Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99413 * 2 1 4 4 C 1.50698 * 109.47065 * 269.99801 * 3 2 1 5 5 H 1.07994 * 119.99851 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99927 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00044 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99679 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47450 * 60.00061 * 8 6 4 10 10 H 1.48507 * 109.46683 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47362 * 299.99490 * 8 6 4 12 12 C 1.34769 * 120.00114 * 179.97438 * 2 1 3 13 13 O 1.21589 * 119.99908 * 174.29642 * 12 2 1 14 14 C 1.47535 * 120.00257 * 354.29388 * 12 2 1 15 15 C 1.39707 * 120.18907 * 317.59871 * 14 12 2 16 16 C 1.37794 * 119.90699 * 180.25374 * 15 14 12 17 17 C 1.38553 * 120.29780 * 359.42246 * 16 15 14 18 18 C 1.38057 * 120.38712 * 0.60444 * 17 16 15 19 19 C 1.38705 * 120.08733 * 359.67744 * 18 17 16 20 20 O 1.35654 * 120.14763 * 180.02562 * 19 18 17 21 21 C 1.42897 * 117.00524 * 6.45698 * 20 19 18 22 22 C 1.53781 * 113.61339 * 254.37925 * 21 20 19 23 23 C 1.53785 * 87.08077 * 220.01486 * 22 21 20 24 24 C 1.53776 * 113.61756 * 156.87676 * 21 20 19 25 25 H 1.09004 * 109.46895 * 266.84134 * 1 2 3 26 26 H 1.08991 * 109.47457 * 26.84153 * 1 2 3 27 27 H 1.09005 * 109.47088 * 146.84649 * 1 2 3 28 28 H 1.08999 * 109.47457 * 30.00139 * 3 2 1 29 29 H 1.09007 * 109.46699 * 150.00132 * 3 2 1 30 30 H 0.97003 * 119.99854 * 179.97438 * 7 6 4 31 31 H 1.08001 * 120.04741 * 359.97438 * 15 14 12 32 32 H 1.07994 * 119.85196 * 179.69626 * 16 15 14 33 33 H 1.07993 * 119.80817 * 180.32078 * 17 16 15 34 34 H 1.08003 * 119.95544 * 179.69798 * 18 17 16 35 35 H 1.09002 * 112.84790 * 25.68140 * 21 20 19 36 36 H 1.08994 * 113.61209 * 334.56070 * 22 21 20 37 37 H 1.08993 * 113.61731 * 105.46823 * 22 21 20 38 38 H 1.08997 * 113.61756 * 270.88631 * 23 22 21 39 39 H 1.09003 * 113.61448 * 139.97607 * 23 22 21 40 40 H 1.08995 * 113.61879 * 254.52947 * 24 21 20 41 41 H 1.09009 * 113.61238 * 25.35231 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1267 2.8776 -1.6727 7 7 3.5539 3.6178 -0.6731 8 14 3.4386 3.4164 -3.4340 9 1 2.1414 3.5941 -4.1344 10 1 4.1809 4.7026 -3.4339 11 1 4.2412 2.3812 -4.1336 12 6 2.1389 -1.1671 0.0005 13 8 3.3503 -1.1697 -0.1041 14 6 1.4068 -2.4416 0.1281 15 6 0.3579 -2.5607 1.0433 16 6 -0.3185 -3.7554 1.1614 17 6 0.0289 -4.8367 0.3678 18 6 1.0637 -4.7328 -0.5402 19 6 1.7592 -3.5396 -0.6682 20 8 2.7758 -3.4359 -1.5603 21 6 2.9867 -4.5456 -2.4356 22 6 4.2173 -5.3927 -2.0710 23 6 4.4946 -5.4972 -3.5800 24 6 3.7238 -4.1753 -3.7334 25 1 -0.3633 -0.0566 1.0262 26 1 -0.3634 0.9168 -0.4640 27 1 -0.3633 -0.8604 -0.5620 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 4.0313 4.4434 -0.8504 31 1 0.0806 -1.7190 1.6605 32 1 -1.1259 -3.8480 1.8725 33 1 -0.5100 -5.7678 0.4633 34 1 1.3318 -5.5816 -1.1518 35 1 2.0833 -5.1333 -2.5991 36 1 4.9811 -4.8401 -1.5240 37 1 3.9686 -6.3464 -1.6057 38 1 4.0043 -6.3462 -4.0563 39 1 5.5512 -5.4188 -3.8363 40 1 3.0769 -4.1463 -4.6101 41 1 4.3517 -3.2890 -3.6412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118319605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -15.381695 kcal Electronic energy + Delta-G solvation = -23182.216812 eV Core-core repulsion = 19835.705330 eV Total energy + Delta-G solvation = -3346.511482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52556 -39.05846 -37.70095 -36.19156 -34.64561 -32.62055 -31.08577 -29.82803 -27.65859 -25.87024 -25.75902 -25.47733 -23.81479 -22.32646 -21.83214 -19.75357 -19.11006 -17.98907 -16.58299 -16.42450 -16.15619 -15.63494 -15.21632 -15.07147 -14.59036 -14.37510 -14.33511 -13.92605 -13.73777 -12.74430 -12.62568 -12.52769 -12.47422 -12.08074 -12.06221 -11.77391 -11.57217 -11.49613 -11.35725 -11.12051 -10.93258 -10.82169 -10.51143 -10.49422 -10.29919 -10.08637 -9.57569 -8.96469 -8.76485 -8.36485 -8.07290 -7.53274 -5.97268 -4.01026 1.15851 1.47972 3.32241 3.36536 3.40320 3.41979 3.46423 3.89152 4.19572 4.41603 4.45070 4.50818 4.63717 4.68342 4.85080 4.89957 5.04918 5.16185 5.35332 5.38402 5.43292 5.49987 5.63644 5.67771 5.74688 5.77920 5.85886 5.90477 5.96450 6.00243 6.20027 6.29458 6.30832 6.36228 6.48772 6.79982 7.13543 7.49384 7.59113 7.65147 7.99778 8.31553 8.50690 8.98600 9.20657 9.63463 11.10834 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.005553 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.734750 B = 5041.513648 C = 6653.947541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.599 5.599 3 C 0.248 3.752 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.551 3.449 13 O -0.521 6.521 14 C -0.153 4.153 15 C -0.053 4.053 16 C -0.170 4.170 17 C -0.068 4.068 18 C -0.222 4.222 19 C 0.176 3.824 20 O -0.273 6.273 21 C 0.048 3.952 22 C -0.154 4.154 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -19.250 -0.574 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.332 5.332 3 C 0.129 3.871 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.337 3.663 13 O -0.398 6.398 14 C -0.157 4.157 15 C -0.071 4.071 16 C -0.188 4.188 17 C -0.086 4.086 18 C -0.240 4.240 19 C 0.128 3.872 20 O -0.184 6.184 21 C -0.009 4.009 22 C -0.192 4.192 23 C -0.177 4.177 24 C -0.169 4.169 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.678 -18.870 -0.632 20.027 hybrid contribution -0.053 0.151 -0.983 0.996 sum -6.730 -18.719 -1.616 19.958 Atomic orbital electron populations 1.21746 0.81629 1.02678 0.99898 1.48049 1.06045 1.07485 1.71605 1.19281 0.92411 0.77933 0.97514 1.21405 1.36251 1.06021 0.92357 0.92533 1.24923 0.95434 0.96416 0.97340 1.69925 1.38581 1.14420 1.30709 0.86572 0.78323 0.77739 0.84865 1.20310 1.21204 1.20202 1.17892 0.87211 0.82976 0.78192 1.90771 1.13605 1.86723 1.48662 1.19667 1.00172 0.94508 1.01310 1.21346 0.92141 0.98042 0.95604 1.20935 1.02362 0.93327 1.02184 1.20985 0.95261 0.98411 0.93975 1.21156 1.01042 0.97250 1.04590 1.19019 0.86767 0.92366 0.89014 1.86418 1.46391 1.41156 1.44477 1.24262 0.97587 0.88068 0.90960 1.23493 0.98615 0.99952 0.97100 1.22649 1.01288 0.97541 0.96249 1.23189 0.99081 0.99066 0.95569 0.93846 0.90791 0.92474 0.94906 0.93979 0.92751 0.84574 0.85666 0.85876 0.85274 0.88501 0.88567 0.91127 0.89970 0.90380 0.90653 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 8.97 59.85 0.54 1.99 16 2 N -0.60 -13.67 2.86 -184.19 -0.53 -14.19 16 3 C 0.25 6.75 5.10 -5.19 -0.03 6.73 16 4 C -0.52 -15.39 9.39 -34.44 -0.32 -15.71 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 8 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.55 12.84 7.06 -12.47 -0.09 12.75 16 13 O -0.52 -14.47 15.88 -9.22 -0.15 -14.61 16 14 C -0.15 -2.80 4.93 -104.85 -0.52 -3.32 16 15 C -0.05 -0.76 7.91 -39.20 -0.31 -1.07 16 16 C -0.17 -1.95 10.02 -39.63 -0.40 -2.34 16 17 C -0.07 -0.75 10.03 -39.53 -0.40 -1.14 16 18 C -0.22 -2.85 9.00 -39.47 -0.36 -3.20 16 19 C 0.18 2.99 6.66 -38.70 -0.26 2.73 16 20 O -0.27 -5.00 8.99 -33.17 -0.30 -5.30 16 21 C 0.05 0.62 3.65 -25.92 -0.09 0.53 16 22 C -0.15 -1.74 7.91 -25.92 -0.21 -1.94 16 23 C -0.14 -1.33 8.08 -25.91 -0.21 -1.54 16 24 C -0.13 -1.60 7.91 -25.92 -0.21 -1.81 16 25 H 0.04 0.61 6.73 -51.93 -0.35 0.26 16 26 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 27 H 0.06 0.89 6.62 -51.93 -0.34 0.55 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 1.28 7.51 -51.92 -0.39 0.89 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.14 1.77 6.04 -52.49 -0.32 1.45 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.33 5.95 -52.48 -0.31 1.02 16 35 H 0.10 1.04 6.01 -51.93 -0.31 0.72 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.43 8.14 -51.92 -0.42 1.00 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -35.52 340.04 -8.87 -44.38 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.79 Total: -0.69 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.95 Total: -5.66 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.21 Total: -40.73 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.44 Total: -19.91 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.52 -8.87 -44.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118319605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.002 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds