Wall clock time and date at job start Tue Mar 31 2020 06:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99413 * 2 1 4 4 C 1.50698 * 109.47065 * 269.99801 * 3 2 1 5 5 H 1.07994 * 119.99851 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99927 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00044 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99679 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47450 * 60.00061 * 8 6 4 10 10 H 1.48507 * 109.46683 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47362 * 299.99490 * 8 6 4 12 12 C 1.34769 * 120.00114 * 179.97438 * 2 1 3 13 13 O 1.21589 * 119.99908 * 174.29642 * 12 2 1 14 14 C 1.47535 * 120.00257 * 354.29388 * 12 2 1 15 15 C 1.39707 * 120.18907 * 317.59871 * 14 12 2 16 16 C 1.37794 * 119.90699 * 180.25374 * 15 14 12 17 17 C 1.38553 * 120.29780 * 359.42246 * 16 15 14 18 18 C 1.38057 * 120.38712 * 0.60444 * 17 16 15 19 19 C 1.38705 * 120.08733 * 359.67744 * 18 17 16 20 20 O 1.35654 * 120.14763 * 180.02562 * 19 18 17 21 21 C 1.42897 * 117.00524 * 6.45698 * 20 19 18 22 22 C 1.53781 * 113.61339 * 254.37925 * 21 20 19 23 23 C 1.53785 * 87.08077 * 220.01486 * 22 21 20 24 24 C 1.53776 * 113.61756 * 156.87676 * 21 20 19 25 25 H 1.09004 * 109.46895 * 266.84134 * 1 2 3 26 26 H 1.08991 * 109.47457 * 26.84153 * 1 2 3 27 27 H 1.09005 * 109.47088 * 146.84649 * 1 2 3 28 28 H 1.08999 * 109.47457 * 30.00139 * 3 2 1 29 29 H 1.09007 * 109.46699 * 150.00132 * 3 2 1 30 30 H 0.97003 * 119.99854 * 179.97438 * 7 6 4 31 31 H 1.08001 * 120.04741 * 359.97438 * 15 14 12 32 32 H 1.07994 * 119.85196 * 179.69626 * 16 15 14 33 33 H 1.07993 * 119.80817 * 180.32078 * 17 16 15 34 34 H 1.08003 * 119.95544 * 179.69798 * 18 17 16 35 35 H 1.09002 * 112.84790 * 25.68140 * 21 20 19 36 36 H 1.08994 * 113.61209 * 334.56070 * 22 21 20 37 37 H 1.08993 * 113.61731 * 105.46823 * 22 21 20 38 38 H 1.08997 * 113.61756 * 270.88631 * 23 22 21 39 39 H 1.09003 * 113.61448 * 139.97607 * 23 22 21 40 40 H 1.08995 * 113.61879 * 254.52947 * 24 21 20 41 41 H 1.09009 * 113.61238 * 25.35231 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2416 6 6 3.1267 2.8776 -1.6727 7 7 3.5539 3.6178 -0.6731 8 14 3.4386 3.4164 -3.4340 9 1 2.1414 3.5941 -4.1344 10 1 4.1809 4.7026 -3.4339 11 1 4.2412 2.3812 -4.1336 12 6 2.1389 -1.1671 0.0005 13 8 3.3503 -1.1697 -0.1041 14 6 1.4068 -2.4416 0.1281 15 6 0.3579 -2.5607 1.0433 16 6 -0.3185 -3.7554 1.1614 17 6 0.0289 -4.8367 0.3678 18 6 1.0637 -4.7328 -0.5402 19 6 1.7592 -3.5396 -0.6682 20 8 2.7758 -3.4359 -1.5603 21 6 2.9867 -4.5456 -2.4356 22 6 4.2173 -5.3927 -2.0710 23 6 4.4946 -5.4972 -3.5800 24 6 3.7238 -4.1753 -3.7334 25 1 -0.3633 -0.0566 1.0262 26 1 -0.3634 0.9168 -0.4640 27 1 -0.3633 -0.8604 -0.5620 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 4.0313 4.4434 -0.8504 31 1 0.0806 -1.7190 1.6605 32 1 -1.1259 -3.8480 1.8725 33 1 -0.5100 -5.7678 0.4633 34 1 1.3318 -5.5816 -1.1518 35 1 2.0833 -5.1333 -2.5991 36 1 4.9811 -4.8401 -1.5240 37 1 3.9686 -6.3464 -1.6057 38 1 4.0043 -6.3462 -4.0563 39 1 5.5512 -5.4188 -3.8363 40 1 3.0769 -4.1463 -4.6101 41 1 4.3517 -3.2890 -3.6412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118319605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:34 Heat of formation + Delta-G solvation = -37.890900 kcal Electronic energy + Delta-G solvation = -23183.192885 eV Core-core repulsion = 19835.705330 eV Total energy + Delta-G solvation = -3347.487555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70385 -40.44613 -38.98165 -37.27944 -36.52713 -34.78042 -32.37443 -30.88952 -29.64121 -27.48047 -26.71054 -26.41800 -25.60377 -23.72800 -23.00026 -20.91336 -20.38405 -19.20151 -18.70858 -18.03258 -17.47237 -16.95179 -16.61769 -16.31945 -16.08735 -15.75339 -15.65847 -15.21999 -14.94390 -14.41643 -14.23844 -13.82881 -13.56439 -13.52954 -13.47613 -13.31370 -12.99650 -12.83730 -12.66180 -12.57305 -12.40467 -12.27216 -12.21981 -11.92344 -11.76291 -11.40005 -11.21847 -10.68005 -10.65060 -9.94825 -9.45868 -9.14803 -8.24593 -6.39344 0.04996 0.45474 1.31943 1.37271 1.44714 1.91502 2.28436 2.31496 2.43684 2.84728 3.03937 3.48706 3.55623 3.67956 3.74099 3.80858 3.91804 4.07799 4.19870 4.36517 4.43415 4.50907 4.57015 4.65912 4.70675 4.73123 4.83312 4.90893 4.93162 4.97445 5.01490 5.06112 5.16572 5.26657 5.38069 5.39957 5.50747 5.54005 5.82765 5.86908 6.04215 6.52490 6.66934 6.75478 7.25240 7.46101 8.82297 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.005553 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.734750 B = 5041.513648 C = 6653.947541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.607 5.607 3 C 0.262 3.738 4 C -0.543 4.543 5 H 0.045 0.955 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.543 3.457 13 O -0.589 6.589 14 C -0.193 4.193 15 C -0.054 4.054 16 C -0.157 4.157 17 C -0.049 4.049 18 C -0.217 4.217 19 C 0.151 3.849 20 O -0.321 6.321 21 C 0.035 3.965 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.145 4.145 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.031 0.969 29 H -0.006 1.006 30 H 0.268 0.732 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -22.369 -1.220 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.338 5.338 3 C 0.141 3.859 4 C -0.581 4.581 5 H 0.063 0.937 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.197 1.197 11 H -0.208 1.208 12 C 0.333 3.667 13 O -0.470 6.470 14 C -0.197 4.197 15 C -0.072 4.072 16 C -0.175 4.175 17 C -0.066 4.066 18 C -0.235 4.235 19 C 0.104 3.896 20 O -0.234 6.234 21 C -0.020 4.020 22 C -0.192 4.192 23 C -0.156 4.156 24 C -0.183 4.183 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.012 0.988 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.175 0.825 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.716 -21.997 -1.267 24.081 hybrid contribution 0.822 1.045 -0.715 1.510 sum -8.894 -20.952 -1.982 22.848 Atomic orbital electron populations 1.22007 0.78048 1.03279 1.02577 1.48069 1.08290 1.06041 1.71377 1.18767 0.90932 0.80115 0.96072 1.21614 1.37160 1.06464 0.92910 0.93698 1.25847 0.94740 0.96272 1.02140 1.70037 1.38788 1.14813 1.33011 0.85488 0.78929 0.77405 0.79109 1.18315 1.19678 1.20760 1.18814 0.86845 0.84679 0.76386 1.90704 1.16656 1.87884 1.51743 1.19439 1.02695 0.92427 1.05120 1.21486 0.91172 0.99949 0.94602 1.21398 1.02142 0.91805 1.02150 1.21588 0.93639 0.99876 0.91541 1.21483 1.00705 0.96154 1.05188 1.19384 0.87361 0.93582 0.89265 1.86377 1.47494 1.43855 1.45670 1.24709 0.99302 0.87598 0.90399 1.23445 0.97086 1.00291 0.98349 1.22655 1.01452 0.96733 0.94769 1.23243 0.99500 0.99275 0.96262 0.90145 0.91308 0.90515 0.95127 0.98753 0.92269 0.83881 0.81591 0.81155 0.82503 0.85473 0.91759 0.88432 0.86567 0.90121 0.89181 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.84 8.97 127.77 1.15 3.99 16 2 N -0.61 -29.22 2.86 -854.92 -2.44 -31.67 16 3 C 0.26 15.33 5.10 85.63 0.44 15.76 16 4 C -0.54 -33.76 9.39 25.60 0.24 -33.52 16 5 H 0.04 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.55 5.46 84.65 0.46 1.01 16 7 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 8 Si 0.97 47.31 29.54 68.60 2.03 49.34 16 9 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 12 C 0.54 27.10 7.06 86.70 0.61 27.71 16 13 O -0.59 -35.91 15.88 9.88 0.16 -35.76 16 14 C -0.19 -7.22 4.93 -20.01 -0.10 -7.32 16 15 C -0.05 -1.43 7.91 22.52 0.18 -1.25 16 16 C -0.16 -2.84 10.02 22.24 0.22 -2.61 16 17 C -0.05 -0.80 10.03 22.30 0.22 -0.58 16 18 C -0.22 -4.84 9.00 22.34 0.20 -4.64 16 19 C 0.15 5.14 6.66 22.84 0.15 5.30 16 20 O -0.32 -12.40 8.99 -75.82 -0.68 -13.09 16 21 C 0.04 0.91 3.65 31.12 0.11 1.03 16 22 C -0.15 -3.40 7.91 31.12 0.25 -3.16 16 23 C -0.12 -2.09 8.08 31.12 0.25 -1.84 16 24 C -0.15 -3.64 7.91 31.12 0.25 -3.39 16 25 H 0.08 2.15 6.73 -2.38 -0.02 2.14 16 26 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 27 H 0.08 2.33 6.62 -2.38 -0.02 2.32 16 28 H 0.03 1.76 8.07 -2.39 -0.02 1.75 16 29 H -0.01 -0.38 7.51 -2.38 -0.02 -0.40 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.14 3.45 6.04 -2.91 -0.02 3.43 16 32 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.16 2.52 5.95 -2.91 -0.02 2.50 16 35 H 0.13 2.39 6.01 -2.39 -0.01 2.37 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -86.93 340.04 5.01 -81.93 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.03 Total: 10.80 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.63 Total: -3.51 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.16 Total: -89.72 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.52 Total: -48.84 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -86.93 5.01 -81.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118319605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.036 kcal (2) G-P(sol) polarization free energy of solvation -86.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds