00296 * 180.02562 * 7 6 4 31 31 H 1.08004 * 120.05146 * 359.97438 * 15 14 12 32 32 H 1.08006 * 119.84755 * 180.02562 * 16 15 14 33 33 H 1.07989 * 119.80447 * 179.97438 * 17 16 15 34 34 H 1.08001 * 119.95282 * 179.97438 * 18 17 16 35 35 H 1.09005 * 112.84420 * 26.75406 * 21 20 19 36 36 H 1.09001 * 113.61226 * 334.56038 * 22 21 20 37 37 H 1.08996 * 113.61410 * 105.46781 * 22 21 20 38 38 H 1.08999 * 113.61387 * 270.88020 * 23 22 21 39 39 H 1.09005 * 113.60662 * 139.97832 * 23 22 21 40 40 H 1.08994 * 113.61985 * 254.53534 * 24 21 20 41 41 H 1.09008 * 113.61255 * 25.35634 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7874 2.1889 -1.0810 5 1 1.7373 3.2602 -0.9537 6 6 1.6231 1.6305 -2.3434 7 7 1.2501 0.3765 -2.4636 8 14 1.9323 2.6632 -3.8690 9 1 3.3563 2.5376 -4.2714 10 1 1.0619 2.1871 -4.9740 11 1 1.6249 4.0858 -3.5744 12 6 2.6951 1.8566 1.0641 13 8 3.3161 2.8985 0.9739 14 6 2.6825 1.1139 2.3377 15 6 1.5214 0.4593 2.7582 16 6 1.5166 -0.2333 3.9491 17 6 2.6579 -0.2841 4.7332 18 6 3.8118 0.3581 4.3298 19 6 3.8371 1.0546 3.1307 20 8 4.9718 1.6809 2.7303 21 6 6.1395 1.4819 3.5298 22 6 6.4952 2.6902 4.4121 23 6 7.9669 2.4115 4.0637 24 6 7.4541 1.7444 2.7764 25 1 -0.3633 -0.7085 0.7443 26 1 -0.3633 0.9989 0.2416 27 1 -0.3633 -0.2902 -0.9857 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.1358 -0.0133 -3.3445 31 1 0.6293 0.4964 2.1506 32 1 0.6190 -0.7392 4.2731 33 1 2.6449 -0.8291 5.6654 34 1 4.6972 0.3142 4.9467 35 1 6.1268 0.5346 4.0690 36 1 6.1264 3.6390 4.0224 37 1 6.2611 2.5449 5.4666 38 1 8.4545 1.7191 4.7499 39 1 8.5516 3.3139 3.8847 40 1 7.9940 0.8357 2.5106 41 1 7.3471 2.4337 1.9387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118217063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = -17.341446 kcal Electronic energy + Delta-G solvation = -23601.458446 eV Core-core repulsion = 20254.861983 eV Total energy + Delta-G solvation = -3346.596464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60702 -40.36600 -38.87969 -37.29320 -36.82206 -33.92650 -31.98768 -31.21905 -30.71283 -27.27374 -26.67521 -26.30733 -24.47626 -23.59574 -23.01359 -21.29056 -20.44027 -19.24290 -18.75143 -18.03396 -17.27998 -16.69896 -16.53073 -16.13118 -15.88087 -15.63893 -15.46224 -15.28030 -14.84627 -14.41829 -14.33700 -13.75140 -13.49203 -13.46091 -13.11210 -13.01068 -12.90118 -12.63202 -12.59328 -12.39634 -12.26581 -12.15898 -12.11751 -11.83538 -11.61157 -11.35137 -11.17054 -10.69791 -10.35095 -9.80822 -9.73385 -9.08785 -8.32261 -5.87689 0.13456 0.50845 1.34026 1.39381 1.48916 2.12543 2.24371 2.37876 2.84901 2.98786 3.23582 3.54038 3.59321 3.77706 3.83362 3.93074 4.00681 4.19964 4.23839 4.41338 4.52643 4.55188 4.68031 4.74404 4.76304 4.85172 4.91261 4.94290 4.99593 5.00505 5.09640 5.17632 5.30935 5.38678 5.43213 5.46471 5.56372 5.73010 5.80720 5.93424 6.11961 6.56698 6.67001 7.21540 7.49231 8.09339 8.61175 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.005632 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.941819 B = 4970.775710 C = 6335.879460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.106 3.894 3 N -0.450 5.450 4 C -0.340 4.340 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.861 5.861 8 Si 0.972 3.028 9 H -0.281 1.281 10 H -0.263 1.263 11 H -0.277 1.277 12 C 0.475 3.525 13 O -0.628 6.628 14 C -0.178 4.178 15 C -0.068 4.068 16 C -0.162 4.162 17 C -0.057 4.057 18 C -0.216 4.216 19 C 0.146 3.854 20 O -0.315 6.315 21 C 0.030 3.970 22 C -0.155 4.155 23 C -0.117 4.117 24 C -0.141 4.141 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.274 0.726 31 H 0.131 0.869 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 -6.829 15.341 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 N -0.169 5.169 4 C -0.468 4.468 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.499 5.499 8 Si 0.796 3.204 9 H -0.207 1.207 10 H -0.187 1.187 11 H -0.202 1.202 12 C 0.266 3.734 13 O -0.516 6.516 14 C -0.182 4.182 15 C -0.087 4.087 16 C -0.179 4.179 17 C -0.074 4.074 18 C -0.235 4.235 19 C 0.099 3.901 20 O -0.228 6.228 21 C -0.025 4.025 22 C -0.193 4.193 23 C -0.154 4.154 24 C -0.178 4.178 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.189 0.811 34 H 0.176 0.824 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.006 -6.358 14.914 17.290 hybrid contribution -0.011 0.913 -1.308 1.595 sum 5.995 -5.445 13.607 15.835 Atomic orbital electron populations 1.21836 0.95183 0.99535 1.01791 1.22163 0.95752 0.82368 1.01342 1.43820 1.46400 1.12181 1.14458 1.19284 1.50228 0.90630 0.86641 0.92053 1.25958 0.94797 0.97495 1.00593 1.69996 1.40856 1.14082 1.24932 0.85283 0.78322 0.78705 0.78071 1.20701 1.18730 1.20199 1.18551 0.82390 0.87002 0.85417 1.90547 1.47019 1.28514 1.85508 1.19600 0.95445 1.06444 0.96743 1.21561 0.95912 0.94058 0.97157 1.21344 1.00649 1.01851 0.94099 1.21513 0.90754 0.95402 0.99778 1.21468 1.02190 1.03867 0.95925 1.19351 0.85895 0.91784 0.93119 1.86387 1.17261 1.66381 1.52766 1.24714 0.82950 1.00579 0.94255 1.23451 0.97593 0.97714 1.00520 1.22645 0.94969 1.01808 0.96008 1.23215 0.93903 1.02123 0.98609 0.91516 0.95365 0.92065 0.89301 0.92358 0.91514 0.85147 0.82162 0.81113 0.82355 0.85941 0.91742 0.88755 0.86707 0.89888 0.89171 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 7.89 71.98 0.57 -4.73 16 2 C 0.11 5.06 4.83 86.38 0.42 5.47 16 3 N -0.45 -25.35 2.61 -639.27 -1.67 -27.02 16 4 C -0.34 -20.48 8.62 84.09 0.72 -19.76 16 5 H 0.06 3.99 7.73 -2.91 -0.02 3.96 16 6 C 0.02 0.84 5.42 84.95 0.46 1.30 16 7 N -0.86 -44.96 8.38 21.68 0.18 -44.78 16 8 Si 0.97 44.45 29.61 68.60 2.03 46.48 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.48 27.09 7.03 86.67 0.61 27.69 16 13 O -0.63 -40.99 15.93 12.05 0.19 -40.80 16 14 C -0.18 -8.06 5.03 -20.01 -0.10 -8.16 16 15 C -0.07 -2.46 7.52 22.53 0.17 -2.29 16 16 C -0.16 -4.17 10.02 22.24 0.22 -3.94 16 17 C -0.06 -1.26 10.03 22.31 0.22 -1.04 16 18 C -0.22 -5.92 9.00 22.34 0.20 -5.72 16 19 C 0.15 5.76 6.66 22.85 0.15 5.91 16 20 O -0.31 -13.27 8.85 -73.52 -0.65 -13.92 16 21 C 0.03 0.86 3.64 31.12 0.11 0.97 16 22 C -0.16 -3.68 7.91 31.12 0.25 -3.43 16 23 C -0.12 -2.13 8.08 31.12 0.25 -1.88 16 24 C -0.14 -3.60 7.91 31.12 0.25 -3.35 16 25 H 0.07 2.22 7.82 -2.39 -0.02 2.20 16 26 H 0.03 1.27 7.70 -2.39 -0.02 1.25 16 27 H 0.06 2.72 6.84 -2.39 -0.02 2.70 16 28 H 0.09 4.62 5.76 -2.39 -0.01 4.61 16 29 H 0.06 2.52 5.15 -2.38 -0.01 2.51 16 30 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 31 H 0.13 4.82 4.98 -2.91 -0.01 4.80 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.17 2.16 8.06 -2.92 -0.02 2.14 16 34 H 0.16 3.18 5.94 -2.91 -0.02 3.16 16 35 H 0.12 2.65 6.03 -2.38 -0.01 2.63 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -77.71 327.50 5.63 -72.08 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.04 Total: 20.92 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.51 Total: -12.95 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.49 Total: -71.80 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -0.46 Total: -54.73 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -77.71 5.63 -72.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118217063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.736 kcal (2) G-P(sol) polarization free energy of solvation -77.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds